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  1. Comparing cryo-EM methods and molecular dynamics simulation to investigate heterogeneity in ligand-bound TRPV1

    Publication
    Cryogenic electron microscopy (cryo-EM) has emerged as a powerful method for resolving the structure of biological macromolecules. Recently, several computational methods have been developed to study the …

  2. Comparing cryo-EM methods and molecular dynamics simulation to investigate heterogeneity in ligand-bound TRPV1

    Publication
    Cryogenic electron microscopy (cryo-EM) has emerged as a powerful method for resolving the structure of biological macromolecules. Recently, several computational methods have been developed to study the …

  3. The ManifoldEM method for cryo-EM: a step-by-step breakdown accompanied by a modern Python implementation

    Publication
    Resolving continuous conformational heterogeneity in single-particle cryo-electron microscopy (cryo-EM) is a field in which new methods are now emerging regularly. Methods range from traditional statistical …

  4. The ManifoldEM method for cryo-EM: a step-by-step breakdown accompanied by a modern Python implementation

    Publication
    Resolving continuous conformational heterogeneity in single-particle cryo-electron microscopy (cryo-EM) is a field in which new methods are now emerging regularly. Methods range from traditional statistical …

  5. Heterogeneity in ligand-bound TRPV1: A comparison of methods in cryo-EM and molecular dynamics simulation

    Publication
    Cryogenic electron microscopy (cryo-EM) has emerged as a powerful method for resolving the atomistic details of cellular components. In recent years, several computational methods have been developed …

  6. Self-organized intracellular twisters

    Publication
    Life in complex systems, such as cities and organisms, comes to a standstill when global coordination of mass, energy and information flows is disrupted. Global coordination is no …

  7. Protein Structural Alignments From Sequence

    Publication
    Computing sequence similarity is a fundamental task in biology, with alignment forming the basis for the annotation of genes and genomes and providing the core data structures for …

  8. Kernel Aggregated Fast Multipole Method: Efficient summation of Laplace and Stokes kernel functions

    Publication
    Many different simulation methods for Stokes flow problems involve a common computationally intense task—the summation of a kernel function over O(N2) pairs of points. One popular …