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Simons Foundation
Simons Foundation

Autism Research Initiative (SFARI)

  • Funding

    Explore open funding opportunities for autism research.

    Funding Opportunities

    Early Career Awards

    • Fellows to Faculty Award
    • Shenoy Undergraduate Research Fellowship in Neuroscience (SURFiN)

    Investigator Awards

    • New Ideas

    Symposia & Travel Awards

    • Conferences & Courses Award

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    • Pivot Fellowship
    • Simons Society of Fellows

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    SFARI has supported over 750 investigators studying autism-related research.

    Research Highlights

    Research

    • SFARI Investigators
    • Funded Projects
    • Publications

    Data Access & Tools

    • SFARI Base
    • SFARI Gene

    Centers & Initiatives

    • Simons Center for the Social Brain
    • Simons Initiative for the Developing Brain

    Collaborations & Consortia

    • SFARI Sex Differences
    • Autism Rat Models Consortium
  • Resources

    Access data, biospecimens and participant cohorts through SFARI Base.

    SFARI Base

    Cohorts & Tissue Banks

    • SPARK
    • Simons Searchlight
    • Simons Simplex Collection
    • Autism BrainNet
    • Autism Inpatient Collection

    Other Resources

    • Animal Models
    • Biospecimens
    • Research Match

    Data Access & Tools

    • SFARI Base
    • SFARI Gene
    • SFARI Genomes Browser
    • Genotypes & Phenotypes in Families
  • News

    See the latest news and updates from SFARI.

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    SFARI’s mission is to advance the basic science of autism and related neurodevelopmental disorders.

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Autism Research Initiative (SFARI) Autism Rat Models Consortium

Autism Rat Models Consortium: Publications

From ARC

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  1. The ubiquitin system: A regulatory hub for intellectual disability and autism spectrum disorder.

    Mol. Neurobiol., April 30, 2020

    Kasherman M.A., Premarathne S., Burne T.H.J., Wood S.A., and M. Piper

  2. Multi-model functionalization of disease-associated PTEN missense mutations identifies multiple molecular mechanisms underlying protein dysfunction.

    Nat. Commun., April 28, 2020

    Post K.L., Belmadani M., Ganguly P., Meili F., Dingwall R., McDiarmid T.A., et al.

  3. Developmental loss of MeCP2 from VIP interneurons impairs cortical function and behavior.

    Elife, April 27, 2020

    Mossner J.M., R. Batista-Brito, Pant R., and J. Cardin

  4. Social attention in autism: Neural sensitivity to speech over background noise predicts encoding of social information.

    Front. Psychiatry, April 23, 2020

    Hernandez L.M., Green S.A., Lawrence K.E., Inada M., Liu J., S. Bookheimer, et al.

  5. Clinical impact of splicing in neurodevelopmental disorders.

    Genome Med., April 23, 2020

    S. Sanders, Schwartz G.B., and Farh K.K.

  6. Is motor impairment in autism spectrum disorder distinct from developmental coordination disorder? A report from the SPARK study.

    Phys. Ther., April 16, 2020

    Bhat A.N.

  7. Enhancing WNT signaling restores cortical neuronal spine maturation and synaptogenesis in Tbr1 mutants.

    Cell Rep., April 13, 2020

    Fazel Darbandi S., Robinson Schwartz S.E., Pai E.L., Everitt A., Turner M.L., B. Cheyette, et al.

  8. Social camouflaging in autistic and neurotypical adolescents: A pilot study of differences by sex and diagnosis.

    J. Autism Dev. Disord., April 7, 2020

    Jorgenson C., Lewis T., Rose C., and S. Kanne

  9. SCN2A channelopathies in the autism spectrum of neuropsychiatric disorders: A role for pluripotent stem cells?

    Mol. Autism, April 6, 2020

    Kruth K.A., Grisolano T.M., C. Ahern, and Williams A.J.

  10. Whole-genome and RNA sequencing reveal variation and transcriptomic coordination in the developing human prefrontal cortex.

    Cell Rep., April 6, 2020

    D. Werling, Pochareddy S., Choi J., An J.Y., Sheppard B., Peng M., et al.

  11. Use of longitudinal EEG measures in estimating language development in infants with and without familial risk for autism spectrum disorder.

    Neurobiol. Lang. (Camb.), April 5, 2020

    Wilkinson C.L., Gabard-Durnam L.J., Kapur K., H. Tager-Flusberg, Levin A.R., and C. Nelson

  12. Co-localization between sequence constraint and epigenomic information improves interpretation of whole-genome sequencing data.

    Am. J. Hum. Genet., April 1, 2020

    Xu D., Wang C., Kiryluk K., J. Buxbaum, and Ionita-Laza I.

  13. A computational tool (H-MAGMA) for improved prediction of brain-disorder risk genes by incorporating brain chromatin interaction profiles.

    Nat. Neurosci., March 31, 2020

    Sey N.Y.A., Hu B., Mah W., Fauni H., McAfee J.C., Rajarajan P., et al.

  14. The network structure of irritability and aggression in individuals with autism spectrum disorder.

    J. Autism Dev. Disord., March 31, 2020

    Hirota T., Deserno M., and McElroy E.

  15. Recurrent homozygous damaging mutation in TMX2, encoding a protein disulfide isomerase, in four families with microlissencephaly.

    J. Med. Genet., March 31, 2020

    Ghosh S.G., Wang L., Breuss M.W., Green J.D., Stanley V., Yang X., et al.

  16. Randomized crossover feasibility trial of helminthic Trichuris suis ova versus placebo for repetitive behaviors in adult autism spectrum disorder.

    World J. Biol. Psychiatry, March 30, 2020

    E. Hollander, Uzunova G., Taylor B.P., Noone R., Racine E., Doernberg E., et al.

  17. FMRP control of ribosome translocation promotes chromatin modifications and alternative splicing of neuronal genes linked to autism.

    Cell Rep., March 30, 2020

    Shah S., Molinaro G., Liu B., Wang R., K. Huber, and J. Richter

  18. Accuracy of short tandem repeats genotyping tools in whole exome sequencing data.

    F1000Res., March 23, 2020

    Halman A. and Oshlack A.

  19. The general impact of haploinsufficiency on brain connectivity underlies the pleiotropic effect of neuropsychiatric CNVs.

    medRxiv, March 23, 2020

    Moreau C., Huguet G., Urchs S., Douard E.A., Sharmarke H., Orban P., et al.

  20. The oft-overlooked massively parallel reporter assay: Where, when, and which psychiatric genetic variants are functional?

    bioRxiv, March 23, 2020

    Mulvey B., Lagunas T., and J. Dougherty

  21. Autism-misregulated eIF4G microexons control synaptic translation and higher order cognitive functions.

    Mol. Cell., March 18, 2020

    Gonatopoulos-Pournatzis T., Niibori R., Salter E.W., Weatheritt R.J., Tsang B., Farhangmehr S., et al.

  22. Cortical Foxp2 supports behavioral flexibility and developmental dopamine D1 receptor expression.

    Cereb. Cortex, March 13, 2020

    Co M., Hickey S.L., Kulkarni A., Harper M., and G. Konopka

  23. Forecasting risk gene discovery in autism with machine learning and genome-scale data.

    Sci. Rep., March 11, 2020

    Brueggeman L., Koomar T., and J. Michaelson

  24. Social stimuli induce activation of oxytocin neurons within the paraventricular nucleus of the hypothalamus to promote social behavior in male mice.

    J. Neurosci., March 10, 2020

    Resendez S.L., Namboodiri V.M.K., Otis J.M., Eckman L.E.H., Rodriguez-Romaguera J., Ung R.L., et al.

  25. Inhibitory regulation of calcium transients in prefrontal dendritic spines is compromised by a nonsense Shank3 mutation.

    Mol. Psychiatry, March 10, 2020

    Ali F., Shao L.X., Gerhard D.M., Sweasy K., Pothula S., C. Pittenger, et al.

  26. Interneuron transplantation rescues social behavior deficits without restoring wild-type physiology in a mouse model of autism with excessive synaptic inhibition.

    J. Neurosci., March 10, 2020

    Southwell D.G., Seifikar H., Malik R., Lavi K., Vogt D., J. Rubenstein, et al.

  27. Single-cell analysis of Foxp1-driven mechanisms essential for striatal development.

    Cell Rep., March 2, 2020

    Anderson A.G., Kulkarni A., Harper M., and G. Konopka

  28. Alternative splicing potentiates dysfunction of early-onset epileptic encephalopathy SCN2A variants.

    J. Gen. Physiol., March 1, 2020

    Thompson C.H., Ben-Shalom R., K. Bender, and A. George Jr.

  29. Autism heterogeneity in a densely sampled U.S. population: Results from the first 1,000 participants in the RI-CART study.

    Autism Res., February 29, 2020

    McCormick C.E.B., Kavanaugh B.C., Sipsock D., Righi G., Oberman L.M., Moreno De Luca D., et al.

  30. Mania- and anxiety-like behavior and impaired maternal care in female diacylglycerol kinase eta and iota double knockout mice.

    Genes Brain Behav., February 29, 2020

    Bartsch V.B., Lord J.S, G. Diering, and M. Zylka

  31. Large-scale analyses of the relationship between sex, age and intelligence quotient heterogeneity and cortical morphometry in autism spectrum disorder.

    Mol. Psychiatry, February 29, 2020

    Bedford S.A., Park M.T.M., Devenyi G.A., Tullo S., Germann J., Patel R., et al.

  32. Natural selection influenced the genetic architecture of brain structure, behavioral and neuropsychiatric traits.

    bioRxiv, February 27, 2020

    Wendt F.R., Pathak G.A., Overstreet C., Tylee D.S., Gelernter J., Atkinson E.G., et al.

  33. Maternal experience-dependent cortical plasticity in mice is circuit- and stimulus-specific and requires MECP2.

    J. Neurosci., February 11, 2020

    Lau B.Y.B., Krishnan K., Huang Z.J., and S. Shea

  34. Genome-wide molecular effects of the neuropsychiatric 16p11 CNVs in an iPSC-to-iN neuronal model.

    bioRxiv, February 10, 2020

    Ward T.R., Zhang X., Leung L.C., Zhou B., Muench K., Roth J.G., et al.

  35. Beliefs in vaccine as causes of autism among SPARK cohort caregivers.

    Vaccine, February 10, 2020

    E. Fombonne, R. Goin-Kochel, B. O'Roak, and SPARK Consortium.

  36. Exploring the familial role of social responsiveness differences between savant and non-savant children with autism.

    Sci. Rep., February 9, 2020

    Daniel E. and Menashe I.

  37. Large-scale exome sequencing study implicates both developmental and functional changes in the neurobiology of autism.

    Cell, February 5, 2020

    Satterstrom F.K., Kosmicki J.A., Wang J., Breen M.S., De Rubeis S., An J.Y., et al.

  38. Usp9X controls ankyrin-repeat domain protein homeostasis during dendritic spine development.

    Neuron, February 4, 2020

    Yoon S., Parnell E., Kasherman M., Forrest M.P., Myczek K., Premarathne S., et al.

  39. Mechanisms underlying gain modulation in the cortex.

    Nat. Rev. Neurosci., January 31, 2020

    Ferguson K.A. and J. Cardin

  40. Psychotic symptoms in 16p11.2 copy-number variant carriers.

    Autism Res., January 31, 2020

    Jutla A., Turner J.B., L. Green Snyder, W. Chung, and J. Veenstra-VanderWeele

  41. Using multiple measurements of tissue to estimate cell-type-specific gene expression via deconvolution.

    Bioinformatics, January 31, 2020

    Wang J., B. Devlin, and K. Roeder

  42. Animal functional magnetic resonance imaging: Trends and path toward standardization.

    Front. Neuroinform., January 22, 2020

    Mandino F., Cerri D.H., Garin C.M., Straathof M., van Tilborg G.A.F., Chakravarty M.M., Dhenain M., Dijkhuizen R.M., A. Gozzi, and Hess A., Keilholz S.D., Lerch J.P., Shih Y.I., Grandjean J.

  43. Autism spectrum disorder.

    Nat. Rev. Dis. Primers, January 15, 2020

    C. Lord, Brugha T.S., Charman T., Cusack J., Dumas G., T. Frazier, et al.

  44. Partial loss of USP9X function leads to a male neurodevelopmental and behavioral disorder converging on transforming growth factor beta signaling.

    Biol. Psychiatry, January 14, 2020

    Johnson B.V., Kumar R., Oishi S., Alexander S., Kasherman M., Vega M.S., et al.

  45. A sex difference in the response of the rodent postsynaptic density to synGAP haploinsufficiency.

    Elife, January 14, 2020

    Mastro T.L., Preza A., Basu S., Chattarji S., Till S.M., P. Kind, et al.

  46. Synaptic dysfunction in human neurons with autism-associated deletions in PTCHD1-AS.

    Biol. Psychiatry, January 14, 2020

    Ross P.J., Zhang W., Mok R.S.F., Zaslavsky K., Deneault E., D’Abate L., et al.

  47. Common functional networks in the mouse brain revealed by multi-centre resting-state fMRI analysis.

    NeuroImage, January 14, 2020

    Grandjean J., Canella C., Anckaerts C., Ayrancı G., Bougacha S., Bienert T., et al.

  48. Towards neurosubtypes in autism.

    PsyArXiv, January 9, 2020

    Hong S.-J., Vogelstein J.T., A. Gozzi, Bernhardt B.C., Thomas Yeo B.T., Milham M., et al.

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