Simons Foundation

Publications

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c-lasso – a Python package for constrained sparse and robust regression and classification

Léo Simpson, Patrick L Combettes, C. Müller

Solving Fredholm second-kind integral equations with singular right-hand sides on non-smooth boundaries

Johan Helsing, S. Jiang

Application of ensemble pharmacophore-based virtual screening to the discovery of novel antimitotic tubulin inhibitors

Laura Gallego-Yerga, Rodrigo Ochoa, Isaías Lans, Carlos Peña-Varas, Melissa Alegría-Arcos, P. Cossio, David Ramírez, Rafael Peláez

Decoding disease: from genomes to networks to phenotypes

A. Wong, R. Sealfon, Chandra L. Theesfeld, O. Troyanskaya

COP-E-CAT: Cleaning and Organization Pipeline for EHR Computational and Analytic Tasks

Aishwarya Mandyam, Elizabeth C. Yoo, J. Soules, Krzysztof Laudanski, Barbara E. Engelhardt

Opposing effects of selectivity and invariance in peripheral vision

Corey M. Ziemba, E. P. Simoncelli

ChIP-GSM: Inferring active transcription factor modules to predict functional regulatory elements

X. Chen, Andrew F. Neuwald, Leena Hilakivi-Clarke, Robert Clarke, Jianhua Xuan

Realizing a dynamical topological phase in a trapped-ion quantum simulator

P. Dumitrescu, Justin Bohnet, John Gaebler, Aaron Hankin, David Hayes, Ajesh Kumar, Brian Neyenhuis, Romain Vasseur, Andrew C. Potter

Machine learning methods to model multicellular complexity and tissue specificity

R. Sealfon, A. Wong, O. Troyanskaya

Tree-aggregated predictive modeling of microbiome data

Jacob Bien, Xiaohan Yan, Léo Simpson, C. Müller

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