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Featured

Dissecting mechanisms of hyperarousal in autism and related disorders using the Simons Sleep Project

Funded Work

Gravity Follows Newton’s and Einstein’s Rules, Even at Cosmic Scales

April 15, 2026

Scientists Capture Superconductivity’s ‘Dancing Pairs’ for First Time, Filling Gap in Decades-Old Theory

April 15, 2026

How SURFiN Fellowships Jump-Started These 3 Neuroscience Students’ STEM Careers

March 18, 2026

Topology and Complexity

November 19, 2014

Results

  1. Reproducibility and model-selection stability in connectome-constrained circuit modeling

    Publication
    Connectome-constrained neural network models aim to link anatomical connectivity with functional computation by training networks whose architectures reflect biological circuits. Because such models are increasingly used to …
  2. A Network of Biologically Inspired Rectified Spectral Units (ReSUs) Learns Hierarchical Features Without Error Backpropagation

    Publication
    We introduce a biologically inspired, multilayer neural architecture composed of Rectified Spectral Units (ReSUs). Each ReSU projects a recent window of its input history onto a canonical direction …
  3. Neurons as Detectors of Coherent Sets in Sensory Dynamics

    Publication
    We model sensory streams as observations from high-dimensional stochastic dynamical systems and conceptualize sensory neurons as self-supervised learners of compact representations of such dynamics. From prior …
  4. Correcting Non-Uniform Milling in FIB-SEM Images with Unsupervised Cross-Plane Image-to-Image Translation

    Publication
    Motivation Focused Ion Beam Scanning Electron Microscopy (FIB-SEM) is an advanced Volume Electron Microscopy technology with growing applications, featuring thinner sectioning compared to other Volume Electron Microscopes …
  5. The first complete 3D reconstruction and morphofunctional mapping of an insect eye

    Publication
    The structure of compound eyes in arthropods has been the subject of many studies, revealing important biological principles. Until recently, these studies were constrained by the two-dimensional …
  6. Sub-cellular population imaging tools reveal stable apical dendrites in hippocampal area CA3

    Publication
    Apical and basal dendrites of pyramidal neurons receive anatomically and functionally distinct inputs, implying compartment-level functional diversity during behavior. To test this, we imaged in vivo calcium …
  7. High-fidelity Image Restoration of Large 3D Electron Microscopy Volume

    Publication
    Volume electron microscopy (VEM) is an essential tool for studying biological structures. Due to the challenges of sample preparation and continuous volumetric imaging, image artifacts are almost inevitable …
  8. The neuron as a direct data-driven controller

    Publication
    … imprecision in spike generation under constant stimulation, and the characteristic operational variability and noise in the brain. Our model presents a significant departure from the traditional, feedforward …
  9. Neuronal Temporal Filters as Normal Mode Extractors

    Publication
    To generate actions in the face of physiological delays, the brain must predict the future. Here we explore how prediction may lie at the core of brain function …
  10. Adaptive whitening with fast gain modulation and slow synaptic plasticity

    Publication
    Neurons in early sensory areas rapidly adapt to changing sensory statistics, both by normalizing the variance of their individual responses and by reducing correlations between their responses. Together …
  11. Normative framework for deriving neural networks with multi-compartmental neurons and non-Hebbian plasticity

    Publication
    An established normative approach for understanding the algorithmic basis of neural computation is to derive online algorithms from principled computational objectives and evaluate their compatibility with anatomical and …
  12. Unlocking the Potential of Similarity Matching: Scalability, Supervision and Pre-training

    Publication
    While effective, the backpropagation (BP) algorithm exhibits limitations in terms of biological plausibility, computational cost, and suitability for online learning. As a result, there has been a growing …
  13. Catalyzing next-generation Artificial Intelligence through NeuroAI

    Publication
  14. Catalyzing next-generation [Artificial Intelligence} through {NeuroAI}

    Publication
    Neuroscience has long been an essential driver of progress in artificial intelligence (AI). We propose that to accelerate progress in AI, we must invest in fundamental research in …
  15. Catalyzing next-generation Artificial Intelligence through NeuroAI

    Publication
    Neuroscience has long been an essential driver of progress in artificial intelligence (AI). We propose that to accelerate progress in AI, we must invest in fundamental research in …
  16. Coordinated drift of receptive fields in Hebbian/anti-Hebbian network models during noisy representation learning

    Publication
    Recent experiments have revealed that neural population codes in many brain areas continuously change even when animals have fully learned and stably perform their tasks. This representational ‘drift …
  17. Neural Circuits for Dynamics-Based Segmentation of Time Serie

    Publication
    The brain must extract behaviorally relevant latent variables from the signals streamed by the sensory organs. Such latent variables are often encoded in the dynamics that generated the …
  18. Neural optimal feedback control with local learning rules

    Publication
    A major problem in motor control is understanding how the brain plans and executes proper movements in the face of delayed and noisy stimuli. A prominent framework for …
  19. Bridging the Gap: Point Clouds for Merging Neurons in Connectomics

    Publication
    In the field of Connectomics, a primary problem is that of 3D neuron segmentation. Although deep learning-based methods have achieved remarkable accuracy, errors still exist, especially in …
  20. A Normative and Biologically Plausible Algorithm for Independent Component Analysis

    Publication
    The brain effortlessly solves blind source separation (BSS) problems, but the algorithm it uses remains elusive. In signal processing, linear BSS problems are often solved by Independent Component …
  21. A Similarity-preserving Neural Network Trained on Transformed Images Recapitulates Salient Features of the Fly Motion Detection Circuit

    Publication
    Learning to detect content-independent transformations from data is one of the central problems in biological and artificial intelligence. An example of such problem is unsupervised learning of …
  22. A Neural Network with Local Learning Rules for Minor Subspace Analysis

    Publication
    The development of neuromorphic hardware and modeling of biological neural networks requires algorithms with local learning rules. Artificial neural networks using local learning rules to perform principal subspace …
  23. Small brains for big science

    Publication
    As the study of the human brain is complicated by its sheer scale, complexity, and impracticality of invasive experiments, neuroscience research has long relied on model organisms. The …
  24. A biologically plausible neural network for multi-channel Canonical Correlation Analysis

    Publication
    Cortical pyramidal neurons receive inputs from multiple distinct neural populations and integrate these inputs in separate dendritic compartments. We explore the possibility that cortical microcircuits implement Canonical Correlation …
  25. CaImAn an open source tool for scalable calcium imaging data analysis

    Publication
    Advances in fluorescence microscopy enable monitoring larger brain areas in-vivo with finer time resolution. The resulting data rates require reproducible analysis pipelines that are reliable, fully automated …
  26. A biologically plausible neural network for local supervision in cortical microcircuits

    Publication
    The back propagation algorithm is an invaluable tool for training artificial neural networks; however, because of a weight sharing requirement, it does not provide a plausible model of …
  27. Biologically plausible single-layer networks for nonnegative independent component analysis

    Publication
    Blind source separation, the problem of separating mixtures of unknown signals into their distinct sources, is an important problem for both biological and engineered signal processing systems. Nonnegative …
  28. A biologically plausible neural network for Slow Feature Analysis

    Publication
    Learning latent features from time series data is an important problem in both machine learning and brain function. One approach, called Slow Feature Analysis (SFA), leverages the slowness …
  29. A simple normative network approximates local non-Hebbian learning in the cortex

    Publication
    To guide behavior, the brain extracts relevant features from high-dimensional data streamed by sensory organs. Neuroscience experiments demonstrate that the processing of sensory inputs by cortical neurons …
  30. Neurons as Canonical Correlation Analyzers

    Publication
    Normative models of neural computation offer simplified yet lucid mathematical descriptions of murky biological phenomena. Previously, online Principal Component Analysis (PCA) was used to model a network of …
  31. Neuroscience-Inspired Online Unsupervised Learning Algorithms: Artificial Neural Networks

    Publication
    Inventors of the original artificial neural networks (ANNs) derived their inspiration from biology [1]. However, today, most ANNs, such as backpropagation-based convolutional deeplearning networks, resemble natural NNs …
  32. CaImAn an open source tool for scalable calcium imaging data analysis.

    Publication
    Advances in fluorescence microscopy enable monitoring larger brain areas in-vivo with finer time resolution. The resulting data rates require reproducible analysis pipelines that are reliable, fully automated …
  33. Clustering is semi-definitely not that hard: Nonnegative SDP for manifold disentangling

    Publication
    In solving hard computational problems, semidefinite program (SDP) relaxations often play an important role because they come with a guarantee of optimality. Here, we focus on a popular …
  34. Biologically Plausible Online Principal Component Analysis Without Recurrent Neural Dynamics

    Publication
    Artificial neural networks that learn to perform Principal Component Analysis (PCA) and related tasks using strictly local learning rules have been previously derived based on the principle of …
  35. Why Do Similarity Matching Objectives Lead to Hebbian/Anti-Hebbian Networks?

    Publication
    Modeling self-organization of neural networks for unsupervised learning using Hebbian and anti-Hebbian plasticity has a long history in neuroscience. Yet derivations of single-layer networks with …
  36. Why Do Similarity Matching Objectives Lead to Hebbian / Anti-Hebbian Networks?

    Publication
    Modeling self-organization of neural networks for unsupervised learning using Hebbian and anti-Hebbian plasticity has a long history in neuroscience. Yet, derivations of single-layer networks with …
  37. A clustering neural network model of insect olfaction

    Publication
  38. Blind Nonnegative Source Separation Using Biological Neural Networks

    Publication
  39. OnACID: Online Analysis of Calcium Imaging Data in Real Time, Advances

    Publication
    Optical imaging methods using calcium indicators are critical for monitoring the activity of large neuronal populations in vivo. Imaging experiments typically generate a large amount of data that …
  40. The surprising secret identity of the semidefinite relaxation of K-means: manifold learning

    Publication
    In recent years, semidefinite programs (SDP) have been the subject of interesting research in the field of clustering. In many cases, these convex programs deliver the same answers …
  41. The comprehensive connectome of a neural substrate for ‘ON’ motion detection in Drosophila

    Publication
    Analysing computations in neural circuits often uses simplified models because the actual neuronal implementation is not known. For example, a problem in vision, how the eye detects image …
  42. The comprehensive connectome of a neural substrate for ‘ON’ motion detection in Drosophila

    Publication
    Analysing computations in neural circuits often uses simplified models because the actual neuronal implementation is not known. For example, a problem in vision, how the eye detects image …
  43. Why do similarity matching objectives lead to Hebbian/anti-Hebbian networks?

    Publication
    Modeling self-organization of neural networks for unsupervised learning using Hebbian and anti-Hebbian plasticity has a long history in neuroscience. Yet, derivations of single-layer networks with …
  44. Neocortex: a lean mean memory storage machine

    Publication
    Connectivity patterns of neocortex exhibit several odd properties: for example, most neighboring excitatory neurons do not connect, which seems curiously wasteful. Brunel’s elegant theoretical treatment reveals how …
  45. Neocortex: a lean mean storage machine

    Publication
    Connectivity patterns of neocortex exhibit several odd properties: for example, most neighboring excitatory neurons do not connect, which seems curiously wasteful. Brunel’s elegant theoretical treatment reveals how …
  46. Derivation of Neural Circuits from the Similarity Matching Principle

    Publication
    Our brains analyze high-dimensional datasets streamed by our sensory organs in multiple stages. Sensory cortices, for example, perform tasks like dimensionality reduction, sparse feature discovery and clustering …
  47. Do retinal ganglion cells project natural scenes to their principal subspace and whiten them?

    Publication
    Several theories of early sensory processing suggest that it whitens sensory stimuli. Here, we test three key predictions of the whitening theory using recordings from 152 ganglion cells …
  48. Self-calibrating neural networks for dimensionality reduction

    Publication
    Recently, a novel family of biologically plausible online algorithms for reducing the dimensionality of streaming data has been derived from the similarity matching principle. In these algorithms, the …
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