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Simons Foundation
Simons Foundation

Autism Research Initiative (SFARI)

  • Funding

    Explore open funding opportunities for autism research.

    Funding Opportunities

    Early Career Awards

    • Fellows to Faculty Award
    • Shenoy Undergraduate Research Fellowship in Neuroscience (SURFiN)

    Investigator Awards

    • New Ideas

    Symposia & Travel Awards

    • Conferences & Courses Award

    Shared Programs

    • Pivot Fellowship
    • Simons Society of Fellows

    Resource for Applying

    • Open Funding Opportunities
    • Policies & Procedures
    • Instructional Videos
    • Past Funded Work
  • Supported Work

    SFARI has supported over 750 investigators studying autism-related research.

    Research Highlights

    Research

    • SFARI Investigators
    • Funded Projects
    • Publications

    Data Access & Tools

    • SFARI Base
    • SFARI Gene

    Centers & Initiatives

    • Simons Center for the Social Brain
    • Simons Initiative for the Developing Brain

    Collaborations & Consortia

    • SFARI Sex Differences
    • Autism Rat Models Consortium
  • Resources

    Access data, biospecimens and participant cohorts through SFARI Base.

    SFARI Base

    Cohorts & Tissue Banks

    • SPARK
    • Simons Searchlight
    • Simons Simplex Collection
    • Autism BrainNet
    • Autism Inpatient Collection

    Other Resources

    • Animal Models
    • Biospecimens
    • Research Match

    Data Access & Tools

    • SFARI Base
    • SFARI Gene
    • SFARI Genomes Browser
    • Genotypes & Phenotypes in Families
  • News

    See the latest news and updates from SFARI.

    All News

    News

    • SFARI News
    • Research Highlights
    • Meeting & Workshop Reports
    • Funding News
  • About

    SFARI’s mission is to advance the basic science of autism and related neurodevelopmental disorders.

    About SFARI

    About SFARI

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Autism Research Initiative (SFARI) Autism Rat Models Consortium

Autism Rat Models Consortium: Publications

From ARC

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Results

  1. Oligogenic effects of 16p11.2 copy number variation on craniofacial development.

    Cell Rep., September 23, 2019

    Qiu Y., Arbogast T., Lorenzo S.M., Li H., Tang S.C., Richardson E., et al.

  2. ST-Steiner: A spatio-temporal gene discovery algorithm.

    Bioinformatics, September 14, 2019

    Norman U. and A. E. Çiçek

  3. Enhanced population coding for rewarded choices in the medial frontal cortex of the mouse.

    Cereb. Cortex, September 12, 2019

    Siniscalchi M.J., Wang H., and A. Kwan

  4. FMRP binding to a ranked subset of long genes is revealed by coupled CLIP and TRAP in specific neuronal cell types.

    bioRxiv, September 10, 2019

    Van Driesche S.J., Sawicka K., C. Zhang, Hung S.K.Y., Park C.Y., Fak J.J., et al.

  5. Sensorimotor cortical oscillations during movement preparation in 16p11.2 deletion carriers.

    J. Neurosci., September 10, 2019

    Hinkley L.B.N., Dale C., Luks T.L., Findlay A.M., Bukshpun P., Pojman N., et al.

  6. Slower binocular rivalry in the autistic brain.

    Curr. Biol., September 8, 2019

    Spiegel A., Mentch J., Haskins A.J., and C. Robertson

  7. Getting to the cores of autism.

    Cell, September 4, 2019

    L. Iakoucheva, A. Muotri, and J. Sebat

  8. Shared risk alleles with discordant polygenic effects: Disentangling the genetic overlap between ASD and ADHD.

    bioRxiv, September 4, 2019

    Verhoef E., Grove J., Shapland C.Y., Demontis D., Burgess S., Rai D., et al.

  9. Thalamocortical circuit motifs: A general framework.

    Neuron, September 3, 2019

    M. Halassa and Sherman S.M.

  10. Memo1-mediated tiling of radial glial cells facilitates cerebral cortical development.

    Neuron, September 2, 2019

    Nakagawa N., Plestant C., Yabuno-Nakagawa K., Li J., Lee J., Huang C.-W., et al.

  11. Social and non-social autism symptoms and trait domains are genetically dissociable.

    Commun. Biol., September 2, 2019

    V. Warrier, Toro R., Won H., Leblond C.S., Cliquet F., Delorme R., et al.

  12. Profiling allele-specific gene expression in brains from individuals with autism spectrum disorder reveals preferential minor allele usage.

    Nat. Neurosci., August 31, 2019

    Lee C., Kang E.Y., M. Gandal, Eskin E., and D. Geschwind

  13. Atypical neural variability in carriers of 16p11.2 copy number variants.

    Autism Res., August 31, 2019

    Al-Jawahiri R., Jones M., and Milne E.

  14. Differences in profiles of emotional behavioral problems across instruments in verbal versus minimally verbal children with autism spectrum disorder.

    Autism Res., August 31, 2019

    Fok M. and Bal V.H.

  15. Excitation-inhibition balance as a framework for investigating mechanisms in neuropsychiatric disorders.

    Mol. Psychiatry, August 31, 2019

    V. Sohal and J. Rubenstein

  16. Immunity and mental illness: Findings from a Danish population-based immunogenetic study of seven psychiatric and neurodevelopmental disorders.

    Eur. J. Hum. Genet., August 31, 2019

    Nudel R., Benros M.E., Krebs M.D., Allesøe R.L., Lemvigh C.K., Bybjerg-Grauholm J., et al.

  17. Exome sequencing of 457 autism families recruited online provides evidence for novel ASD genes.

    npj Genom. Med., August 22, 2019

    P. Feliciano, Zhou X., Astrovskaya I., T. Turner, Wang T., Brueggeman L., et al.

  18. The autism-associated gene Scn2a contributes to dendritic excitability and synaptic function in the prefrontal cortex.

    Neuron, August 20, 2019

    Spratt P.W.E., Ben-Shalom R., Keeshen C.M., Burke Jr. K.J., Clarkson R.L., S. Sanders, et al.

  19. In vivo functional study of disease-associated rare human variants using Drosophila.

    J. Vis. Exp., August 19, 2019

    Harnish J.M., Deal S.L., Chao H.T., M. Wangler, and S. Yamamoto

  20. Habituation learning is a widely affected mechanism in Drosophila models of intellectual disability and autism spectrum disorders.

    Biol. Psychiatry, August 14, 2019

    Fenckova M., Blok L.E.R., Asztalos L., Goodman D.P., Cizek P., Singgih E.L., et al.

  21. Evidence of assortative mating in autism spectrum disorder.

    Biol. Psychiatry, August 14, 2019

    Connolly S., Anney R., Gallagher L., and Heron E.A.

  22. Primary complex motor stereotypies are associated with de novo damaging DNA coding mutations that identify candidate risk genes and biological pathways.

    bioRxiv, August 13, 2019

    T. Fernandez, Williams Z.P., Kline T., Rajendran S., Augustine F., Wright N., et al.

  23. Placental neurosteroids shape cerebellar development and social behaviour.

    bioRxiv, August 13, 2019

    Vacher C., O’Reilly J.J., Salzbank J., Lacaille H., Bakalar D., Sebaoui-Illoul S., et al.

  24. Reduced frontal gamma power at 24 months is associated with better expressive language in toddlers at risk for autism.

    Autism Research, August 11, 2019

    Wilkinson C.L., Levin A.R., Gabard-Durnam L.J., H. Tager-Flusberg, and C. Nelson

  25. Inherited and de novo genetic risk for autism impacts shared networks.

    Cell, August 7, 2019

    Ruzzo E.K., Pérez-Cano L., Jung J.Y., Wang L.K., Kashef-Haghighi D., Hartl C., et al.

  26. Targeting peripheral somatosensory neurons to improve tactile-related phenotypes in ASD models.

    Cell, August 7, 2019

    L. Orefice, Mosko J.R., Morency D.T., Wells M.F., Tasnim A., Mozeika S.M., et al.

  27. Exosomes regulate neurogenesis and circuit assembly.

    Proc. Natl. Acad. Sci., August 5, 2019

    Sharma P., Mesci P., Carromeu C., McClatchy D.R., Schiapparelli L., Yates J.R. 3rd, et al.

  28. Investigating potential biomarkers in autism spectrum disorder.

    Front. Integr. Neurosci., August 1, 2019

    C. Bridgemohan, Cochran D.M., Howe Y.J., Pawlowski K., Zimmerman A.W., Anderson G.M., et al.

  29. A third linear association between Olduvai (DUF1220) copy number and severity of the classic symptoms of inherited autism.

    Am. J. Psychiatry, July 31, 2019

    Davis J.M., Heft I., S. Scherer, and J. Sikela

  30. Predicting aggression to others in youth with autism using a wearable biosensor.

    Autism Res., July 31, 2019

    M. Goodwin, Mazefsky C.A., Ioannidis S., Erdogmus D., and M. Siegel

  31. Clinical and genetic characterization of individuals with predicted deleterious PHIP variants.

    Cold Spring Harb. Mol. Case Stud., July 31, 2019

    Craddock K.E., Okur V., Wilson A., Gerkes E.H., Ramsey K., Heeley J.M., et al.

  32. Epilepsy and autism severity: A study of 6,975 children.

    Autism Res., July 31, 2019

    Ewen J.B., Marvin A.R., Law K., and P. Lipkin

  33. A pathogenic CtBP1 missense mutation causes altered cofactor binding and transcriptional activity.

    Neurogenetics, July 31, 2019

    Beck D.B., Subramanian T., Vijayalingam S., Ezekiel U.R., Donkervoort S., Yang M.L., et al.

  34. Placental programming of neuropsychiatric disease.

    Pediatr. Res., July 31, 2019

    Kratimenos P. and A. Penn

  35. Linking social motivation with social skill: The role of emotion dysregulation in autism spectrum disorder.

    Dev. Psychopathol., July 31, 2019

    Neuhaus E., S. Webb, and R. Bernier

  36. Next-Generation Sequencing in Autism Spectrum Disorder.

    Cold Spring Harb. Perspect. Med., July 31, 2019

    S. Sanders

  37. Pharmacological enhancement of KCC2 gene expression exerts therapeutic effects on human Rett syndrome neurons and Mecp2 mutant mice

    Sci. Transl. Med., July 30, 2019

    X. Tang, Drotar J., Li K., Clairmont C.D., Brumm A.S., Sullins A.J., et al.

  38. Leveraging biobank-scale rare and common variant analyses to identify ASPHD1 as the main driver of reproductive traits in the 16p11.2 locus.

    bioRxiv, July 26, 2019

    Männik K., Arbogast T., Lepamets M., Lepik K., Pellaz A., Ademi H., et al.

  39. FMRP modulates neural differentiation through m6A-dependent mRNA nuclear export.

    Cell Rep., July 22, 2019

    Edens B.M., Vissers C., Su J., Arumugam S., Xu Z., Shi H., et al.

  40. AGO CLIP reveals an activated network for acute regulation of brain glutamate homeostasis in ischemic stroke.

    Cell Rep., July 22, 2019

    Kobayashi M., Benakis C., Anderson C., Moore M.J., Poon C., Uekawa K., et al.

  41. Infraslow state fluctuations govern spontaneous fMRI network dynamics.

    Curr. Biol., July 21, 2019

    Gutierrez-Barragan D., M. Basson, S. Panzeri, and A. Gozzi

  42. Antigenic targets of patient and maternal autoantibodies in autism spectrum disorder.

    Front. Immunol., July 18, 2019

    Mazón-Cabrera R., Vandormael P., and V. Somers

  43. Enhancing rigor and reproducibility in maternal immune activation models: Practical considerations and predicting resilience and susceptibility using baseline immune responsiveness before pregnancy.

    bioRxiv, July 14, 2019

    Estes M.L., Farrelly K., Cameron S., Aboubechara J.P., Haapanen L., Schauer J.D., et al.

  44. Paternal-age-related de novo mutations and risk for five disorders.

    Nat. Commun., July 9, 2019

    Taylor J.L., Debost J.P.G., Morton S.U., Wigdor E.M., Heyne H.O., Lal D., et al.

  45. A genome-wide scan statistic framework for whole-genome sequence data analysis.

    Nat. Commun., July 8, 2019

    He Z., Xu B., J. Buxbaum, and Ionita-Laza I.

  46. The effect of the genetic liability to autism spectrum disorder on emotion recognition in young unaffected probands from a population-based cohort.

    medRxiv, July 8, 2019

    Wendt F.R., Carvalho C.M., Gelernter J., and R. Polimanti

  47. Deletion of autism risk gene Shank3 disrupts prefrontal connectivity.

    J. Neurosci., July 2, 2019

    Pagani M., Bertero A., Liska A., Galbusera A., Sabbioni M., Barsotti N., et al.

  48. Genome-wide DNA methylation profiling identifies convergent molecular signatures associated with idiopathic and syndromic autism in post-mortem human brain tissue.

    Hum. Mol. Genet., June 30, 2019

    Wong C.C.Y., Smith R.G., Hannon E., Ramaswami G., Parikshak N.N., Assary E., et al.

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