Computational Biology: Publications
Read the latest papers published by our research teams.
Results
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Dissipation and energy propagation across scales in an active cytoskeletal material
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Folding and modulation of the helical conformation of Glycophorin A by point mutations
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Docking cholesterol to integral membrane proteins with Rosetta
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Collective Motion and Pattern Formation in Phase-Synchronizing Active Fluids
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The fluidic memristor: collective phenomena in elastohydrodynamic networks
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Molecular basis of polyglutamine-modulated ELF3 aggregation in Arabidopsis temperature response
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Stochastic phenotypes in RAS-dependent developmental diseases
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Dynamics of an incoherent feedforward loop drive ERK-dependent pattern formation in the early Drosophila embryo
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Evolutionary history of MEK1 illuminates the nature of cancer and RASopathy mutations
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Spindle dynamics and orientation depends in forge generators configuration
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Anillin Related Mid1 as an Adaptive and Multimodal Contractile Ring Anchoring Protein: A Simulation Study
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Flow-network-controlled shape transformation of a thin membrane through differential fluid storage and surface expansion
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Blood RNA alternative splicing events as diagnostic biomarkers for infectious disease
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Fusome topology and inheritance during insect gametogenesis
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Oral mucosal breaks trigger anti-citrullinated bacterial and human protein antibody responses in rheumatoid arthritis
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Connection between MHC class II binding and aggregation propensity: The antigenic peptide 10 of Paracoccidioides brasiliensis as a benchmark study
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Omicron mutations increase interdomain interactions and reduce epitope exposure in the SARS-CoV-2 spike
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Emergent properties of collective gene-expression patterns in multicellular systems
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Multiple polarity kinases inhibit phase separation of F-BAR protein Cdc15 and antagonize cytokinetic ring assembly in fission yeast
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Patterning potential of the terminal system in the Drosophila embryo
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Live Imaging of Nurse Cell Behavior in Late Stages of Drosophila Oogenesis
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Fluorescent azobenzene-confined coiled-coil mesofibers
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Dynamics of Flexible Filaments in Oscillatory Shear Flows
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Steps of actin filament branch formation by Arp2/3 complex investigated with coarse-grained molecular dynamics
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Fluid circulation driven by collectively organized metachronal waves in swimming T. aceti nematodes
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Concurrent ARFI Plaque Imaging and Wall Shear Stress Measurement in Human Carotid Artery, with Validation by Fluid Structure Interaction Model.
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Identifying genes and pathways linking astrocyte regional specificity to Alzheimer’s disease susceptibility
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How to Design Peptides
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Incompressible active phases at an interface. Part 1. Formulation and axisymmetric odd flows
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The physical basis of self-organization of the mammalian oocyte spindle
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Pre-infection antiviral innate immunity contributes to sex differences in SARS-CoV-2 infection
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Multibody molecular docking on a quantum annealer
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Dynamics, scaling behavior, and control of nuclear wrinkling
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Forced and spontaneous symmetry breaking in cell polarization
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Accurate de novo design of membrane-traversing macrocycles
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Quadrature by fundamental solutions: kernel-independent layer potential evaluation for large collections of simple objects
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Mechanics of stabilized intercellular bridges
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The role of monolayer viscosity in Langmuir film hole closure dynamics
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Canary in the cardiac-valve coal mine: Flow velocity and inferred shear during prosthetic valve closure –predictors of blood damage and clotting
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Independently paced Ca2+ oscillations in progenitor and differentiated cells in an ex vivo epithelial organ
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Evaluating the Conformations and Dynamics of Peptoid Macrocycles
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A sequence-based global map of regulatory activity for deciphering human genetics
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Weakly nonlinear analysis of pattern formation in active suspensions
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Self-organized flows in phase-synchronizing active fluids
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Parallel Discrete Convolutions on Adaptive Particle Representations of Images
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A reference tissue atlas for the human kidney
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Molecular Characterization of Membranous Nephropathy
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Sex-specific topological differences in germline cell lineage trees