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  • Founded by Jim and Marilyn Simons, we’re a private philanthropy advancing mathematics and basic science.

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Bringing people and ideas together to fund, conduct, and share transformative science.

Our grants advance knowledge and strengthen connections between science and society.

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We convene scientists, mathematicians, and thinkers to share ideas and explore new questions.

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Founded by Jim and Marilyn Simons, we’re a private philanthropy advancing mathematics and basic science.

Work with us on the frontier of basic science research.

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The Flatiron Institute is a research center that uses computational science to advance fields like physics, biology, and astronomy.

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Featured

Dissecting mechanisms of hyperarousal in autism and related disorders using the Simons Sleep Project

Funded Work

Gravity Follows Newton’s and Einstein’s Rules, Even at Cosmic Scales

April 15, 2026

Scientists Capture Superconductivity’s ‘Dancing Pairs’ for First Time, Filling Gap in Decades-Old Theory

April 15, 2026

How SURFiN Fellowships Jump-Started These 3 Neuroscience Students’ STEM Careers

March 18, 2026

Results

  1. Behavioral origin of sound-evoked activity in mouse visual cortex

    Publication
  2. Refinements to rodent head fixation and fluid/food control for neuroscience

    Publication
  3. Visuomotor learning promotes visually evoked activity in the medial prefrontal cortex

    Publication
  4. Refinements to rodent head fixation and fluid/food control for neuroscience

    Publication
    The use of head fixation in mice is increasingly common in research, its use having initially been restricted to the field of sensory neuroscience. Head restraint has often …
  5. Task specificity in mouse parietal cortex

    Publication
    Parietal cortex is implicated in a variety of behavioral processes, but it is unknown whether and how its individual neurons participate in multiple tasks. We trained head-fixed …
  6. A transcriptomic axis predicts state modulation of cortical interneurons

    Publication
    Transcriptomics has revealed that cortical inhibitory neurons exhibit a great diversity of fine molecular subtypes1-6, but it is not known whether these subtypes have correspondingly diverse patterns …
  7. Sensory coding and the causal impact of mouse cortex in a visual decision

    Publication
    Correlates of sensory stimuli and motor actions are found in multiple cortical areas, but such correlates do not indicate whether these areas are causally relevant to task performance …
  8. Dopamine axons in dorsal striatum encode contralateral visual stimuli and choices

    Publication
    The striatum plays critical roles in visually-guided decision making and receives dense axonal projections from midbrain dopamine neurons. However, the roles of striatal dopamine in visual decision …
  9. Neuropixels 2.0: A miniaturized high-density probe for stable, long-term brain recordings

    Publication
    Measuring the dynamics of neural processing across time scales requires following the spiking of thousands of individual neurons over milliseconds and months. To address this need, we introduce …
  10. Spatial modulation of visual responses arises in cortex with active navigation

    Publication
    During navigation, the visual responses of neurons in mouse primary visual cortex (V1) are modulated by the animal's spatial position. Here we show that this spatial modulation …
  11. Striatal activity topographically reflects cortical activity

    Publication
    The cortex projects to the dorsal striatum topographically1,2 to regulate behaviour3-5, but spiking activity in the two structures has previously been reported to have markedly different …
  12. Spatial connectivity matches direction selectivity in visual cortex

    Publication
    The selectivity of neuronal responses arises from the architecture of excitatory and inhibitory connections. In the primary visual cortex, the selectivity of a neuron in layer 2/3 …
  13. Mouse Visual Cortex Is Modulated by Distance Traveled and by Theta Oscillations

    Publication
    The visual responses of neurons in the primary visual cortex (V1) are influenced by the animal's position in the environment [1-5]. V1 responses encode positions that …
  14. Rigbox: An Open-Source Toolbox for Probing Neurons and Behavior

    Publication
    Setting up an experiment in behavioral neuroscience is a complex process that is often managed with ad hoc solutions. To streamline this process, we developed Rigbox, a high …
  15. Arousal Modulates Retinal Output

    Publication
    At various stages of the visual system, visual responses are modulated by arousal. Here, we find that in mice this modulation operates as early as in the first …
  16. Distributed coding of choice, action and engagement across the mouse brain

    Publication
    Vision, choice, action and behavioural engagement arise from neuronal activity that may be distributed across brain regions. Here we delineate the spatial distribution of neurons underlying these processes …
  17. The impact of bilateral ongoing activity on evoked responses in mouse cortex.

    Publication
    In the absence of external stimuli or overt behavior, the activity of the left and right cortical hemispheres shows fluctuations that are largely bilateral. Here, we show that …
  18. The impact of bilateral ongoing activity on evoked responses in mouse cortex

    Publication
    In the absence of external stimuli or overt behavior, the activity of the left and right cortical hemispheres shows fluctuations that are largely bilateral. Here, we show that …
  19. Spontaneous behaviors drive multidimensional, brainwide activity.

    Publication
    Neuronal populations in sensory cortex produce variable responses to sensory stimuli and exhibit intricate spontaneous activity even without external sensory input. Cortical variability and spontaneous activity have been …
  20. Dopaminergic and Prefrontal Basis of Learning from Sensory Confidence and Reward Value.

    Publication
    Deciding between stimuli requires combining their learned value with one's sensory confidence. We trained mice in a visual task that probes this combination. Mouse choices reflected not …
  21. Decision and navigation in mouse parietal cortex.

    Publication
    Posterior parietal cortex (PPC) has been implicated in navigation, in the control of movement, and in visually-guided decisions. To relate these views, we measured activity in PPC …
  22. Coherent encoding of subjective spatial position in visual cortex and hippocampus.

    Publication
    A major role of vision is to guide navigation, and navigation is strongly driven by vision1-4. Indeed, the brain's visual and navigational systems are known to …
  23. Vision and Locomotion Shape the Interactions between Neuron Types in Mouse Visual Cortex.

    Publication
    Cortical computation arises from the interaction of multiple neuronal types, including pyramidal (Pyr) cells and interneurons expressing Sst, Vip, or Pvalb. To study the circuit underlying such interactions …
  24. Effects of Arousal on Mouse Sensory Cortex Depend on Modality.

    Publication
    Changes in arousal modulate the activity of mouse sensory cortex, but studies in different mice and different sensory areas disagree on whether this modulation enhances or suppresses activity …
  25. Challenges and opportunities for large-scale electrophysiology with Neuropixels probes.

    Publication
    Electrophysiological methods are the gold standard in neuroscience because they reveal the activity of individual neurons at high temporal resolution and in arbitrary brain locations. Microelectrode arrays based …
  26. Fully integrated silicon probes for high-density recording of neural activity.

    Publication
    Sensory, motor and cognitive operations involve the coordinated action of large neuronal populations across multiple brain regions in both superficial and deep structures. Existing extracellular probes record neural …
  27. Aberrant Cortical Activity in Multiple GCaMP6-Expressing Transgenic Mouse Lines.

    Publication
    Transgenic mouse lines are invaluable tools for neuroscience but, as with any technique, care must be taken to ensure that the tool itself does not unduly affect the …
  28. High-Yield Methods for Accurate Two-Alternative Visual Psychophysics in Head-Fixed Mice.

    Publication
    Research in neuroscience increasingly relies on the mouse, a mammalian species that affords unparalleled genetic tractability and brain atlases. Here, we introduce high-yield methods for probing mouse …
  29. Subcortical Source and Modulation of the Narrowband Gamma Oscillation in Mouse Visual Cortex

    Publication
    Primary visual cortex exhibits two types of gamma rhythm: broadband activity in the 30-90 Hz range and a narrowband oscillation seen in mice at frequencies close to …

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