Computational Biology: Publications
Read the latest papers published by our research teams.
Results
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Generative model for the first cell fate bifurcation in mammalian development
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Stochastic Process Inference Without Trajectories: A Probabilistic Approach
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Stochastic Process Inference Without Trajectories: A Probabilistic Approach
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Geometric, cell cycle and maternal-to-zygotic transition-associated YAP dynamics during preimplantation embryo development
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Stability of co-annular active and passive confined fluids
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In silico, in vitro and ex vivo characterization of cystic fibrosis transmembrane conductance regulator pathogenic variants localized in the fourth intracellular loop and their rescue by modulators
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seekrflow: Towards end-to-end automated simulation pipeline with machine-learned force fields for accelerated drug-target kinetic and thermodynamic predictions
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seekrflow: Towards end-to-end automated simulation pipeline with machine-learned force fields for accelerated drug-target kinetic and thermodynamic predictions
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Study of Protein-Protein Interactions in Septin Assembly: Multiple amphipathic helix domains cooperate in binding to the lipid membrane
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Study of Protein-Protein Interactions in Septin Assembly: Multiple amphipathic helix domains cooperate in binding to the lipid membrane
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Velocity optimization of self-equilibrated obstacles in a two-dimensional viscous flow
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Velocity optimization of self-equilibrated obstacles in a two-dimensional viscous flow
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Quantitative and Predictive Folding Models from Limited Single-Molecule Data Using Simulation-Based Inference
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Quantitative and Predictive Folding Models from Limited Single-Molecule Data Using Simulation-Based Inference
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Nuclear biophysics: Spatial coordination of transcriptional dynamics?
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Methylation Data Analysis and Interpretation
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Active Liquid Crystal Theory Explains the Collective Organization of Microtubules in Human Mitotic Spindles
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Large protein databases reveal structural complementarity and functional locality
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The physical consequences of sperm gigantism
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Altruistic Resource-Sharing Mechanism for Synchronization: The Energy-Speed-Accuracy Trade-off
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Representational drift and learning-induced stabilization in the piriform cortex
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Prediction of local convergent shifts in evolutionary rates with phyloConverge
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Representational drift and learning-induced stabilization in the piriform cortex
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The Fruit Fly Auxodrome: a computer vision setup for longitudinal studies of Drosophila development
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The open-source Masala software suite: Facilitating rapid methods development for synthetic heteropolymer design
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Decomposition of phenotypic heterogeneity in autism reveals underlying genetic programs
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Flat Elastic Disc Suspensions Are Indistinguishable from Solutions of Long Flexible Polymers within Planar Incompressible Flows
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Neurons exploit stochastic growth to rapidly and economically build dense dendritic arbors
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Electrohydrodynamic drift of a drop away from an insulating wall
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Integrated single-cell multiome analysis reveals muscle fiber-type gene regulatory circuitry modulated by endurance exercise
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A live-cell biosensor of in vivo receptor tyrosine kinase activity reveals feedback regulation of a developmental gradient
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Sequestration of ribosome biogenesis factors in HSV- 1 nuclear aggregates revealed by spatially resolved thermal profiling
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Microtubules in Martini: Parameterizing a heterogeneous elastic-network towards a mechanically accurate microtubule
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Microtubules in Martini: Parameterizing a heterogeneous elastic-network towards a mechanically accurate microtubule
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Spatial-Temporal Pre-Training for Embryo Viability Prediction Using Time-Lapse Videos
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RocketSHP: Ultra-fast Proteome-scale Prediction of Protein Dynamics
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RocketSHP: Ultra-fast Proteome-scale Prediction of Protein Dynamics
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ExEnDiff: An Experiment-Guided Diffusion Model for Protein Conformational Ensemble Generation
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ExEnDiff: An Experiment-Guided Diffusion Model for Protein Conformational Ensemble Generation
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Nonlinear spontaneous flow instability in active nematics
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Amortized template matching of molecular conformations from cryoelectron microscopy images using simulation-based inference
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Amortized template matching of molecular conformations from cryoelectron microscopy images using simulation-based inference
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Generation of fate patterns via intercellular forces
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CXCR4+ mammary gland macrophageal niche promotes tumor initiating cell activity and immune suppression during tumorigenesis
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Correlations, mean-field limits, and transition to the concentrated regime in motile particle suspensions
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Inferring stochastic dynamics with growth from cross-sectional data
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Biomolecular condensates control and are defined by RNA-RNA interactions that arise in viral replication
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Investigating the membrane curvature sensing ability of the N-terminal domain of huntingtin