From the bioRxiv: A Selection of Recently Posted Papers from SCGB Investigators and Others

Each month, SCGB scans the bioRxiv for interesting papers from the SCGB community and beyond.

 

Flexible control of speed of cortical dynamics

Jing Wang, Devika Narain, Eghbal Hosseini, and Mehrdad Jazayeri

bioRxiv posted 25 June 2017

[Abstract] [PDF]

 

A cerebellar mechanism for learning prior distributions of time intervals

Devika Narain and Mehrdad Jazayeri

bioRxiv posted 24 June 2017

[Abstract] [PDF]           

       

Quantifying the importance of guessing, decision noise, and variable precision in explaining behavioral variability in visual perception

Shan Shen and Wei Ji Ma

bioRxiv posted 23 June 2017

[Abstract] [PDF]

 

Neural Networks for Efficient Bayesian Decoding of Natural Images from Retinal Neurons

Nikhil Parthasarathy, Eleanor Batty, William Falcon, Thomas Rutten, Mohit Rajpal, E.J. Chichilnisky, and Liam Paninski           

bioRxiv posted 22 June 2017

[Abstract] [PDF]

 

Hippocampal Spike-Timing Correlations Lead to Hexagonal Grid Fields

Mauro M. Monsalve-Mercado and Christian Leibold

bioRxiv posted 21 June 2017

[Abstract] [PDF]

           

Inferring single-trial neural population dynamics using sequential auto-encoders

Chethan Pandarinath, Daniel J. O’Shea, Jasmine Collins, Rafal Jozefowicz, Sergey D. Stavisky, Jonathan C. Kao, Eric M. Trautmann, Matthew T. Kaufman, Stephen I. Ryu, Leigh R. Hochberg, Jaimie M. Henderson, Krishna V. Shenoy, Larry F. Abbott, and David Sussillo

bioRxiv posted 20 June 2017

[Abstract] [PDF]

 

Towards a unified theory of efficient, predictive and sparse coding

Matthew Chalk, Olivier Marre, and Gasper Tkacik

bioRxiv posted 20 June 2017

[Abstract] [PDF]

 

YASS: Yet Another Spike Sorter

JinHyung Lee, David Carlson, Hooshmand Shokri, Weichi Yao, Georges Goetz, Espen Hagen, Eleanor Batty, EJ Chichilnisky, Gaute Einevoll, and Liam Paninski

bioRxiv posted 19 June 2017

[Abstract] [PDF]

 

A computational model that explores the effect of environmental geometries on grid cell representations

Samyukta Jayakumar, Rukhmani Narayanamurthy, Reshma Ramesh, Karthik Soman, Vignesh Muralidharan, and Srinivasa Chakravarthy

bioRxiv posted 19 June 2017

[Abstract] [PDF]

 

Weighted integration of short term memory and sensory signals in the oculomotor system

Nicolas Deravet, Gunnar Blohm, Jean-Jacques Orban de Xivry, and Philippe Lefèvre

bioRxiv posted 19 June 2017

[Abstract] [PDF]

 

Laminar organization of encoding and memory reactivation in the parietal cortex

Aaron Wilber, Ivan Skelin, and Bruce L McNaughton

bioRxiv posted 16 June 2017

[Abstract] [PDF]

 

A rational theory of the limitations of working memory and attention

Ronald van den Berg and Wei Ji Ma

bioRxiv posted 18 June 2017

[Abstract] [PDF]

 

Bayesian Comparison of Explicit and Implicit Causal Inference Strategies in Multisensory Heading Perception

Luigi Acerbi, Kalpana Dokka, Dora E. Angelaki, and Wei Ji Ma

bioRxiv. posted 14 June 2017

[Abstract] [PDF]

 

Sparse coding and dimensionality reduction in cortex

Michael Beyeler, Emily Rounds, Kristofor Carlson, Nikil Dutt, and Jeffrey L. Krichmar

bioRxiv posted 14 June 2017

[Abstract] [PDF]

 

Dopamine, Inference, and Uncertainty

Samuel J. Gershman

bioRxiv posted 14 June 2017

[Abstract] [PDF]

 

Resolving neuronal population code and coordination with gradient boosted trees

Guillaume Viejo, Thomas Cortier, and Adrien Peyrache

bioRxiv posted 13 June 2017

[Abstract] [PDF]

 

Synaptic mechanisms of interference in working memory

Zachary P. Kilpatrick

bioRxiv posted 13 June 2017

[Abstract] [PDF]

 

The hippocampus as a predictive map

Kimberly Lauren Stachenfeld, Matthew M Botvinick, and Samuel J Gershman

bioRxiv posted 7 June 2017

[Abstract] [PDF]

 

Modeling dispersion improves decoding of population neural responses

Abed Ghanbari and Ian Stevenson

bioRxiv posted 5 June 2017

[Abstract] [PDF]

 

Visual pathways from the perspective of cost functions and multi-task deep neural networks

Steven Scholte, Max M. Losch, Kandan Ramakrishnan, Edward de Haan, and Sander Bohte

bioRxiv posted 6 June 2017

[Abstract] [PDF]

 

Simultaneous GCaMP6-based Fiber Photometry and fMRI in Rats

Zhifeng Liang, Yuncong Ma, Glenn D. R. Watson, and Nanyin Zhang

bioRxiv posted 6 June 2017

[Abstract] [PDF]

 

A self-organizing memory network

Callie Federer and Joel Zylberberg

bioRxiv posted 4 June 2017

[Abstract] [PDF]

 

MEA Viewer: a High-performance Interactive Application for Visualizing Electrophysiological Data

Daniel C. Bridges, Kenneth R. Tovar, Bian Wu, Paul K. Hansma, and Kenneth S. Kosik

bioRxiv posted 5 June 2017

[Abstract] [PDF]

 

Task-Dependent Representations Of Stimulus And Choice In Mouse Parietal Cortex

Gerald Pho, Michael Goard, Jonathan Woodson, Benjamin Crawford, and Mriganka Sur

bioRxiv posted 31 May 2017

[Abstract] [PDF]

 

Aberrant Cortical Activity In Multiple GCaMP6-Expressing Transgenic Mouse Lines

Nicholas A. Steinmetz, Christina Buetfering, Jerome Lecoq, Christian R. Lee, Andrew J. Peters, Elina A. K. Jacobs, Philip Coen, Douglas R. Ollerenshaw, Matthew T. Valley, Saskia E. J. de Vries, Marina Garrett, Jun Zhuang, Peter A. Groblewski, Sahar Manavi, Jesse Miles, Casey White, Eric Lee, Fiona Griffin, Joshua D. Larkin, Kate Roll, Sissy Cross, Thuyanh V. Nguyen, Rachael Larsen, Julie Pendergraft, Tanya Daigle, Bosiljka Tasic, Carol L. Thompson, Jack Waters, Shawn Olsen, David J. Margolis, Hongkui Zeng, Michael Hausser, Matteo Carandini, and Kenneth D. Harris

bioRxiv posted 16 May 2017

[Abstract]

 

Late Bayesian inference in sensorimotor behavior

Evan Remington and Mehrdad Jazayeri

bioRxiv posted 24 April 2017

[Abstract]

 

 

 

 

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