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Simons Foundation
Simons Foundation

Autism Research Initiative (SFARI)

  • Funding

    Explore open funding opportunities for autism research.

    Funding Opportunities

    Early Career Awards

    • Fellows to Faculty Award
    • Shenoy Undergraduate Research Fellowship in Neuroscience (SURFiN)

    Investigator Awards

    • New Ideas

    Symposia & Travel Awards

    • Conferences & Courses Award

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    • Pivot Fellowship
    • Simons Society of Fellows

    Resource for Applying

    • Open Funding Opportunities
    • Policies & Procedures
    • Instructional Videos
    • Past Funded Work
  • Supported Work

    SFARI has supported over 750 investigators studying autism-related research.

    Research Highlights

    Research

    • SFARI Investigators
    • Funded Projects
    • Publications

    Data Access & Tools

    • SFARI Base
    • SFARI Gene
    • SFARI Genomes Browser

    Centers & Initiatives

    • Simons Center for the Social Brain
    • Simons Initiative for the Developing Brain

    Collaborations & Consortia

    • SFARI Sex Differences
    • Autism Rat Models Consortium
  • Resources

    Access data, biospecimens and participant cohorts through SFARI Base.

    SFARI Base

    Cohorts & Tissue Banks

    • SPARK
    • Simons Searchlight
    • Simons Simplex Collection
    • Autism BrainNet
    • Autism Inpatient Collection

    Other Resources

    • Animal Models
    • Biospecimens
    • Research Match

    Data Access & Tools

    • SFARI Base
    • SFARI Gene
    • SFARI Genomes Browser
    • Genotypes & Phenotypes in Families
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    SFARI’s mission is to advance the basic science of autism and related neurodevelopmental disorders.

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Autism Research Initiative (SFARI) Autism Rat Models Consortium

Autism Rat Models Consortium: Publications

From ARC

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  1. Interval timing is altered in male Nrxn1+/- mice: A model of autism spectrum disorder.

    Autism Res., March 20, 2026

    Roddick K.M., Habib E.B., Brown R.E., and Balci F.

  2. Temporal and cell-specific regulation of synaptic homeostasis by the chromatin remodeler Chd1.

    Adv. Sci. (Weinh.), March 15, 2026

    Morency D.T., Cui T., Cai Y., Lok C., Nokku R.E., Huang R., et al.

  3. Increasing power in language genetics with Lingo: A web-based digital phenotyping platform.

    medRxiv, February 23, 2026

    Casten L.G., Koomar T., Elsadany M., Hsu Y., Kelly E., Snyder G., et al.

  4. The choice-wide behavioral association study: Data-driven identification of interpretable behavioral components.

    medRxiv, February 5, 2026

    D. Kastner, Yokota Y.O., Lee C.Y., Holobetz C., Chaudhry A., Williams G., et al.

  5. Delayed milestones and demographic factors relate to the accuracy of autism screening in females using spoken language.

    J. Autism Dev. Disord., February 3, 2026

    Kniola A., Ludwig N.N., Singh V., Bradley C., L. Carpenter, Dillon E.F., et al.

  6. Single-cell proteomic landscape of the developing human brain.

    Nat. Biotechnol., January 27, 2026

    Wu T., Jiang L., Mukhtar T., Wang L., Jian R., Wang C., et al.

  7. Evaluating Computerised Assessment of Motor Imitation (CAMI) for identifying autism-specific difficulties not observed for attention-deficit hyperactivity disorder or neurotypical development.

    Br. J. Psychiatry, January 2, 2026

    Santra R., Pacheco C., Crocetti D., Vidal R., S. Mostofsky, and Tunçgenç B.

  8. Sex differences and parent-teacher discrepancies in reports of autism traits: Evidence for camouflaging in a school setting.

    J. Autism Dev. Disord., November 3, 2025

    Putnam O.C., McFayden T.C., and Harrop C.

  9. Autistic characteristics, cognitive impairment, and sex as predictors of anxiety and depression among autistic youth.

    J. Autism Dev. Disord., November 3, 2025

    Long E.F., Johnson M.F., and L. Carpenter

  10. Transcriptomic convergence and the female protective effect in autism.

    bioRxiv, October 8, 2025

    Andersen R.E., Talukdar M., Sakamoto T., Exposito-Alonso D., Song J.H.T., Qian X., et al.

  11. MED13L-related disorder characterized by severe motor speech impairment.

    J. Neurodev. Disord., September 24, 2025

    Mitchel M.W., Turner S., Walsh L.K., Torene R.I., Myers S.M., and Taylor C.M.

  12. Cortical versus hippocampal network dysfunction in a human brain assembloid model of epilepsy and intellectual disability.

    Cell Rep., September 23, 2025

    McCrimmon C.M., Toker D., Pahos M., Cao Q., Lozano K., Lin J.J., et al.

  13. Tunable, proteolytic dosage control of CRISPR-Cas systems enables precise gene therapy for dosage sensitive disorders.

    bioRxiv, September 19, 2025

    Katz N., An C., Lee Y.-J., Tycko J., Zheng M., Kang J., et al.

  14. Human-specific gene expansions contribute to brain evolution.

    Cell, September 18, 2025

    Soto D.C., Uribe-Salazar J.M., Kaya G., Valdarrago R., Sekar A., Haghani N.K., et al.

  15. CRISPR activation for SCN2A-related neurodevelopmental disorders.

    Nature, September 17, 2025

    Tamura S., Nelson A.D., Spratt P.W.E., Hamada E.C., Zhou X., Kyoung H., et al.

  16. The neural bases of language processing during social and non-social contexts: A fNIRS study of autistic and neurotypical preschool-aged children.

    Mol. Autism., August 6, 2025

    Pecukonis M., Gerson J., Gustafson-Alm H., Wood M., Yücel M., Boas D.A., et al.

  17. Multimodal analyses reveal genes driving electrophysiological maturation of neurons in the primate prefrontal cortex.

    Neuron, August 1, 2025

    Gao Y., Dong Q., Arachchilage K.H., Risgaard R.D., Syed M., Sheng J., et al.

  18. Prematurity and genetic liability for autism spectrum disorder.

    medRxiv, July 24, 2025

    Zhang Y., Yahia A., S. Sandin, and Tammimies K.

  19. Polygenic and developmental profiles of autism differ by age at diagnosis.

    medRxiv, July 17, 2025

    Zhang X., Grove J., Gu Y., Buus C.K., Nielsen L.K., Neufeld S.A.S., et al.

  20. Early developmental origins of cortical disorders modeled in human neural stem cells.

    Nat. Commun., July 9, 2025

    Mato-Blanco X., Kim S.-K., Jourdon A., Ma S., Choi S.-H., Giani A.M., et al.

  21. Decomposition of phenotypic heterogeneity in autism reveals distinct and coherent genetic programs.

    Nat Genet., July 9, 2025

    Litman A., Sauerwald N., Green Snyder L., Park C.Y., Hao Y., Dinstein I., et al.

  22. Single-cell analysis of dup15q syndrome reveals developmental and postnatal molecular changes in autism.

    Nat. Commun., July 4, 2025

    Perez Y., Velmeshev D., Wang L., White M.L., Siebert C., Baltazar J., et al.

  23. Human-specific gene expansions contribute to brain evolution.

    bioRxiv, June 25, 2025

    Soto D.C., Uribe-Salazar J.M., Kaya G., Valdarrago R., Sekar A., Haghani N.K., et al.

  24. Cholinergic modulation of dopamine release drives effortful behavior.

    bioRxiv, June 21, 2025

    Touponse G.C., Pomrenze M.B., Yassine T., Mehta V., Denomme N., Zhang Z., et al.

  25. Estimation of direct and indirect polygenic effects and gene-environment interactions using polygenic scores in case-parent trio studies.

    medRxiv, June 17, 2025

    Wang Z., Grosvenor L., Ray D., Cheng T., Ruczinski I., Beaty T.H., et al.

  26. Analysis of variant interactions in families with autism points to genes involved in the development of the central nervous system.

    PLoS One, June 11, 2025

    Kaczyński J. and Pasenkiewicz-Gierula M.

  27. Noncoding de novo mutations in SCN2A are associated with autism spectrum disorders.

    medRxiv, May 29, 2025

    Zhang Y., Ahsan M.U., and Wang K.

  28. m6A-mRNA reader YTHDF2 identified as a potential risk gene in autism with disproportionate megalencephaly.

    Autism Res., May 1, 2025

    Nishizaki S.S., Haghani N.K., La G.N., Mariano N.A.F., Uribe-Salazar J.M., Kaya G., et al.

  29. Quantifying neurobehavioral profiles across neurodevelopmental genetic syndromes and idiopathic neurodevelopmental disorders.

    Dev. Med. Child Neurol., May 1, 2025

    T. Frazier, Busch R.M., Klaas P., Lachlan K., E. Loth, Smith-Hicks C., et al.

  30. Mapping the landscape of social behavior.

    Cell, April 17, 2025

    U. Kilbaite, Li T., Aldarondo D., Akoad J.F., B. Ölveczky, and Dunn T.W.

  31. Cell-type-specific roles of FOXP1 in the excitatory neuronal lineage during early neocortical murine development.

    Cell Rep., March 25, 2025

    Ortiz A., Ayhan F., Khandelwal N., Outland E., Jankovic M., Harper M., et al.

  32. SINEUP RNA rescues molecular phenotypes associated with CHD8 suppression in autism spectrum disorder model systems

    Mol. Ther., March 5, 2025

    Di Leva F., Arnoldi M., Santarelli S., Massonot M., Lemée M.V., Bon C., et al.

  33. Reports of echolalia and related behaviors in autism from parents, teachers, and clinicians: Evidence from the Simon Simplex Collection.

    Autism Res., March 3, 2025

    McAllister M.L., McFayden T., and Harrop C.

  34. The Relationships, Employment, Autonomy, and Life Satisfaction (REALS) measures for autistic adults and adults with other intellectual and developmental disabilities: Psychometric testing of the self-report and proxy versions.

    Autism Res., March 1, 2025

    Conner C.M., Yu L., MacKenzie K.T., Zeglen K.N., Rutenberg E.L., Pilkonis P.A., et al.

  35. Cell type-specific roles of FOXP1 in the excitatory neuronal lineage during early neocortical murine development.

    bioRxiv, February 20, 2025

    Ortiz A., Ayhan F., Khandelwal N., Outland E., Jankovic M., Harper M., et al.

  36. Paving the way toward treatment solutions for CTNNB1 syndrome: A patient organization perspective.

    Ther. Adv. Rare. Dis., February 12, 2025

    Miroševič Š, Khandelwal S., Amerson E., Parks E., Parks M., Cochran L., González-Hernández A., Ferraro M., Lisowski L., Perez-Iturralde A., Chung W., Jacob M.H., Žakelj N., Lainšček D., Forstnerič V., Sušjan P., Maruna M., Jerala R., Osredkar D.

  37. Comparison of autism domains across thirty rare variant genotypes.

    EBioMedicine, February 3, 2025

    Ali N.M.H., Chawner S.J.R.A., Kushan-Wells L., C. Bearden, Mulle J.G., Pollak R.M., et al.

  38. Remote monitoring of social attention in neurogenetic syndromes and idiopathic neurodevelopmental disability.

    Autism Res., February 3, 2025

    T. Frazier, Busch R.M., Klaas P., Lachlan K., S. Jeste, A. Kolevzon, et al.

  39. De novo missense variants in the PP2A regulatory subunit PPP2R2B in a neurodevelopmental syndrome: Potential links to mitochondrial dynamics and spinocerebellar ataxias.

    Hum. Mol. Genet., January 29, 2025

    Sandal P., Jong C.J., Merrill R.A., Kollman G.J., Paden A.H., Bend E.G., Sullivan J., Spillmann R.C., Shashi V., Vulto-van Silfhout A.T., Pfundt R., de Vries B.B.A., Li P.P., Bicknell L.S. and S. Strack

  40. Rare variant analyses in ancestrally diverse cohorts reveal novel ADHD risk genes.

    medRxiv, January 17, 2025

    Jung S., Caballero M., Olfson E., Newcorn J.H., T. Fernandez, and Mahjani B.

  41. Molecular and cellular dynamics of the developing human neocortex at single-cell resolution.

    Nature, January 8, 2025

    Wang L., Wang C., Moriano J.A., Chen S., Zuo G., Cebrián-Silla A., et al.

  42. Deleterious coding variation associated with autism is consistent across populations, as exemplified by admixed Latin American populations.

    medRxiv, January 6, 2025

    Avila M.N., Jung S., Satterstrom F.K., Fu J.M., Levy T., Sloofman L.G., Klei L., Pichardo T., Stevens C.R., Cusick C.M., Ames J.L., Campos G.S., Cerros H., Chaskel R., Costa C.I.S., Cuccaro M.L., Del Pilar Lopez A., Fernandez M., Ferro E., Galeano L., Girardi A.C.D.E.S., Griswold A.J., Hernandez L.C., Lourenço N., Ludena Y., Nuñez D.L., Oyama R., Peña K.P., Pessah I., Schmidt R., Sweeney H.M., Tolentino L., Wang J.Y.T., Albores-Gallo L., Croen L.A., Cruz-Fuentes C.S., Hertz-Picciotto I., A. Kolevzon, Lattig M.C., Mayo L., Passos-Bueno M.R., Pericak-Vance M.A., Siper P.M., Tassone F., Trelles M.P., Autism Sequencing Consortium, M. Talkowski, M. Daly, Mahjani B., De Rubeis S., et al.

  43. Relationship between service receipt during the COVID-19 pandemic and autistic children's multisystem outcomes and autism severity: A SPARK dataset analysis.

    Autism Res., January 2, 2025

    Tsai J.-M. and Bhat A.

  44. Children's social preference for teachers versus peers in autism inclusion classrooms: An objective perspective.

    Autism Res., January 2, 2025

    Drye M., Banarjee C., Perry L., Viggiano A., Irvin D., and Messinger D.

  45. Demographic factors relate to autism diagnostic certainty: Implications for enhancing equitable diagnosis among youth.

    J. Clin. Child Adolesc. Psychol., January 2, 2025

    McDonnell C.G., Andrzejewski T., Gomez Batista S., DeLucia E.A., Fok M., and Stanton K.

  46. Impact of receiving genetic diagnoses on parents' perceptions of their children with autism and intellectual disability.

    J. Autism Dev. Disord., January 2, 2025

    Klitzman R., Bezborodko E., Chung W.K., and Appelbaum P.

  47. Genetic variants in DDX53 contribute to autism spectrum disorder associated with the Xp22.11 locus.

    Am. J. Hum. Genet., January 2, 2025

    Scala M., Bradley C.A., Howe J.L., Trost B., Salazar N.B., Shum C., et al.

  48. Chromosome X-wide common variant association study in autism spectrum disorder.

    Am. J. Hum. Genet., January 2, 2025

    Mendes M., Chen D.Z., Engchuan W., Leal T.P., Thiruvahindrapuram B., Trost B., et al.

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