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Simons Foundation
Simons Foundation

Autism Research Initiative (SFARI)

  • Funding

    Explore open funding opportunities for autism research.

    Funding Opportunities

    Early Career Awards

    • Fellows to Faculty Award
    • Shenoy Undergraduate Research Fellowship in Neuroscience (SURFiN)

    Investigator Awards

    • New Ideas

    Symposia & Travel Awards

    • Conferences & Courses Award

    Shared Programs

    • Pivot Fellowship
    • Simons Society of Fellows

    Resource for Applying

    • Open Funding Opportunities
    • Policies & Procedures
    • Instructional Videos
    • Past Funded Work
  • Supported Work

    SFARI has supported over 750 investigators studying autism-related research.

    Research Highlights

    Research

    • SFARI Investigators
    • Funded Projects
    • Publications

    Data Access & Tools

    • SFARI Base
    • SFARI Gene

    Centers & Initiatives

    • Simons Center for the Social Brain
    • Simons Initiative for the Developing Brain

    Collaborations & Consortia

    • SFARI Sex Differences
    • Autism Rat Models Consortium
  • Resources

    Access data, biospecimens and participant cohorts through SFARI Base.

    SFARI Base

    Cohorts & Tissue Banks

    • SPARK
    • Simons Searchlight
    • Simons Simplex Collection
    • Autism BrainNet
    • Autism Inpatient Collection

    Other Resources

    • Animal Models
    • Biospecimens
    • Research Match

    Data Access & Tools

    • SFARI Base
    • SFARI Gene
    • SFARI Genomes Browser
    • Genotypes & Phenotypes in Families
  • News

    See the latest news and updates from SFARI.

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    SFARI’s mission is to advance the basic science of autism and related neurodevelopmental disorders.

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Autism Research Initiative (SFARI) Autism Rat Models Consortium

Autism Rat Models Consortium: Publications

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  1. Sentinel interaction mapping — a generic approach for the functional analysis of human disease gene variants using yeast.

    Dis. Model. Mech., July 6, 2021

    Young B.P., Post K.L., Chao J.T., Meili F., K. Haas, and C. Loewen

  2. Autism-associated biomarkers: Test–retest reliability and relationship to quantitative social trait variation in rhesus monkeys.

    Mol. Autism, July 6, 2021

    Oztan O., Talbot C.F., Argilli E., Maness A.C., Simmons S.M., Mohsin N., et al.

  3. Maternal steroid levels and the autistic traits of the mother and infant.

    Mol. Autism, July 6, 2021

    Tsompanidis A., Aydin E., Padaigaitė E., Richards G., Allison C., Hackett G., et al.

  4. Atypical gaze patterns in autism are heterogeneous across subjects but reliable within individuals.

    bioRxiv, July 2, 2021

    Keles U., Kliemann D., Byrge L., Saarimäki H., Paul L.K., and Kennedy D.P.

  5. Autism-linked Cullin3 germline haploinsufficiency impacts cytoskeletal dynamics and cortical neurogenesis through RhoA signaling.

    Mol. Psychiatry, June 30, 2021

    Amar M., Pramod A.B., Yu N.-K., Herrera V.M., Qiu L.R., Moran-Losada P., et al.

  6. Innate immunity at the crossroads of healthy brain maturation and neurodevelopmental disorders.

    Nat. Rev. Immunol., June 30, 2021

    Zengeler K.E. and J. Lukens

  7. Cell-type-specific synaptic imbalance and disrupted homeostatic plasticity in cortical circuits of ASD-associated Chd8 haploinsufficient mice

    Mol. Psychiatry, June 30, 2021

    Ellingford R.A., Panasiuk M.J., de Meritens E.R., Shaunak R., Naybour L., Browne L., et al.

  8. Modulation of striatal functional connectivity differences in adults with and without autism spectrum disorder in a single-dose randomized trial of cannabidivarin.

    Mol. Autism, June 29, 2021

    Pretzsch C.M., Floris D.L., Voinescu B., Elsahib M., Mendez M.A., Wichers R., et al.

  9. Closing the species gap: Translational approaches to studying sensory processing differences relevant for autism spectrum disorder.

    Autism Res., June 29, 2021

    Scott K.E., Schulz S.E., Moehrle D., Allman B.L., Cardy J.E.O., Stevenson R.A., et al.

  10. Autism symptoms in anorexia nervosa: A comparative study with females with autism spectrum disorder.

    Mol. Autism, June 28, 2021

    Kerr-Gaffney J., Hayward H., E. Jones, J. Valdivia Espino, Halls D., and D. Murphy

  11. Novel epigenetic clock for fetal brain development predicts prenatal age for cellular stem cell models and derived neurons.

    Mol. Brain, June 24, 2021

    Steg L.C., Shireby G.L., Imm J., Davies J.P., Franklin A., Flynn R., et al.

  12. Identifying developing interneurons as a potential target for multiple genetic autism risk factors in human and rodent forebrain.

    bioRxiv, June 21, 2021

    Yang Y., Booker S.A., Clegg J.M., Urzainqui I.Q., Sumera A., Kozic Z., et al.

  13. Estimating genetic nurture with summary statistics of multi-generational genome-wide association studies.

    Proc. Natl. Acad. Sci. U S A, June 21, 2021

    Wu Y., Zhong X., Lin Y., Zhao Z., Chen J., Zheng B., et al.

  14. Reflections on the genetics-first approach to advancements in molecular genetic and neurobiological research on neurodevelopmental disorders.

    J. Neurodev. Disord., June 19, 2021

    Arnett A.B., Wang T., E. Eichler, and R. Bernier

  15. Computational neuroimaging of cognition-emotion interactions: Affective and task-similar interference differentially impact working memory.

    bioRxiv, June 14, 2021

    Ji J.L., Repovs G., Yang G.J., Savic A., J. Murray, and A. Anticevic

  16. Diminished cortical excitation and elevated inhibition during perceptual impairments in a mouse model of autism.

    Cereb. Cortex, June 9, 2021

    Del Rosario J., Speed A., Arrowood H., Motz C., Pardue M., and B. Haider

  17. Genetic and morphological estimates of androgen exposure predict social deficits in multiple neurodevelopmental disorder cohorts.

    Mol. Autism, June 8, 2021

    McKenna B.G., Huang Y., Vervier K., Hofammann D., Cafferata M., Al-Momani S., et al.

  18. Estimating the prevalence and genetic risk mechanisms of ARFID in a large autism cohort.

    Front. Psychiatry, June 7, 2021

    Koomar T., Thomas T.R., Pottschmidt N.R., Lutter M., and J. Michaelson

  19. Neural basis of opioid-induced respiratory depression and its rescue.

    Proc. Natl. Acad. Sci. U S A, June 7, 2021

    Liu S., Kim D., Oh T.G., Pao G., Kim J.-H., Palmiter R.D., et al.

  20. The ciliary gene INPP5E confers dorsal telencephalic identity to human cortical organoids by negatively regulating sonic hedgehog signalling.

    bioRxiv, June 6, 2021

    Schembs L., Willems A., Hasenpusch-Theil K., Cooper J.D., Whiting K., Burr K., et al.

  21. The tectum/superior colliculus as the vertebrate solution for spatial sensory integration and action.

    Curr. Biol., June 5, 2021

    Isa T., Marquez-Legorreta E., Grillner S., and E. Scott

  22. Genetic subtypes, allelic effects, and convergent neurodevelopmental mechanisms.

    Genome Med., June 5, 2021

    Das M. and S. Girirajan

  23. Psychometric validation and refinement of the Interoception Sensory Questionnaire (ISQ) in adolescents and adults on the autism spectrum.

    Mol. Autism, June 5, 2021

    Suzman E., Williams Z.J., Feldman J.I., Failla M., Cascio C.J., M. Wallace, et al.

  24. The CHD8 CHD7/Kismet family links blood-brain barrier glia and serotonin to ASD-associated sleep defects

    Sci. Adv., June 4, 2021

    Coll-Tané M., Gong N.N., Belfer S.J., van Renssen L.V., Kurtz-Nelson E.C., Szuperak M., Eidhof I., van Reijmersdal B., Terwindt I., Durkin J., Verheij M.M.M., Kim C.N., Hudac C.M., T. Nowakowski, R. Bernier, Pillen S., Earl R.K., E. Eichler, Kleefstra T., Kayser M.S., et al.

  25. Truncating SRCAP variants outside the Floating-Harbor syndrome locus cause a distinct neurodevelopmental disorder with a specific DNA methylation signature.

    Am. J. Hum. Genet., June 3, 2021

    Rots D., Chater-Diehl E., Dingemans A.J.M., Goodman S.J., Siu M.T., Cytrynbaum C., Choufani S., Hoang N., Walker S., Awamleh Z., Charkow J., Meyn S., Pfundt R., Rinne T., Gardeitchik T., de Vries B.B.A., Deden A.C., Leenders E., Kwint M., Stumpel C.T.R.M., Stevens S.J.C., Vermeulen J.R., van Harssel J.V.T., Bosch D.G.M., van Gassen K.L.I., van Binsbergen E., de Geus C.M., Brackel H., Hempel M., Lessel D., Denecke J., Slavotinek A., Strober J., Crunk A., Folk L., Wentzensen I.M., Yang H., Zou F., Millan F., Person R., Xie Y., Liu S., Ousager L.B., Larsen M., Schultz-Rogers L., Morava E., Klee E.W., Berry I.R., Campbell J., Lindstrom K., Pruniski B., Neumeyer A.M., Radley J.A., Phornphutkul C., Schmidt B., Wilson W.G., Õunap K., Reinson K., Pajusalu S., van Haeringen A., Ruivenkamp C., Cuperus R., Santos-Simarro F., Palomares-Bralo M., Pacio-Míguez M., Ritter A., Bhoj E., Tønne E., Tveten K., Cappuccio G., Brunetti-Pierri N., Rowe L., Bunn J., Saenz M., Platzer K., Mertens M., Caluseriu O., Nowaczyk M.J.M., Cohn R.D., Kannu P., Alkhunaizi E., Chitayat D., S. Scherer, Brunner H.G., Vissers L.E.L.M., Kleefstra T., Koolen D.A., and R. Weksberg

  26. 16p11.2 deletion syndrome.

    Curr. Opin. Genet. Dev., June 1, 2021

    Chung W.K., T. Roberts, E. Sherr, Green Snyder L., and Spiro J.E.

  27. Patterns and correlates of two-year changes in depressive symptoms for autistic adults.

    J. Am. Acad. Child Adolesc. Psychiatry, June 1, 2021

    Zheng S., Kaat A., Farmer C., S. Kanne, Georgiades S., C. Lord, et al.

  28. Structural and functional brain alterations revealed by neuroimaging in CNV carriers.

    Curr. Opin. Genet. Dev., June 1, 2021

    Moreau C.A., Ching C.R., Kumar K., Jacquemont S., and C. Bearden

  29. Prevalence of returnable genetic results based on recognizable phenotypes among children with autism spectrum disorder.

    medRxiv, June 1, 2021

    S. Bishop, Thurm A., E. Robinson, and S. Sanders

  30. CNVxplorer: A web tool to assist clinical interpretation of CNVs in rare disease patients.

    Nucleic Acids Res., June 1, 2021

    Requena F., Abdallah H.H., García A., Nitschké P., Romana S., Malan V., et al.

  31. Sex-specific stress-related behavioral phenotypes and central amygdala dysfunction in a mouse model of 16p11.2 microdeletion.

    Biol. Psychiatry Glob. Open Sci., June 1, 2021

    Giovanniello J., Ahrens S., Yu K., and B. Li

  32. FOXP1 negatively regulates intrinsic excitability in D2 striatal projection neurons by promoting inwardly rectifying and leak potassium currents.

    Mol. Psychiatry, June 1, 2021

    Khandelwal N., Cavalier S., Rybalchenko V., Kulkarni A., Anderson A.G., G. Konopka, et al.

  33. Robust and replicable measurement for prepulse inhibition of the acoustic startle response.

    Mol. Psychiatry, June 1, 2021

    Miller E.A., D. Kastner, Grzybowski M.N., Dwinell M.R., and Geurts A.M.

  34. Genome-wide analysis of gene dosage in 24,092 individuals estimates that 10,000 genes modulate cognitive ability.

    Mol. Psychiatry, May 31, 2021

    Huguet G., Schramm C., Douard E., Tamer P., Main A., Monin P., et al.

  35. Disruption of RFX family transcription factors causes autism, attention-deficit/hyperactivity disorder, intellectual disability, and dysregulated behavior.

    Genet. Med., May 31, 2021

    Harris H.K., Nakayama T., Lai J., Zhao B., Argyrou N., Gubbels C.S., et al.

  36. Resting and functional pupil response metrics indicate features of reward sensitivity and ASD in children.

    J. Autism. Dev. Disord., May 31, 2021

    DiCriscio A.S. and V. Troiani

  37. Adaptive behavior profiles of intellectually gifted children with autism spectrum disorder.

    J. Dev. Behav. Pediatr., May 30, 2021

    Dempsey J., Ahmed K., Simon A.R., Hayutin L.G., Monteiro S., and Dempsey A.G.

  38. Brain gene co-expression networks link complement signaling with convergent synaptic pathology in schizophrenia.

    Nat. Neurosci., May 30, 2021

    Kim M., Haney J.R., Zhang P., Hernandez L.M., Wang L.-K., Perez-Cano L., et al.

  39. A large-scale investigation into the role of classical HLA loci in multiple types of severe infections, with a focus on overlaps with autoimmune and mental disorders.

    J. Transl. Med., May 29, 2021

    Nudel R., Allesøe R.L., Thompson W.K., Werge T., Rasmussen S., and Benros M.E.

  40. Differences in social brain function in autism spectrum disorder are linked to the serotonin transporter.

    bioRxiv, May 28, 2021

    Wong N.M.L., Dipasquale O., Turkheimer F., Findon J.L., Wichers R.H., Dimitrov M., et al.

  41. Using the big data approach to clarify the structure of restricted and repetitive behaviors across the most commonly used autism spectrum disorder measures.

    Mol. Autism, May 25, 2021

    Uljarević M., Jo B., T. Frazier, Scahill L., Youngstrom E.A., and A. Hardan

  42. Atlas of functional connectivity relationships across rare and common genetic variants, traits, and psychiatric conditions.

    medRxiv, May 25, 2021

    Moreau C.A., Kumar K., Harvey A., Huguet G., Urchs S., Douard E.A., et al.

  43. Relationship between social motivation in children with autism spectrum disorder and their parents.

    Front. Neurosci., May 24, 2021

    Uljarević M., T. Frazier, Jo B., Phillips J.M., Billingham W., Cooper M.N., et al.

  44. Chromatin remodeler Arid1a regulates subplate neuron identity and wiring of cortical connectivity.

    Proc. Natl. Acad. Sci. U S A, May 23, 2021

    Doyle D.Z., Lam M.M., Qalieh A., Qalieh Y., Sorel A., Funk O.H., et al.

  45. Association of CDH11 with ASD revealed by matched-gene co-expression analysis and mouse behavioral studies.

    bioRxiv, May 23, 2021

    Wu N., Wang Y., Jia J.-Y., Pan Y.-H., and X. Yuan

  46. Altered maturation and atypical cortical processing of spoken sentences in autism spectrum disorder.

    Prog. Neurobiol., May 20, 2021

    Alho J., Bharadwaj H., Khan S., Mamashli F., Perrachione T.K., Losh A., et al.

  47. A method to delineate de novo missense variants across pathways prioritizes genes linked to autism.

    Sci. Transl. Med., May 17, 2021

    Koire A., Katsonis P., Kim Y.W., Buchovecky C., Wilson S.J., and Lichtarge O.

  48. COVID-19 health and social care access for autistic people: European policy review.

    BMJ Open, May 15, 2021

    Oakley B., Tillmann J., Ruigrok A., Baranger A., Takow C., Charman T., et al.

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