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  • Bringing people and ideas together to fund, conduct, and share transformative science.

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  • Founded by Jim and Marilyn Simons, we’re a private philanthropy advancing mathematics and basic science.

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Bringing people and ideas together to fund, conduct, and share transformative science.

Our grants advance knowledge and strengthen connections between science and society.

Discover the latest news, research, and updates.

  • All News
  • Research News
  • Funding Announcements
  • Newsletter Sign Up
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We convene scientists, mathematicians, and thinkers to share ideas and explore new questions.

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  • Presidential Lectures
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Founded by Jim and Marilyn Simons, we’re a private philanthropy advancing mathematics and basic science.

Work with us on the frontier of basic science research.

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The Flatiron Institute is a research center that uses computational science to advance fields like physics, biology, and astronomy.

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Featured

Dissecting mechanisms of hyperarousal in autism and related disorders using the Simons Sleep Project

Funded Work

Gravity Follows Newton’s and Einstein’s Rules, Even at Cosmic Scales

April 15, 2026

Scientists Capture Superconductivity’s ‘Dancing Pairs’ for First Time, Filling Gap in Decades-Old Theory

April 15, 2026

How SURFiN Fellowships Jump-Started These 3 Neuroscience Students’ STEM Careers

March 18, 2026

Results

  1. Deleterious coding variation associated with autism is consistent across populations, as exemplified by admixed Latin American populations.

    Publication
  2. Rare coding variation provides insight into the genetic architecture and phenotypic context of autism.

    Publication
  3. SCEPTRE improves calibration and sensitivity in single-cell CRISPR screen analysis.

    Publication
  4. An approach to gene-based testing accounting for dependence of tests among nearby genes.

    Publication
  5. How rare and common risk variation jointly affect liability for autism spectrum disorder.

    Publication
  6. Bayesian estimation of cell-type-specific gene expression with prior derived from single-cell data.

    Publication
  7. Exponential-family embedding with application to cell developmental trajectories for single-cell RNA-seq data.

    Publication
  8. H-MAGMA, inheriting a shaky statistical foundation, yields excess false positives.

    Publication
  9. De novo missense variants disrupting protein-protein interactions affect risk for autism through gene co-expression and protein networks in neuronal cell types.

    Publication
  10. A selective inference approach for false discovery rate control using multiomics covariates yields insights into disease risk.

    Publication
  11. Whole-genome and RNA sequencing reveal variation and transcriptomic coordination in the developing human prefrontal cortex.

    Publication
  12. Large-scale exome sequencing study implicates both developmental and functional changes in the neurobiology of autism.

    Publication
  13. Using multiple measurements of tissue to estimate cell-type-specific gene expression via deconvolution.

    Publication
  14. Identification of common genetic risk variants for autism spectrum disorder.

    Publication
  15. Genome-wide de novo risk score implicates promoter variation in autism spectrum disorder.

    Publication
  16. An interactome perturbation framework prioritizes damaging missense mutations for developmental disorders.

    Publication
  17. An analytical framework for whole-genome sequence association studies and its implications for autism spectrum disorder.

    Publication
  18. Refining the role of de novo protein-truncating variants in neurodevelopmental disorders by using population reference samples.

    Publication
  19. Insights into autism spectrum disorder genomic architecture and biology from 71 risk loci.

    Publication
  20. The autism-associated chromatin modifier CHD8 regulates other autism risk genes during human neurodevelopment.

    Publication
  21. De novo insertions and deletions of predominantly paternal origin are associated with autism spectrum disorder.

    Publication
  22. A framework for the interpretation of de novo mutation in human disease.

    Publication
  23. Transcriptional consequences of 16p11.2 deletion and duplication in mouse cortex and multiplex autism families.

    Publication
  24. DAWN: A framework to identify autism genes and subnetworks using gene expression and genetics.

    Publication
  25. Coexpression networks implicate human midfetal deep cortical projection neurons in the pathogenesis of autism.

    Publication
  26. Integrated model of de novo and inherited genetic variants yields greater power to identify risk genes.

    Publication
  27. Rare complete knockouts in humans: Population distribution and significant role in autism spectrum disorders.

    Publication
  28. The autism sequencing consortium: Large-scale, high-throughput sequencing in autism spectrum disorders.

    Publication
  29. Common genetic variants, acting additively, are a major source of risk for autism.

    Publication
  30. De novo mutations revealed by whole-exome sequencing are strongly associated with autism.

    Publication
  31. Multiple recurrent de novo CNVs, including duplications of the 7q11.23 Williams syndrome region, are strongly associated with autism.

    Publication

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