Publications

cuFINUFFT: a load-balanced GPU library for general-purpose nonuniform FFTs

Yu-hsuan Shih, Garrett Wright, Joakim Andén, Johannes Blaschke, A. Barnett

Mapping parameter spaces of biological switches

R. Diegmiller, L. Zhang, M. Gamiero, J. Barr, J. Alsous, P. Schedl, S. Shvartsman, K. Mischaikow

Chiral crystals self-knead into whorls

E. Bililign, F. Balboa Usabiaga, Y. Ganan, V. Soni, S. Magkiriadou, M. Shelley, D. Bartolo, W. Irvine

A Bayesian approach for extracting free energy profiles from cryo-electron microscopy experiments using a path collective variable

Julian Giraldo-Barreto, Sebastian Ortiz, E. Thiede, Karen Palacio-Rodriguez, B. Carpenter, A. Barnett, Pilar Cossio

mRNA-1273 efficacy in a severe COVID-19 model: attenuated activation of pulmonary immune cells after challenge

M. Meyer, Y. Wang, D. Edwards, G. Smith, A. Rubenstein, P. Ramanathan, C. Mire, C. Pietzch, X. Chen, Y. Ge, W. Cheng, C. Henry, A. Woods, L. Ma, G. Stewart-Jones, K. Bock, M. Minai, B. Nagata, S. Periasamy, P. Shi, B. Graham, I. Moore, I. Ramos, O. Troyanskaya, E. Zaslavsky, A. Carfi, S. Sealfon, A. Bukreyev

A fast spectral method for electrostatics in doubly-periodic slit channels

Ondrej Maxian, Raul P. Peláez, L. Greengard, Aleksandar Donev

Genome-wide landscape of RNA-binding protein target site dysregulation reveals a major impact on psychiatric disorder risk

C. Park, J. Zhou, A. Wong, K. Chen, C. Theesfeld, R. Darnell, O. Troyanskaya

Identifying intracellular signaling modules and exploring pathways associated with breast cancer recurrence

X. Chen, J. Gu, A. Neuwald, L. Hilakivi-Clarke, R. Clarke, J. Xuan

Efficient high-order accurate Fresnel diffraction via areal quadrature and the nonuniform FFT

A. Barnett

An “individualist” model of an active genome in a developing embryo

S. Huang, S. Dutta, P. Whitney, S. Shvartsman, C. Rushlow