134
Publications
SARS-CoV-2 titers in wastewater foreshadow dynamics and clinical presentation of new COVID-19 cases
F Wu, A Xiao, J Zhang, K Moniz, N Endo, F Armas, R. Bonneau, M Brown, M Bushman, P Chai, C Duvallet, T Erickson, K Foppe, N Ghaeli, X Gu, W Hanage, K Huang, W Lee, M Matus, K McElroy, J Nagler, S Rhode, M Santillana, J Tucker, S Wuertz, S Zhao, J Thompson, E Alm
High-Resolution Longitudinal Dynamics of the Cystic Fibrosis Sputum Microbiome and Metabolome through Antibiotic Therapy
R. Raghuvanshi, K. Vasco, Y. Vázquez-Baeza, L. Jiang, J. Morton, D. Li, A. Gonzalez, L. DeRight Goldasich, G. Humphrey, G. Ackerman, A. Swafford, D. Conrad, R. Knight, P. Dorrestein, R. Quinn
Structure-Based Protein Function Prediction using Graph Convolutional Networks
V. Gligorijevic, D. Renfrew, T Kosciolek, J. Koehler, D. Berenberg, T Vatanen, C Chandler, B Taylor, I. Fisk, H Vlamakis, R Xavier, R Knight, K Cho, R. Bonneau
Inference of Bacterial Small RNA Regulatory Networks and Integration with Transcription Factor-Driven Regulatory Networks
M Arrieta Ortiz, C Hafemeister, B Shuster, N Baliga, R. Bonneau
Macromolecular modeling and design in Rosetta: recent methods and frameworks
J. Koehler, B Weitzner, R. Bonneau
Better together: Elements of successful scientific software development in a distributed collaborative community
J. Koehler, B Weitzner, D. Renfrew, S Lewis, R Moretti, A Watkins, V. Mulligan, S Lyskov, J Adolf-Bryfogle, J Labonte, J Krys, Rosetta Commons Consortium, W Schief, D Gront, O Schueler-Furman, D Baker, J Gray, R Dunbrack, T Kortemme, A Leaver-Fay, C Strauss, J Meiler, B Kuhlman, J Gray , R. Bonneau
Visualizing ’omic feature rankings and log-ratios using Qurro
M. Fedarko, C. Martino, J. Morton, A. González, G. Rahman, C. Marotz, J. Minich, E. Allen, R. Knight
Classification of the Molecular Defects Associated with Pathogenic Variants of the SLC6A8 Creatine Transporter
M Salazar, N Zelt, R Saldivar, C Kuntz, S Chen, W Penn, R. Bonneau, J. Koehler, J Schlebach
Characterization of antibiotic resistance and host-microbiome interactions in the human upper respiratory tract during influenza infection
L Zhang, C Forst, A Gordon, G Gussin, A Gerber , P Fernandez , T Ding, L Lashua, M Wang, A Balmaseda, R. Bonneau, B Zhang, E Ghedin
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