Publications

Rank-normalization, folding, and localization: An improved \(R\) for assessing convergence of MCMC

Aki Vehtari, Andrew Gelman, Daniel Simpson, B. Carpenter, Paul-Christian Bürkner

Adaptive Monte Carlo augmented with normalizing flows

M. Gabrié, Grant M. Rotskoff, E. Vanden-Eijnden

AI-assisted super-resolution cosmological simulations

Y. Li, Yueying Ni, Rupert A. C. Croft, Tiziana Di Matteo, Simeon Bird, Yu Feng

Single-cell gene regulatory network inference at scale: The Inferelator 3.0

C. Skok Gibbs, C. Jackson, G. Saldi, A. Shah, A. Tjärnberg, A. Watters, N. De Veaux, K. Tchourine, R. Yi, T. Hamamsy, D. Castro, N. Carriero, D. Gresham, E. Miraldi, R. Bonneau

A stable and accurate scheme for solving the Stefan problem coupled with natural convection using the Immersed Boundary Smooth Extension method

J. Huang, M. Shelley, D. Stein

SynNotch-CAR T cells overcome challenges of specificity, heterogeneity, and persistence in treating glioblastoma

J. Choe, P. Watchmaker, M. Simic , ..., O. Troyanskaya, et al.

MHCEpitopeEnergy, a Flexible Rosetta-Based Biotherapeutic Deimmunization Platform

B. Yachnin, V. Mulligan, S. Khare, C. Bailey-Kellogg

Low rank compression in the numerical solution of the nonequilibrium Dyson equation

J. Kaye, D. Golez

Tissue-specific enhancer functional networks for associating distal regulatory regions to disease

X. Chen, J. Zhou, R. Zhang, A. Wong, C. Park, C. Theesfeld, O. Troyanskaya

Modeling transcriptional regulation of model species with deep learning

E. Cofer, J. Raimundo, A. Tadych, Y. Yamazaki, A. Wong, C. Theesfeld, M. Levine, O. Troyanskaya