Skip to content
Simons Foundation
Simons Foundation
Flatiron Institute
Computational Neuroscience
Search
  • Building Biological Intelligence Investigating how the ingredients of biological computation come together to produce a system vastly more powerful than its constituent parts

    Computational Vision Developing novel computational methods to study how the brain analyzes and represents visual information.

    High Dimensional Dynamics and Computation Developing theories linking synaptic connectivity, neuronal dynamics and computation.

    Information Processing in Neural Networks Investigating the dynamics, statistical properties and principles of information processing in biological neural circuits and artificial neural networks.

    Neural Circuits and Algorithms Studying how the brain processes complex sensory data to inform AI networks and mental health treatments.

    NeuroRSE Building open source software for computational and systems neuroscience.

    Statistical Analysis of Neural Data Developing statistical models and computational tools to extract insights from neural data.

  • People
  • Publications
  • Software & Data
  • Jobs
  • Learn more about our researchers, their latest discoveries, and related talks and lectures.

    Community

    • News
    • Events

    Connect

    • Contact
    • Media Relations
    • Visitor Information
  • Careers
    Search all
  • Funding
    Search all
  • Explore opportunities for...
    • Undergraduate students
    • Graduate students
    • Postdoctoral researchers
    • Research scientists
Simons Foundation
Flatiron Institute

Computational Neuroscience

  • Research Groups

    Building Biological Intelligence Investigating how the ingredients of biological computation come together to produce a system vastly more powerful than its constituent parts

    Computational Vision Developing novel computational methods to study how the brain analyzes and represents visual information.

    High Dimensional Dynamics and Computation Developing theories linking synaptic connectivity, neuronal dynamics and computation.

    Information Processing in Neural Networks Investigating the dynamics, statistical properties and principles of information processing in biological neural circuits and artificial neural networks.

    Neural Circuits and Algorithms Studying how the brain processes complex sensory data to inform AI networks and mental health treatments.

    NeuroRSE Building open source software for computational and systems neuroscience.

    Statistical Analysis of Neural Data Developing statistical models and computational tools to extract insights from neural data.

  • People
  • Publications
  • Software & Data
  • Jobs
  • About

    Learn more about our researchers, their latest discoveries, and related talks and lectures.

    Community

    • News
    • Events

    Connect

    • Contact
    • Media Relations
    • Visitor Information

Filters

Publication Year

Show 10 more Show less

Tag

Show 4 more Show less

Type

Simons Foundation
  • Find a Person

Bringing people and ideas together to fund, conduct, and share transformative science.

Our grants advance knowledge and strengthen connections between science and society.

Discover the latest news, research, and updates.

  • All News
  • Research News
  • Funding Announcements
  • Newsletter Sign Up
  • Press Releases
  • Media Relations

We convene scientists, mathematicians, and thinkers to share ideas and explore new questions.

  • Events Calendar
  • Public Events
  • Presidential Lectures
  • Presents
  • Flatiron Events
  • Past Events

Founded by Jim and Marilyn Simons, we’re a private philanthropy advancing mathematics and basic science.

Work with us on the frontier of basic science research.

  • All Open Positions
  • Undergraduate Students
  • Graduate Students
  • Postdocs
  • Research Scientists

The Flatiron Institute is a research center that uses computational science to advance fields like physics, biology, and astronomy.

  • Explore Flatiron Institute
  • People
  • Careers
  • Publications
  • Software & Data
  • Computational Astrophysics
  • Computational Biology
  • Computational Mathematics
  • Computational Neuroscience
  • Computational Quantum Physics
  • Computational Catalysis
Flatiron Institute
  • Autism
  • Neuroscience
  • Mathematics
  • Ecology & Evolution
  • Plant Biology
  • Grantmaking
  • Media Initiatives
  • Public Events
  • Researcher Engagement
  • National Initiatives
  • Computational Software
  • Computational Datasets
  • SFARI Base
  • Publications
  • Simons Collaboration on Localization of Waves
  • Simons Collaboration on Plasticity and the Aging Brain
  • Simons Collaboration on Principles of Microbial Ecosystems
All Collaborations
  • Policies & Procedures
  • Instructional Videos
  • Past Funded Work
  • Undergraduate Students
  • Graduate Students
  • Postdocs
  • Research Scientists
All Funding Opportunities
  • Fellows-to-Faculty
  • New Ideas
  • SFARI Conferences & Courses Awards
  • Shenoy Undergraduate Research Fellowship in Neuroscience
Autism & Neuroscience
  • Simons Graduate Fellowships in Ecology & Evolution
  • Simons Postdoctoral Fellowships in Plant Biology
  • Synthetic Plant Biology
  • Simons Collaborations in Ecology & Evolution
Life Sciences
  • Science in Culture
  • Science in Community
  • STEM Pathways
Science, Society & Culture
  • Scientific Software Research Faculty Award
  • Simons Collaborations in MPS
  • Simons Dissertation Fellowship in Mathematics
  • Simons Fellows in Mathematics
  • Targeted Grants to Institutes
  • Targeted Grants in Mathematics & Physical Sciences
  • Travel Support for Mathematicians
Mathematics & Physical Sciences
  • Pivot Fellowship
  • Simons Society of Fellows
  • Our History
  • Annual Reports
  • Visitor Information
  • Media Relations
  • Contact Us
About Us
  • Leadership
  • Board of Trustees
  • Research Staff
Search All People
  • Working Here
  • Internship Opportunities
  • Undergraduate Students
  • Graduate Students
  • Postdoctoral Students
  • Research Scientists
All Open Positions

Centers

  • Computational Astrophysics
  • Computational Biology
  • Computational Mathematics
  • Computational Neuroscience
  • Computational Quantum Physics
  • Scientific Computing Core
  • Initiative for Computational Catalysis

Collaborative Projects

  • Foundation Models of Science
  • Simons Observatory
Flatiron Institute

Search

What are you looking for?

Filter Results
A white circle with irregular, wavy, zebra-like stripes on a light gray background, creating an abstract, textured pattern.
Flatiron Institute Computational Neuroscience

Computational Neuroscience: Publications

Read the latest papers published by our researchers.

Results update as you type and when you change filters.

Skip to results

Filters

Publication Year

Show 10 more Show less

Tag

Show 4 more Show less

Type

Results

  1. Neural optimal feedback control with local learning rules

    NeurIPS, 2021

    D. Chklovskii, S. Golkar, S. Farashahi, J. Friedrich, A. Genkin, and A. Sengupta

  2. Bridging the Gap: Point Clouds for Merging Neurons in Connectomics

    arXiv:2112.02039, 2021

    J. Berman, D. Chklovskii, and J. Wu

  3. A Normative and Biologically Plausible Algorithm for Independent Component Analysis

    NeurIPS, 2021

    D. Chklovskii, Y. Bahroun, and A. Sengupta

  4. A Similarity-preserving Neural Network Trained on Transformed Images Recapitulates Salient Features of the Fly Motion Detection Circuit

    NeurIPS, 2021

    A. Sengupta, D. Chklovskii, and Y. Bahroun

  5. Adaptive Denoising via GainTuning

    NeurIPS, 2021

    E. Simoncelli and Sreyas Mohan

  6. A Neural Network with Local Learning Rules for Minor Subspace Analysis

    arXiv:2102.05501, 2021

    D. Chklovskii and Y. Bahroun

  7. Mapping Spatial Frequency Preferences Across Human Primary Visual Cortex

    Cold Spring Harbor Laboratory, 2021

    E. Simoncelli and William Broderick

  8. Small brains for big science

    Science Direct, 2021

    D. Chklovskii

  9. Unsupervised Deep Video Denoising

    arXiv:2011.15045, 2021

    E. Simoncelli and Sreyas Mohan

  10. Primary visual cortex straightens natural video trajectories

    Nature Communications, 2021

    E. Simoncelli, O.J. Hénaff, Y. Bai, J.A. Charlton, I. Nauhaus, and R.L.T. Goris

  11. Opposing effects of selectivity and invariance in peripheral vision

    Nature Communications, 2021

    Corey M. Ziemba and E. Simoncelli

  12. Pinpointing the neural signatures of single-exposure visual recognition memory

    Proceedings of the National Academy of Sciences of the United States of America, 2021

    E. Simoncelli, V. Mehrpour, T. Meyer, and N. C. Rust

  13. VolPy: automated and scalable 2 analysis pipelines for voltage 3 imaging datasets

    PLOS, 2021

    J. Friedrich, C. Cai, E. Pnevmatikakis, K. Podgorski, and A. Giovannucci

  14. Automated and scalable analysis pipelines for voltage imaging datasets

    PLOS, 2021

    J. Friedrich, E. Pnevmatikakis, C. Cai, A. Singh, M. Hossein Eybposh, K. Podgorski, et al.

  15. Comparison of Full-Reference Image Quality Models for Optimization of Image Processing Systems

    International Journal of Computer Vision, arxiv:https://arxiv.org/pdf/2005.01338.pdf, April 1, 2021

    Keyan Ding, Kede Ma, Shiqi Wang, and E. Simoncelli

  16. A biologically plausible neural network for multi-channel Canonical Correlation Analysis

    MIT Direct, 2021

    D. Lipshutz, Y. Bahroun, S. Golkar, A. Sengupta, and D. Chklovskii

  17. Sensitivity analysis for the stationary distribution of reflected Brownian motion in a convex polyhedral cone.

    Mathematics of Operations Research, February 3, 2021

    D. Lipshutz and K. Ramanan

  18. Impression learning: Online predictive coding with synaptic plasticity

    NeurIPS, 2021

    E. Simoncelli, C. Bredenberg, B. Lyo, and C. Savin

  19. Online analysis of microendoscopic 1-photon calcium imaging data streams

    PLOS, 2021

    A. Giovannucci, J. Friedrich, and E. Pnevmatikakis

  20. CaImAn an open source tool for scalable calcium imaging data analysis

    eLife, 2021

    J. Friedrich, P. Gunn, A. Giovannucci, J. Kalfon, B. Brown, S. Koay, et al.

  21. Stochastic Solutions for Linear Inverse Problems using the Prior Implicit in a Denoiser

    NeurIPS21, arxiv:, 2021

    Z. Kadkhodaie and E. Simoncelli

  22. Interpretable Image Clustering via Diffeomorphism-Aware K-Means

    arxiv:2012.09743, 2020

    R. Cosentino, Y. Bahroun, R. Balestriero, A. Sengupta, B. Aazhang, and R. Baraniuk

  23. A biologically plausible neural network for local supervision in cortical microcircuits

    arxiv:2011.15031, 2020

    A. Sengupta, S. Golkar, D. Lipshutz, D. Chklovskii, and Y. Bahroun

  24. Biologically plausible single-layer networks for nonnegative independent component analysis

    arxiv:2010.12632, 2020

    D. Lipshutz, C. Pehlevan, and D. Chklovskii

  25. A biologically plausible neural network for Slow Feature Analysis

    Neural Information Processing Systems 33, 2020

    D. Lipshutz, C. Windorf, S. Golkar, and D. Chklovskii

  26. A simple normative network approximates local non-Hebbian learning in the cortex

    Advances in Neural Information Processing Systems 33, arxiv:2010.12660, 2020

    A. Sengupta, D. Lipshutz, Y. Bahroun, S. Golkar, and D. Chklovskii

  27. Learning arbitrary stimulus-reward associations for naturalistic stimuli involves transition from learning about features to learning about objects

    Science Direct, 2020

    J. Xu, S. Farashahi, and A. Soltani

  28. Efficient coding of natural scene statistics predicts discrimination thresholds for grayscale textures

    eLife, arXiv:1912.05433, August 3, 2020

    T. Tesileanu, J. Briguglio, A. Hermundstad, J. Victor, and V. Balasubramanian

  29. Neurons as Canonical Correlation Analyzers

    Frontiers in Computational Neuroscience, arxiv:2010.00525, June 30, 2020

    D. Chklovskii, A. Sengupta, and C. Pehlevan

  30. Customer-server population dynamics in heavy traffic

    Stochastic Systems, 2020

    R. Atar, P. Karmakar, and D. Lipshutz

  31. Neuronal Gaussian Process Regression

    Advances in Neural Information Processing Systems 33, NIPS Proceedings, 2020

    J. Friedrich

  32. Neuroscience-Inspired Online Unsupervised Learning Algorithms: Artificial Neural Networks

    IEEE Signal Processing Magazine, 2019

    D. Chklovskii and C. Pehlevan

  33. Bright and photostable chemigenetic indicator for extended in vivo voltage imaging

    SCI, 2019

    J. Friedrich, A. Abdelfattah, T. Kawashima, A. Singh, O. Novak, H. Liu, et al.

  34. Clustering is semi-definitely not that hard: Nonnegative SDP for manifold disentangling

    Journal of Machine Learning Research, 2018

    M. Tepper, A. Sengupta, and D. Chklovskii

  35. Biologically Plausible Online Principal Component Analysis Without Recurrent Neural Dynamics

    arXiv:1810.06966, October 16, 2018

    V. Minden, C. Pehlevan, and D. Chklovskii

  36. Flexibility in motor timing constrains the topology and dynamics of pattern generator circuits

    Nature Communications, 2018

    C. Pehlevan, F. Ali, and B.P. Olveczky

  37. Holography, Fractals and the Weyl Anomaly

    arXiv:1802.05362, February 14, 2018

    Gerald Guralnik, Zachary Guralnik, and C. Pehlevan

  38. Why Do Similarity Matching Objectives Lead to Hebbian/Anti-Hebbian Networks?

    MIT Press Direct, 2018

    D. Chklovskii, A. Sengupta, and Cengiz Pehlevan

  39. A clustering neural network model of insect olfaction

    BioRxiv, November 30, 2017

    C. Pehlevan, A Genkin, and D. Chklovskii

  40. NoRMCorre: An online algorithm for piecewise rigid motion correction of calcium imaging data

    Journal of Neuroscience Methods, November 1, 2017

    E. Pnevmatikakis and A. Giovannucci

  41. Blind Nonnegative Source Separation Using Biological Neural Networks

    Neural Computation, arXiv:1706.00382, October 17, 2017

    C. Pehlevan, S. Mohan, and D. Chklovskii

  42. OnACID: Online Analysis of Calcium Imaging Data in Real Time, Advances

    Advances in Neural Information Processing Systems, October 2, 2017

    A. Giovannucci, J. Friedrich, M Kaufman, A Churchland, D. Chklovskii, L Paninski, et al.

  43. Automated gesture tracking in head-fixed mice

    Journal of Neuroscience Methods, July 17, 2017

    A. Giovannucci, E. Pnevmatikakis, B Deverett, T Pereira, J Fondriest, M Brady, et al.

  44. The surprising secret identity of the semidefinite relaxation of K-means: manifold learning

    arXiv:1706.06028, June 19, 2017

    M. Tepper, A.M. Sengupta, and D. Chklovskii

  45. Resource-efficient perceptron has sparse synaptic weight distribution

    Signal Processing and Communications Applications Conference (SIU), 2017 25th, May 16, 2017

    C. Pehlevan and A. Sengupta

  46. The comprehensive connectome of a neural substrate for ‘ON’ motion detection in Drosophila

    eLife, 2017

    D. Chklovskii, S.Takemura, A. Nern, L. Scheffer, G. Rubin, and I. Meinertzhagen

  47. The comprehensive connectome of a neural substrate for ‘ON’ motion detection in Drosophila

    eLife, April 22, 2017

    S. Takemura, A. Nern, D. Chklovskii, L.K. Scheffer, G. Rubin, and I.A. Meinertzhagen

  48. Why do similarity matching objectives lead to Hebbian/anti-Hebbian networks?

    arXiv:1703.07914, March 23, 2017

    C. Pehlevan, A. Sengupta, and D. Chklovskii

  • Prev
  • 1
  • 2
  • 3
  • 4
  • 5
  • Page 4 of 5
  • Next

About

  • About Us
  • History
  • Annual Reports
  • People
  • Visitor Information
  • Careers

Funding

  • Funding Opportunities
  • Funded Work
  • Simons Award Manager
  • Simons Foundation International
  • Policies & Procedures

Program Areas

  • Life Sciences
  • Autism & Neuroscience
  • Mathematics & Physical Sciences
  • Science, Society & Culture

Connect

  • Newsletters
  • Events
  • Contact us
  • Media Relations
  • Terms & Conditions
  • Privacy Policy
Simons Foundation
Bluesky Facebook Instagram YouTube X RSS Feed

Advancing Research in Basic 
Science and Mathematics

Customize your preferences

Your preferences have been saved.

Confirm your subscription by clicking the link in the email we sent.