134
Publications
Designing Peptides on a Quantum Computer
V. Mulligan, H Melo, H Merritt, S Slocum, B Weitzner, A Watkins, D. Renfrew, C Pelissier, P Arora, R. Bonneau
Metabolome-Informed Microbiome Analysis Refines Metadata Classifications and Reveals Unexpected Medication Transfer in Captive Cheetahs
J. Gauglitz, J. Morton, A. Tripathi, S. Hansen, M. Gaffney, C. Carpenter, K. Weldon, R. Shah, A. Parampil, A. Fidgett, A. Swafford, R. Knight, P. Dorrenstein
Optimal tuning of weighted kNN- and diffusion-based methods for denoising single cell genomics data
A Tjärnberg, O Mahmood, C Jackson, G Saldi, K Cho, L Christiaen, R. Bonneau
A Bayesian nonparametric approach to super-resolution single-molecule localization
M. Gabitto, H. Marie-Nelly, A. Pakman, A. Pataki, X. Darzacq, M. Jordan
Characterizing chromatin landscape from aggregate and single-cell genomic assays using flexible duration modeling
M. Gabitto, A. Rasmussen, O Wapinksi, K Allaway, N. Carriero, G Fishell, R. Bonneau
Gene regulatory network reconstruction using single-cell RNA sequencing of barcoded genotypes in diverse environments
C Jackson, D Castro, G Saldi, R. Bonneau, D Gresham
A Comprehensive Map of the Monocyte-Derived Dendritic Cell Transcriptional Network Engaged upon Innate Sensing of HIV
J Johndon, N De Veaux, A Rives, X Lahaye, S Lucas, B Perot, M Luka, V Garcia-Paredes, L Amon, A. Watters, G Abdessalem, A Aderem, N Manel , D Littman, R. Bonneau, M Ménager
A single early-in-life macrolide course has lasting effects on murine microbial network topology and immunity
V Ruiz, T Battaglia, S Kurtz, L Bijnens, A Ou, I Engstrand, X Zheng, T Iizumi, B Mullins, C. Müller, K Cadwell, R. Bonneau, G Perez-Perez, M Blaser
Integrated Analysis of Biopsies from Inflammatory Bowel Disease Patients Identifies SAA1 as a Link Between Mucosal Microbes with TH17 and TH22 Cells
M Tang, R Bowcutt, J Leung, M Wolff, U Gundra, D Hudesman, L Malter, M Poles, L Chen, Z Pei, A Neto, W Abidi, T Ullman, L Mayer, R. Bonneau, P Loke
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