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Simons Foundation
Simons Foundation

Autism Research Initiative (SFARI)

  • Funding

    Explore open funding opportunities for autism research.

    Funding Opportunities

    Early Career Awards

    • Fellows to Faculty Award
    • Shenoy Undergraduate Research Fellowship in Neuroscience (SURFiN)

    Investigator Awards

    • New Ideas

    Symposia & Travel Awards

    • Conferences & Courses Award

    Shared Programs

    • Pivot Fellowship
    • Simons Society of Fellows

    Resource for Applying

    • Open Funding Opportunities
    • Policies & Procedures
    • Instructional Videos
    • Past Funded Work
  • Supported Work

    SFARI has supported over 750 investigators studying autism-related research.

    Research Highlights

    Research

    • SFARI Investigators
    • Funded Projects
    • Publications

    Data Access & Tools

    • SFARI Base
    • SFARI Gene

    Centers & Initiatives

    • Simons Center for the Social Brain
    • Simons Initiative for the Developing Brain

    Collaborations & Consortia

    • SFARI Sex Differences
    • Autism Rat Models Consortium
  • Resources

    Access data, biospecimens and participant cohorts through SFARI Base.

    SFARI Base

    Cohorts & Tissue Banks

    • SPARK
    • Simons Searchlight
    • Simons Simplex Collection
    • Autism BrainNet
    • Autism Inpatient Collection

    Other Resources

    • Animal Models
    • Biospecimens
    • Research Match

    Data Access & Tools

    • SFARI Base
    • SFARI Gene
    • SFARI Genomes Browser
    • Genotypes & Phenotypes in Families
  • News

    See the latest news and updates from SFARI.

    All News

    News

    • SFARI News
    • Research Highlights
    • Meeting & Workshop Reports
    • Funding News
  • About

    SFARI’s mission is to advance the basic science of autism and related neurodevelopmental disorders.

    About SFARI

    About SFARI

    • About
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Autism Research Initiative (SFARI) Autism Rat Models Consortium

Autism Rat Models Consortium: Publications

From ARC

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  1. Perception of cry characteristics in 1-month-old infants later diagnosed with autism spectrum disorder.

    J. Autism Dev. Disord., February 28, 2019

    English M.S., E. Tenenbaum, Levine T.P., Lester B.M., and S. Sheinkopf

  2. A longitudinal study of parent-reported sensory responsiveness in toddlers at-risk for autism.

    J. Child Psychol. Psychiatry, February 28, 2019

    Wolff J.J., Dimian A.F., K. Botteron, S. Dager, J. Elison, Estes A.M., et al.

  3. Impaired voice processing in reward and salience circuits predicts social communication in children with autism.

    Elife, February 25, 2019

    Abrams D.A., Padmanabhan A., Chen T., Odriozola P., Baker A.E., Kochalka J., et al.

  4. Modeling autism-related disorders in mice with maternal immune activation (MIA).

    Methods Mol. Biol., February 23, 2019

    Lammert C.R. and J. Lukens

  5. Aberrant somatosensory processing and connectivity in mice lacking Engrailed-2.

    J. Neurosci., February 19, 2019

    Chelini G., Zerbi V., Cimino L., Grigoli A., Markicevic M., Libera F., et al.

  6. Differential NOVA2-mediated splicing in excitatory and inhibitory neurons regulates cortical development and cerebellar function.

    Neuron, February 19, 2019

    Saito Y., Yuan Y., Zucker-Scharff I., Fak J.J., Jereb S., Tajima Y., et al.

  7. Increased excitation-inhibition ratio stabilizes synapse and circuit excitability in four autism mouse models.

    Neuron, February 19, 2019

    Antoine M.W., Langberg T., Schnepel P., and D. Feldman

  8. Clinical presentation of a complex neurodevelopmental disorder caused by mutations in ADNP.

    Biol. Psychiatry, February 14, 2019

    Van Dijck A., Vulto-van Silfhout A.T., Cappuyns E., van der Werf I.M., Mancini G.M., Tzschach A., et al.

  9. Recessive rare variants in deoxyhypusine synthase, an enzyme involved in the synthesis of hypusine, are associated with a neurodevelopmental disorder.

    Am. J. Hum. Genet., February 6, 2019

    Ganapathi M., Padgett L.R., Yamada K., O. Devinsky, Willaert R., Person R., et al.

  10. Establishing cerebral organoids as models of human-specific brain evolution.

    Cell, February 3, 2019

    Pollen A.A., Bhaduri A., Andrews M.G., T. Nowakowski, Meyerson O.S., Mostajo-Radji M.O., et al.

  11. mTOR suppresses macroautophagy during postnatal development of the striatum.

    bioRxiv, January 31, 2019

    Lieberman O., Pigulevskiy I., Post M., D. Sulzer, and Santini E.

  12. Predicting splicing from primary sequence with deep learning.

    Cell, January 23, 2019

    Jaganathan K., Kyriazopoulou Panagiotopoulou S., McRae J.F., Darbandi S.F., Knowles D., Li Y.I., et al.

  13. Disentangling polygenic associations between attention-deficit/hyperactivity disorder, educational attainment, literacy and language.

    Transl. Psychiatry, January 23, 2019

    Verhoef E., Demontis D., Burgess S., Shapland C.Y., Dale P.S., Okbay A., et al.

  14. Both rare and common genetic variants contribute to autism in the Faroe Islands.

    NPJ Genom., January 20, 2019

    Leblond C.S., Cliquet F., Carton C., Huguet G., Mathieu A., Kergrohen T., et al.

  15. An interaction-based model for neuropsychiatric features of copy-number variants.

    PLoS Genet., January 16, 2019

    Jensen M. and S. Girirajan

  16. Psychiatric disorders in children with 16p11.2 deletion and duplication.

    Transl. Psychiatry, January 15, 2019

    Niarchou M., Chawner S., Doherty J.L., Maillard A.M., Jacquemont S., W. Chung, et al.

  17. Dendritic spines in early postnatal fragile X mice are insensitive to novel sensory experience.

    J. Neurosci., January 15, 2019

    Arroyo E.D., Fiole D., Mantri S., Huang C.X., and C. Portera-Cailliau

  18. Single-cell RNA sequencing of microglia throughout the mouse lifespan and in the injured brain reveals complex cell-state changes.

    Immunity, January 14, 2019

    Hammond T.R., Dufort C., Dissing-Olesen L., Giera S., Young A., Wysoker A., et al.

  19. Single-cell transcriptomic analysis of mouse neocortical development.

    Nat. Commun., January 10, 2019

    Loo L., Simon J.M., Xing L., McCoy E.S., Niehaus J.K., Guo J., et al.

  20. Customized head molds reduce motion during resting state fMRI scans.

    Neuroimage, January 8, 2019

    Power J.D., Silver B.M., Silverman M.R., Ajodan E.L., Bos D.J., and R. Jones

  21. Nucleosome turnover regulates histone methylation patterns over the genome.

    Mol. Cell, January 2, 2019

    Chory E.J., Calarco J.P., Hathaway N.A., Bell O., Neel D.S., and G. Crabtree

  22. The NeuroDev study: Phenotypic and genetic characterization of neurodevelopmental disorders in Kenya and South Africa.

    Neuron, January 1, 2019

    de Menil V., Hoogenhout M., Kipkemoi P., Kamuya D., Eastman E., Galvin A., et al.

  23. Spectrum or subtypes? A latent profile analysis of restricted and repetitive behaviours in autism.

    Res. Autism Spectr. Disord., January 1, 2019

    Zheng L., Grove R., and Eapen V.

  24. Outgroup machine learning approach identifies single nucleotide variants in noncoding DNA associated with autism spectrum disorder.

    Pac. Symp. Biocomput., December 31, 2018

    Varma M., Paskov K.M., Jung J.Y., Sierra Chrisman B., Stockham N.T., Washington P.Y., et al.

  25. Early motor abilities in infants at heightened versus low risk for ASD: A Baby Siblings Research Consortium (BSRC) study.

    J. Abnorm. Psychol., December 31, 2018

    Iverson J.M., F. Shic, Wall C.A., Chawarska K., Curtin S., Estes A., et al.

  26. Interacting neural ensembles in orbitofrontal cortex for social and feeding behaviour.

    Nature, December 31, 2018

    Jennings J.H., Kim C.K., Marshel J.H., Raffiee M., Ye L., Quirin S., et al.

  27. Neurodevelopmental disease genes implicated by de novo mutation and copy number variation morbidity.

    Nat. Genet., December 31, 2018

    Coe B.P., H. Stessman, Sulovari A., Geisheker M.R., Bakken T.E., Lake A.M., et al.

  28. The ASD living biology: From cell proliferation to clinical phenotype.

    Mol. Psychiatry, December 31, 2018

    E. Courchesne, Pramparo T., Gazestani V.H., M. Lombardo, K. Pierce, and Lewis N.E.

  29. Deregulation of synaptic plasticity in autism.

    Neurosci. Lett., December 31, 2018

    C. Hansel

  30. Integrative functional genomic analysis of human brain development and neuropsychiatric risks.

    Science, December 13, 2018

    Li M., Santpere G., Imamura Kawasawa Y., Evgrafov O.V., Gulden F.O., Pochareddy S., et al.

  31. Transcriptome-wide isoform-level dysregulation in ASD, schizophrenia, and bipolar disorder.

    Science, December 13, 2018

    M. Gandal, Zhang P., Hadjimichael E., Walker R.L., Chen C., Liu S., et al.

  32. Genome-wide de novo risk score implicates promoter variation in autism spectrum disorder.

    Science, December 13, 2018

    An J.Y., Lin K., Zhu L., D. Werling, Dong S., Brand H., et al.

  33. Inherited and multiple de novo mutations in autism/developmental delay risk genes suggest a multifactorial model.

    Mol. Autism, December 12, 2018

    Guo H., Wang T., Wu H., Long M., Coe B.P., Li H., et al.

  34. Cellular-resolution imaging of vestibular processing across the larval zebrafish brain.

    Curr. Biol., December 2, 2018

    Favre-Bulle I.A., Vanwalleghem G., Taylor M.A., Rubinsztein-Dunlop H., and E. Scott

  35. Diffuse light-sheet microscopy for stripe-free calcium imaging of neural populations.

    J. Biophotonics, November 30, 2018

    Taylor M.A., Vanwalleghem G.C., Favre-Bulle I.A., and E. Scott

  36. Selfish mutations dysregulating RAS-MAPK signaling are pervasive in aged human testes.

    Genome Res., November 30, 2018

    Maher G.J., Ralph H.K., Ding Z., Koelling N., Mlcochova H., Giannoulatou E., et al.

  37. Neural coding of sex-specific social information in the mouse brain.

    Curr. Opin. Neurobiol., November 30, 2018

    Li Y. and C. Dulac

  38. Psychometric properties of the Simons Simplex Collection sleep interview.

    J. Nurs. Meas., November 30, 2018

    Johansson A.E.E., Rohay J.M., Chasens E.R., and J. Valdivia Espino

  39. Brain organoids and the study of neurodevelopment.

    Trends Mol. Med., November 30, 2018

    Trujillo C.A. and A. Muotri

  40. Thalamic regulation of switching between cortical representations enables cognitive flexibility.

    Nat. Neurosci., November 30, 2018

    Rikhye R.V., Gilra A., and M. Halassa

  41. Large-scale associations between the leukocyte transcriptome and BOLD responses to speech differ in autism early language outcome subtypes.

    Nat. Neurosci., November 30, 2018

    M. Lombardo, Pramparo T., Gazestani V., V. Warrier, Bethlehem R.A.I., Carter Barnes C., et al.

  42. Haploinsufficiency of the intellectual disability gene SETD5 disturbs developmental gene expression and cognition.

    Nat. Neurosci., November 30, 2018

    Deliu E., Arecco N., Morandell J., Dotter C.P., Contreras X., Girardot C., et al.

  43. Partial loss of psychiatric risk gene Mir137 in mice causes repetitive behavior and impairs sociability and learning via increased Pde10a.

    Nat. Neurosci., November 30, 2018

    Cheng Y., Wang Z.M., Tan W., Wang X., Li Y., Bai B., et al.

  44. Regulation of cell-type-specific transcriptomes by microRNA networks during human brain development.

    Nat. Neurosci., November 30, 2018

    T. Nowakowski, Rani N., Golkaram M., Zhou H.R., Alvarado B., Huch K., et al.

  45. Rbfox1 mediates cell-type-specific splicing in cortical interneurons.

    Neuron, November 20, 2018

    Wamsley B., Jaglin X.H., Favuzzi E., Quattrocolo G., Nigro M.J., Yusuf N., et al.

  46. Problem behaviors in autism spectrum disorder: Association with verbal ability and adapting/coping skills.

    J. Autism Dev. Disord., October 31, 2018

    Williams D.L., M. Siegel, and Mazefsky C.A.

  47. Genome-wide CRISPR-Cas9 interrogation of splicing networks reveals a mechanism for recognition of autism-misregulated neuronal microexons.

    Mol. Cell, October 31, 2018

    Gonatopoulos-Pournatzis T., Wu M., Braunschweig U., Roth J., Han H., Best A.J., et al.

  48. m6A facilitates hippocampus-dependent learning and memory through YTHDF1.

    Nature, October 31, 2018

    Shi H., Zhang X., Weng Y.L., Lu Z., Liu Y., Lu Z., et al.

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