Neuroscience: Publications

A Hebbian/Anti-Hebbian Neural Network for Linear Subspace Learning: A Derivation from Multidimensional Scaling of Streaming Data

Cengiz Pehlevan, Tao Hu, Dmitri B Chklovskii

A consistent muscle activation strategy underlies crawling and swimming in Caenorhabditis elegans.

Victoria J Butler, Robyn Branicky, Eviatar Yemini, Jana F Liewald, Alexander Gottschalk, Rex A Kerr, Dmitri B Chklovskii, William R Schafer

A Hebbian/Anti-Hebbian Network Derived from Online Non-Negative Matrix Factorization Can Cluster and Discover Sparse Features

Cengiz Pehlevan, Dmitri B Chklovskii

A Hebbian/Anti-Hebbian Network for Online Sparse Dictionary Learning Derived from Symmetric Matrix Factorization

Tao Hu, Cengiz Pehlevan, Dmitri B Chklovskii

Toward large-scale connectome reconstructions

Stephen M Plaza, Louis K Scheffer, Dmitri B Chklovskii

Sparse LMS via Online Linearized Bregman Iteration

Tao Hu, Dmitri B. Chklovskii

Wiring economy can account for cell body placement across species and brain areas

Marta Rivera-Alba, Hanchuan Peng, Gonzalo G. de Polavieja, Dmitri B. Chklovskii

Thalamocortical input onto layer 5 pyramidal neurons measured using quantitative large-scale array tomography

Jong-Cheol Rah, Erhan Bas, Jennifer Colonell, Yuriy Mishchenko, Bill Karsh, Richard D Fetter, Eugene W Myers, Dmitri B Chklovskii, Karel Svoboda, Timothy D Harris, John T R Isaac

A Neuron as a Signal Processing Device

Tao Hu, Zaid J Towfic, Cengiz Pehlevan, Alex Genkin, Dmitri B Chklovskii

Machine Learning of Hierarchical Clustering to Segment 2D and 3D Images.

Juan Nunez-Iglesias, Ryan Kennedy, Toufiq Parag, Jianbo Shi, Dmitri B Chklovskii

A visual motion detection circuit suggested by Drosophila connectomics

Shin-ya Takemura, Arjun Bharioke, Zhiyuan Lu, Aljoscha Nern, Shiv Vitaladevuni, Patricia K Rivlin, William T Katz, Donald J Olbris, Stephen M Plaza, Philip Winston, Katerina Blazek, Lei-Ann Chang, Omotara Ogundeyi, Mathew A Saunders, Victor Shapiro, Christopher Sigmund, Gerald M Rubin, Louis K Scheffer, Ian A Meinertzhagen, Dmitri B Chklovskii

Electron Microscopy Reconstruction of Brain Structure Using Sparse Representations Over Learned Dictionaries

Tao Hu, Juan Nunez-Iglesias, Shiv Vitaladevuni, Lou Scheffer, Shan Xu, Mehdi Bolorizadeh, Harald Hess, Richard Fetter, Dmitri B. Chklovskii

Vertebrate versus invertebrate neural circuits.

Paul Katz, Sten Grillner, Rachel Wilson, Alexander Borst, Ralph Greenspan, György Buzsáki, Kevan Martin, Eve Marder, William Kristan, Rainer Friedrich, Dmitri Mitya Chklovskii

Tracking Multiple Neurons on Worm Images

Toufiq Parag, Victoria Butler, Dmitri Chklovskii

A lattice filter model of the visual pathway

Karol Gregor, Dmitri B Chklovskii

Neuronal Spike Generation Mechanism as an Oversampling, Noise -shaping A-to-D Converter

Dmitri B Chklovskii, Daniel Soudry

A mechanistic model of early sensory processing based on subtracting sparse representations

Shaul Druckmann, Tao Hu, Dmitri B Chklovskii

Proprioceptive Coupling within Motor Neurons Drives C. elegans Forward Locomotion

Quan Wen, Michelle D Po, Elizabeth Hulme, Sway Chen, Xinyu Liu, Sen Wai Kwok, Marc Gershow, Andrew M Leifer, Victoria Butler, Christopher Fang-Yen, Taizo Kawano, William R Schafer, George Whitesides, Matthieu Wyart, Dmitri B Chklovskii, Mei Zhen, Aravinthan D T Samuel

Neuronal Circuits Underlying Persistent Representations Despite Time Varying Activity

Shaul Druckmann, Dmitri B Chklovskii

Online computation of sparse representations of time varying stimuli using a biologically motivated neural network

Tao Hu, Dmitri B. Chklovskii

A network of spiking neurons for computing sparse representations in an energy-efficient way.

Tao Hu,  Alexander Genkin, Dmitri B Chklovskii

Neuroscience. The mind of a male?

Dmitri B Chklovskii,  Cornelia I Bargmann

Wiring economy and volume exclusion determine neuronal placement in the Drosophila brain.

Marta Rivera-Alba,  Shiv N Vitaladevuni,  Yuriy Mishchenko,  Yuriy Mischenko,  Zhiyuan Lu,  Shin-Ya Takemura,  Lou Scheffer,  Ian A Meinertzhagen, Dmitri B Chklovskii,  Gonzalo G de Polavieja

Large-Scale Automated Histology in the Pursuit of Connectomes

David Kleinfeld,  Arjun Bharioke,  Pablo Blinder,  Davi D Bock,  Kevin L Briggman, Dmitri B Chklovskii,  Winfried Denk,  Moritz Helmstaedter,  John P Kaufhold,  Wei-Chung Allen Lee,  Hanno S Meyer,  Kristina D Micheva,  Marcel Oberlaender,  Steffen Prohaska, R Clay Reid,  Stephen J Smith,  Shinya Takemura,  Philbert S Tsai, Bert Sakmann

Structural Properties of the Caenorhabditis elegans Neuronal Network

Lav R Varshney,  Beth L Chen,  Eric Paniagua,  David H Hall, Dmitri B Chklovskii

High Resolution Segmentation of Neuronal Tissues from Low Depth-Resolution EM Imagery.

Daniel Glasner,  Tao Hu,  Juan Nunez-Iglesias,  Lou Scheffer,  Shan Xu,  Harald F. Hess,  Richard Fetter, Dmitri B. Chklovskii,  Ronen Basri

Semi-automated reconstruction of neural circuits using electron microscopy.

Dmitri B Chklovskii,  Shiv Vitaladevuni,  Louis K Scheffer

Ultrastructural Analysis of Hippocampal Neuropil from the Connectomics Perspective

Yuriy Mishchenko,  Tao Hu,  Josef Spacek,  John Mendenhall, Kristen M Harris, Dmitri B Chklovskii

Over-complete representations on recurrent neural networks can support persistent percepts.

Shaul Druckmann, Dmitri B. Chklovskii

Increasing depth resolution of electron microscopy of neural circuits using sparse tomographic reconstruction.

Ashok Veeraraghavan,  Alex V. Genkin,  Shiv Naga Prasad Vitaladevuni,  Lou Scheffer,  Shan Xu,  Harald F. Hess,  Richard Fetter,  Marco Cantoni,  Graham Knott, Dmitri B. Chklovskii

To Myelinate or Not to Myelinate?

Quan Wen, Dmitri B. Chklovskii

Reconstruction of Sparse Circuits Using Multi-neuronal Excitation (RESCUME).

Tao Hu, Dmitri B. Chklovskii

Maximization of the connectivity repertoire as a statistical principle governing the shapes of dendritic arbors.

Quan Wen,  Armen Stepanyants,  Guy N Elston,  Alexander Y Grosberg, Dmitri B Chklovskii

A cost-benefit analysis of neuronal morphology

Quan Wen, Dmitri B Chklovskii

Local potential connectivity in cat primary visual cortex.

Armen Stepanyants,  Judith A Hirsch,  Luis M Martinez,  Zoltán F Kisvárday,  Alex S Ferecskó, Dmitri B Chklovskii

Optimal information storage in noisy synapses under resource constraints.

Lav R Varshney,  Per Jesper Sjöström, Dmitri B Chklovskii

A Novel Automated Approach to Serial Block Face DualBeam Electron Microscopy for the Exploration of Cortical Circuits

GW  Knott ,  DC  Wall ,  H  Mulders , DB  Chklovskii ,  S  Reyntjens , BH  Lich

Wiring optimization can relate neuronal structure and function.

Beth L Chen,  David H Hall, Dmitri B Chklovskii

Segregation of the Brain into Gray and White Matter: A Design Minimizing Conduction Delays

Quan Wen, Dmitri B Chklovskii

Correction: Highly Nonrandom Features of Synaptic Connectivity in Local Cortical Circuits

Sen Song,  Per Jesper Sjöström,  Markus Reigl,  Sacha Nelson, Dmitri B Chklovskii

Neurogeometry and potential synaptic connectivity.

Armen Stepanyants, Dmitri B Chklovskii

Geometric and functional organization of cortical circuits

Gordon M G Shepherd,  Armen Stepanyants,  Ingrid Bureau, Dmitri Chklovskii,  Karel Svoboda

Highly Nonrandom Features of Synaptic Connectivity in Local Cortical Circuits

Sen Song,  Per Jesper Sjöström,  Markus Reigl,  Sacha Nelson, Dmitri B Chklovskii

Exact solution for the optimal neuronal layout problem.

Dmitri B Chklovskii

Cortical rewiring and information storage.

D B Chklovskii,  B W Mel,  K Svoboda

Synaptic Connectivity and Neuronal MorphologyTwo Sides of the Same Coin

Dmitri B Chklovskii

Class-Specific Features of Neuronal Wiring

Armen Stepanyants,  Gábor Tamás, Dmitri B Chklovskii

Biophysical constraints on neuronal branching

Orit Shefi,  Amir Harel, Dmitri B. Chklovskii,  Eshel Ben-Jacob,  Amir Ayali

Are spatial positions of dendritic and axonal branches correlated or independent?

Armen Stepanyants,  Gábor Tamás, Dmitri B. Chklovskii

Search for computational modules in the C. elegans brain

Markus Reigl,  Uri Alon, Dmitri B Chklovskii

Maps in the brain: what can we learn from them?

Dmitri B Chklovskii,  Alexei A Koulakov

Evolution as the blind engineer: wiring minimization in the brain.

Dmitri B. Chklovskii

Ocular dominance patterns and the wire length minimization: a numerical study

Alexei A Koulakov, Dmitri B Chklovskii

Power-law for axon diameters at branch point

Dmitri B Chklovskii,  Armen Stepanyants

Branching Law for Axons

Dmitri B Chklovskii,  Armen Stepanyants

Network motifs: Simple building blocks of complex networks

R Milo,  S Shen-Orr,  S Itzkovitz,  N Kashtan, D Chklovskii,  U Alon

Theoretical Neuroscience: State of the Art

Dmitri Chklovskii

Information storage capacity of synaptic connectivity patterns

Armen Stepanyants,  Patrick R. Hof, Dmitri B. Chklovskii

Direction of motion maps in the visual cortex: a wire length minimization approach

Alexei A. Koulakov, Dmitri B. Chklovskii

Wiring Optimization in Cortical Circuits

Dmitri B Chklovskii,  Thomas Schikorski,  Charles F Stevens

Geometry and Structural Plasticity of Synaptic Connectivity

Armen Stepanyants,  Patrick R Hof, Dmitri B Chklovskii

Orientation Preference Patterns in Mammalian Visual Cortex

Alexei A. Koulakov, Dmitri B. Chklovskii

A wire length minimization approach to ocular dominance patterns in mammalian visual cortex

Dmitri B Chklovskii,  Alexei A Koulakov

Optimal Sizes of Dendritic and Axonal Arbors in a Topographic Projection

Dmitri B. Chklovskii

Binocular disparity can explain the orientation of ocular dominance stripes in primate primary visual area (V1)

Dmitri B Chklovskii

Wiring Optimization in the Brain

Dmitri B. Chklovskii,  Charles F. Stevens

Consequences of a possible adiabatic transition between ν= 1/3 and ν= 1 quantum Hall states in a narrow wire

Dmitri B. Chklovskii,  Bertrand H. Halperin

New universal properties of resonant tunneling in the quantized Hall regime

Dmitri Chklovskii

Comment on “New Class of Resonances at the Edge of the Two-Dimensional Electron Gas.”

Dmitri B. Chklovskii

Theory of photoluminescence of the ν=1 quantum Hall state:Excitons, spin waves, and spin textures

N. R. Cooper, D. B. Chklovskii

Understanding the dynamics of fractional edge states with composite fermions

Dmitri B. Chklovskii,  Bertrand I. Halperin

The Structure of Fractional Edge States: A Composite Fermion Approach

Dmitri B. Chklovskii

Transport properties between quantum Hall plateaus.

DB Chklovskii,  Patrick A. Lee

Transport properties of the quantum Hall state

Dmitri Boris Chklovskii

Ballistic conductance of interacting electrons in the quantum Hall regime.

DB Chklovskii,  KA Matveev,  BI Shklovskii

Erratum: Electrostatics of edge channels [Phys. Rev. B 46, 4026 (1992)]

D. B. Chklovskii,  B. I. Shklovskii,  L. I. Glazman

Electrostatics of edge channels.

DB Chklovskii,  BI Shklovskii,  LI Glazman

Relaxation of nuclear spin in atomic hydrogen due to long-range orbital currents in metal walls.

DB Chklovskii,  PA Lee

Using neuroinformatics tools to investigate and share high-resolution full volume reconstructions of brain neuropil

Kristen Harris,  Bitao Shi,  Josef Spacek,  John Mendenhall,  Yuriy Mishchenko, Dmitri Chklovskii