From the bioRxiv: A Selection of Recently Posted Papers from SCGB Investigators and Others

Each month, SCGB scans the bioRxiv and arXiv for interesting papers from the SCGB community and beyond.

Multi-area functional modules mediate feedforward and recurrent processing in visual cortical hierarchy

Xiaoxuan Jia, Joshua H. Siegle, Séverine Durand, Greggory Heller, Tamina Ramirez, and Shawn R. Olsen

bioRxiv posted 31 August 2020

[Abstract] [Full Text] [PDF]

 

The connectome of the adult Drosophila mushroom body: implications for function

Feng Li, Jack Lindsey, Elizabeth Marin, Nils Otto, Marisa Dreher, Georgia Dempsey, Ildiko Stark, Alexander Shakeel Bates, Markus William Pleijzier, Philipp Schlegel, Aljoscha Nern, Shinya Takemura, Tansy Yang, Audrey Francis, Amalia Braun, Ruchi Parekh, Marta Costa, Louis Scheffer, Yoshinori Aso, Gregory S.X.E. Jefferis, L. F. Abbott, Ashok Litwin-Kumar, Scott Waddell, and Gerald M. Rubin

bioRxiv posted 29 August 2020

[Abstract] [Full Text] [PDF]

 

Statistical structure of the trial-to-trial timing variability in synfire chains

Dina Obeid, Jacob A Zavatone-Veth, and Cengiz Pehlevan

bioRxiv posted 29 August 2020

[Abstract] [Full Text] [PDF]

 

Integrating barcoded neuroanatomy with spatial transcriptional profiling reveals cadherin correlates of projections shared across the cortex

Yu-Chi Sun, Xiaoyin Chen, Stephan Fischer, Shaina Lu, Jesse Gillis, and Anthony M Zador

bioRxiv posted 26 August 2020

[Abstract] [Full Text] [PDF]

 

Manipulation of striatal population dynamics using temperature warps judgment of time

Tiago Monteiro, Filipe S. Rodrigues, Margarida Pexirra, Bruno Filipe Pereira Cruz, Ana I. Goncalves, Pavel E. Rueda-Orozco, and Joseph J. Paton

bioRxiv posted 24 August 2020

[Abstract] [Full Text] [PDF]

 

Focal Electrical Stimulation of Human Retinal Ganglion Cells

Sasi Madugula, Alex R. Gogliettino, Moosa Zaidi, Gorish Aggarwal, Alexandra Kling, Nishal P. Shah, Ramandeep Vilkhu, Maddy Hays, Huy Nguyan, Victoria Fan, Eric G. Wu, Pawel Hottowy, Alexander Sher, Alan M. Litke, Ruwan A. Silva, and E.J. Chichilnisky

bioRxiv posted 24 August 2020

[Abstract] [Full Text] [PDF]

 

Deep Graph Pose: a semi-supervised deep graphical model for improved animal pose tracking

Anqi Wu, Estefany Kelly Buchanan, Matthew R Whiteway, Michael Schartner, Guido T Meijer, Jean-Paul Noel, Erica Rodriguez, Claire Everett, Amy Norovich, Evan S Schaffer, Neeli Mishra, C. Daniel Salzman, Dora E Angelaki, The International Brain Laboratory, John P Cunningham and Liam Paninski

bioRxiv posted 22 August 2020

http://biorxiv.org/content/early/2020/08/22/2020.08.20.259705

 

Interaction between neuronal encoding and population dynamics during categorization task switching in parietal cortex

Krithika Mohan, Oliver Zhu, and David J Freedman

bioRxiv posted 22 August 2020

[Abstract] [Full Text] [PDF]

 

Distinct temporal difference error signals in dopamine axons in three regions of the striatum in a decision-making task

Iku Kimura, Hideyuki Matsumoto, Naoshige Uchida, and Mitsuko Watabe-Uchida

bioRxiv posted 22 August 2020

[Abstract] [Full Text] [PDF]

 

Object manifold geometry across the mouse cortical visual hierarchy

Emmanouil Froudarakis, Uri Cohen, Maria Diamantaki, Edgar Y. Walker, Jacob Reimer, Philipp Berens, Haim Sompolinsky, and Andreas S. Tolias

bioRxiv posted 21 August 2020

[Abstract] [Full Text] [PDF]

 

Local inhibitory control of frontal network metastability underlies the temporal signature of cognitive states

Vincent Fontanier, Matthieu Sarazin, Frederic M Stoll, Bruno Delord, and Emmanuel Procyk

bioRxiv posted 21 August 2020 doi:10.1101/2020.08.20.259192

[Abstract] [Full Text] [PDF]

 

A neuronal ensemble encoding adaptive choice during sensory conflict

Preeti Sareen, Li Yan McCurdy, and Michael Nitabach

bioRxiv posted 14 August 2020

[Abstract] [Full Text] [PDF]

 

Learning an efficient place cell map from grid cells using non-negative sparse coding

Yanbo Lian and Anthony N. Burkitt

bioRxiv posted 13 August 2020

[Abstract] [Full Text] [PDF]

 

Independent population coding of the past and the present in prefrontal cortex during learning

Silvia Maggi and Mark D Humphries

bioRxiv posted 12 August 2020

[Abstract] [Full Text] [PDF]

 

Metamers of Bayesian computation

Hansem Sohn and Mehrdad Jazayeri

bioRxiv posted 12 August 2020

[Abstract] [Full Text] [PDF]

 

Estimation of autocorrelation timescales with Approximate Bayesian Computations

Roxana Zeraati, Tatiana A. Engel, and Anna Levina

bioRxiv posted 12 August 2020

[Abstract] [Full Text] [PDF]

 

Reconciling functional differences in populations of neurons recorded with two-photon imaging and electrophysiology

Joshua H Siegle, Peter Ledochowitsch, Xiaoxuan Jia, Daniel Millman, Gabriel K Ocker, Shiella Caldejon, Linzy Casal, Andrew Cho, Daniel J Denman, Severine Durand, Peter Groblewski, Gregg Heller, India Kato, Sara Kivikas, Jerome Lecoq, Chelsea Nayan, Kiet Ngo, Philip R Nicovich, Kat R North, Tamina K Ramirez, Jackie Swapp, Xana Waughman, Ali Williford, Shawn R Olsen, Christof Koch, Michael A Buice, and Saskia E. J. de Vries

bioRxiv posted 11 August 2020

[Abstract] [Full Text] [PDF]

 

Brain Connectomes Come of Age

Xiao-Jing Wang, Ulises Pereira, Marcello G.P. Rosa, Henry Kennedy

arXiv posted 10 August 2020

[Abstract]

 

Real-time, low-latency closed-loop feedback using markerless posture tracking

Gary A Kane, Goncalo Lopes, Jonny L. Saunders, Alexander Mathis, and Mackenzie Weygandt Mathis

bioRxiv posted 5 August 2020

[Abstract] [Full Text] [PDF]

 

Network-centered homeostasis through inhibition maintains hippocampal spatial map and cortical circuit function

Klara Kaleb, Victor Pedrosa, and Claudia Clopath

bioRxiv posted 4 August 2020

[Abstract] [Full Text] [PDF]

 

Superlinear Precision and Memory in Simple Population Codes

Jimmy H. J. Kim, Ila Fiete, David J. Schwab

arXiv posted 3 August 2020

[Abstract]

 

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