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Simons Foundation
Simons Foundation

Autism Research Initiative (SFARI)

  • Funding

    Explore open funding opportunities for autism research.

    Funding Opportunities

    Early Career Awards

    • Fellows to Faculty Award
    • Shenoy Undergraduate Research Fellowship in Neuroscience (SURFiN)

    Investigator Awards

    • New Ideas

    Symposia & Travel Awards

    • Conferences & Courses Award

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    • Pivot Fellowship
    • Simons Society of Fellows

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    • Open Funding Opportunities
    • Policies & Procedures
    • Instructional Videos
    • Past Funded Work
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    SFARI has supported over 750 investigators studying autism-related research.

    Research Highlights

    Research

    • SFARI Investigators
    • Funded Projects
    • Publications

    Data Access & Tools

    • SFARI Base
    • SFARI Gene

    Centers & Initiatives

    • Simons Center for the Social Brain
    • Simons Initiative for the Developing Brain

    Collaborations & Consortia

    • SFARI Sex Differences
    • Autism Rat Models Consortium
  • Resources

    Access data, biospecimens and participant cohorts through SFARI Base.

    SFARI Base

    Cohorts & Tissue Banks

    • SPARK
    • Simons Searchlight
    • Simons Simplex Collection
    • Autism BrainNet
    • Autism Inpatient Collection

    Other Resources

    • Animal Models
    • Biospecimens
    • Research Match

    Data Access & Tools

    • SFARI Base
    • SFARI Gene
    • SFARI Genomes Browser
    • Genotypes & Phenotypes in Families
  • News

    See the latest news and updates from SFARI.

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    • SFARI News
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    • Meeting & Workshop Reports
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    SFARI’s mission is to advance the basic science of autism and related neurodevelopmental disorders.

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Autism Research Initiative (SFARI) Autism Rat Models Consortium

Autism Rat Models Consortium: Publications

From ARC

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  1. The emergence of network inefficiencies in infants with autism spectrum disorder.

    Biol. Psychiatry, July 31, 2017

    Lewis J.D., A. Evans, Pruett J.R., Jr., K. Botteron, McKinstry R.C., L. Zwaigenbaum, et al.

  2. Post-zygotic single-nucleotide mosaicisms contribute to the etiology of autism spectrum disorder and autistic traits and the origin of mutations.

    Hum. Mutat., July 31, 2017

    Dou Y., Yang X., Li Z., Wang S., Zhang Z., Ye A.Y., et al.

  3. Brain carnitine deficiency causes nonsyndromic autism with an extreme male bias: A hypothesis.

    Bioessays, July 31, 2017

    A. Beaudet

  4. Differing developmental trajectories in heart rate responses to speech stimuli in infants at high and low risk for autism spectrum disorder.

    J. Autism Dev. Disord., July 31, 2017

    Perdue K.L., Edwards L.A., H. Tager-Flusberg, and C. Nelson

  5. Opposing effects on Nav1.2 function underlie differences between SCN2A variants observed in individuals with autism spectrum disorder or infantile seizures.

    Biol. Psychiatry, July 31, 2017

    Ben-Shalom R., Keeshen C.M., Berrios K.N., An J.Y., S. Sanders, and K. Bender

  6. Targeted interneuron depletion in the dorsal striatum produces autism-like behavioral abnormalities in male but not female mice.

    Biol. Psychiatry, July 31, 2017

    Rapanelli M., Frick L.R., Xu M., Groman S.M., Jindachomthong K., Tamamaki N., et al.

  7. The autism-linked UBE3AT485A mutant E3 ubiquitin ligase activates the Wnt/beta-catenin pathway by inhibiting the proteasome.

    J. Biol. Chem., July 27, 2017

    J. Yi, Paranjape S.R., Walker M.P., Choudhury R., Wolter J.M., Fragola G., et al.

  8. Pupil adaptation corresponds to quantitative measures of autism traits in children.

    Sci. Rep., July 24, 2017

    DiCriscio A.S. and V. Troiani

  9. Retrograde synaptic inhibition is mediated by alpha-neurexin binding to the alpha2delta subunits of N-type calcium channels.

    Neuron, July 18, 2017

    Tong X.J., Lopez-Soto E.J., Li L., Liu H., Nedelcu D., Lipscombe D., et al.

  10. Evolution of the human nervous system function, structure, and development.

    Cell, July 12, 2017

    A. Sousa, Meyer K.A., Santpere G., Gulden F.O., and N. Sestan

  11. Measuring shared variants in cohorts of discordant siblings with applications to autism.

    Proc. Natl. Acad. Sci. USA, July 2, 2017

    Ye K., I. Iossifov, Levy D., Yamrom B., Buja A., A. Krieger, et al.

  12. A rapid chemical-genetic screen utilizing impaired movement phenotypes in C. elegans: Input into genetics of neurodevelopmental disorders.

    Exp. Neurol., June 30, 2017

    Schmeisser K., Fardghassemi Y., and A. Parker

  13. Shorter sleep duration is associated with social impairment and comorbidities in ASD.

    Autism Res., June 30, 2017

    Veatch O.J., J. Sutcliffe, Z. Warren, Keenan B.T., Potter M.H., and Malow B.A.

  14. Multisensory speech perception in autism spectrum disorder: From phoneme to whole-word perception.

    Autism Res., June 30, 2017

    Stevenson R.A., Baum S.H., Segers M., Ferber S., Barense M.D., and M. Wallace

  15. UBE3A loss increases excitability and blunts orientation tuning in the visual cortex of Angelman syndrome model mice.

    J. Neurophysiol., June 30, 2017

    Wallace M.L., van Woerden G.M., Y. Elgersma, Smith S.L., and B. Philpot

  16. Polygenic transmission disequilibrium confirms that common and rare variation act additively to create risk for autism spectrum disorders.

    Nat. Genet., June 30, 2017

    Weiner D.J., Wigdor E.M., Ripke S., Walters R.K., Kosmicki J.A., Grove J., et al.

  17. Mapping 22q11.2 gene dosage effects on brain morphometry.

    J. Neurosci., June 27, 2017

    Lin A., Ching C.R.K., Vajdi A., Sun D., Jonas R.K., Jalbrzikowski M., et al.

  18. Neuroanatomy in mouse models of Rett syndrome is related to the severity of Mecp2 mutation and behavioral phenotypes.

    Mol. Autism, June 25, 2017

    Allemang-Grand R., Ellegood J., Spencer Noakes L., Ruston J., Justice M., Nieman B.J., et al.

  19. Epidemiological and serological investigation into the role of gestational maternal influenza virus infection and autism spectrum disorders.

    mSphere, June 20, 2017

    Mahic M., Che X., Susser E., Levin B., Reichborn-Kjennerud T., Magnus P., et al.

  20. Hierarchical cortical transcriptome disorganization in autism.

    Mol. Autism, June 20, 2017

    M. Lombardo, E. Courchesne, Lewis N.E., and Pramparo T.

  21. Hotspots of missense mutation identify neurodevelopmental disorder genes and functional domains.

    Nat. Neurosci., June 18, 2017

    Geisheker M.R., Heymann G., Wang T., Coe B.P., T. Turner, H. Stessman, et al.

  22. Pathogenic variants that alter protein code often disrupt splicing.

    Nat. Genet., May 31, 2017

    Soemedi R., Cygan K.J., Rhine C.L., Wang J., Bulacan C., Yang J., et al.

  23. Developmental trajectories for young children with 16p11.2 copy number variation.

    Am. J. Med. Genet. B. Neuropsychiatr. Genet., May 31, 2017

    R. Bernier, Hudac C.M., Chen Q., Zeng C., Wallace A.S., Gerdts J., et al.

  24. Arbaclofen in children and adolescents with autism spectrum disorder: A randomized, controlled, phase 2 trial.

    Neuropsychopharmacology, May 31, 2017

    J. Veenstra-VanderWeele, E. Cook, B. King, Zarevics P., Cherubini M., K. Walton-Bowen, et al.

  25. Identification of developmental and behavioral markers associated with genetic abnormalities in autism spectrum disorder.

    Am. J. Psychiatry, May 31, 2017

    S. Bishop, Farmer C., Bal V., E. Robinson, A. Willsey, D. Werling, et al.

  26. Exploring the heterogeneity of neural social indices for genetically distinct etiologies of autism.

    J. Neurodev. Disord., May 25, 2017

    Hudac C.M., H. Stessman, DesChamps T.D., Kresse A., Faja S., Neuhaus E., et al.

  27. De novo indels within introns contribute to ASD incidence.

    bioRxiv, May 24, 2017

    Munoz A., Yamrom B., Lee Y., Andrews P., Marks S., Lin K., et al.

  28. Predictors of inpatient psychiatric hospitalization for children and adolescents with autism spectrum disorder.

    J. Autism Dev. Disord., May 22, 2017

    Righi G., Benevides J., Mazefsky C., M. Siegel, S. Sheinkopf, E. Morrow, et al.

  29. Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.

    Mol. Autism, May 21, 2017

    Autism Spectrum Disorders Working Group of the Psychiatric Genomics Consortium.

  30. Disruption of melatonin synthesis is associated with impaired 14-3-3 and miR-451 levels in patients with autism spectrum disorders.

    Sci. Rep., May 17, 2017

    Pagan C., Goubran-Botros H., Delorme R., Benabou M., Lemiere N., Murray K., et al.

  31. Oxytocin under opioid antagonism leads to supralinear enhancement of social attention.

    Proc. Natl. Acad. Sci., May 15, 2017

    Dal Monte O., Piva M., Anderson K.M., Tringides M., Holmes A.J., and S. Chang

  32. High-risk autism spectrum disorder Utah pedigrees: a novel shared genomic segments analysis.

    bioRxiv, May 9, 2017

    Darlington T., Bilder D., Morgan J., Jerominski L., Rajamanickam V., Sargent R., et al.

  33. Delta rhythmicity is a reliable EEG biomarker in Angelman syndrome: A parallel mouse and human analysis.

    J. Neurodev. Disord., May 7, 2017

    Sidorov M.S., Deck G.M., Dolatshahi M., Thibert R.L., Bird L.M., Chu C.J., et al.

  34. Shank is a dose-dependent regulator of Cav1 calcium current and CREB target expression.

    Elife, May 5, 2017

    Pym E., Sasidharan N., Thompson-Peer K.L., Simon D.J., Anselmo A., Sadreyev R., et al.

  35. De novo loss of function mutations in KIAA2022 are associated with epilepsy and neurodevelopmental delay in females.

    Clin. Genet., April 30, 2017

    Webster R., Cho M.T., Retterer K., Millan F., Nowak C., Douglas J., et al.

  36. The placental interleukin-6 signaling controls fetal brain development and behavior.

    Brain Behav. Immun., April 30, 2017

    Wu W.L., Hsiao E.Y., Yan Z., S. Mazmanian, and P. Patterson

  37. CHD8 mutation leads to autistic-like behaviors and impaired striatal circuits.

    Cell Rep., April 10, 2017

    Platt R.J., Zhou Y., Slaymaker I.M., Shetty A.S., Weisbach N.R., Kim J.A., et al.

  38. Neurogenetic analysis of childhood disintegrative disorder.

    Mol. Autism, April 3, 2017

    A. Gupta, Westphal A., Yang D.Y.J., Sullivan C.A.W., Eilbott J., Zaidi S., et al.

  39. De novo variants in SNAP25 cause an early-onset developmental and epileptic encephalopathy.

    Genet. Med., March 31, 2017

    Klöckner C., Sticht H., Zacher P., Popp B., Babcock H.E., Bakker D.P., et al.

  40. Hyperactivity and male-specific sleep deficits in the 16p11.2 deletion mouse model of autism.

    Autism Res., March 31, 2017

    Angelakos C.C., Watson A.J., W. O'Brien, Krainock K.S., Nickl-Jockschat T., and T. Abel

  41. Auditory processing in noise is associated with complex patterns of disrupted functional connectivity in autism spectrum disorder.

    Autism Res., March 31, 2017

    Mamashli F., Khan S., Bharadwaj H., Michmizos K., Ganesan S., Garel K.A., et al.

  42. Targeted sequencing identifies 91 neurodevelopmental-disorder risk genes with autism and developmental-disability biases.

    Nat. Genet., March 31, 2017

    H. Stessman, Xiong B., Coe B.P., Wang T., Hoekzema K., Fenckova M., et al.

  43. Refining the role of de novo protein-truncating variants in neurodevelopmental disorders by using population reference samples.

    Nat. Genet., March 31, 2017

    Kosmicki J.A., K. Samocha, Howrigan D.P., S. Sanders, Slowikowski K., Lek M., et al.

  44. Striatal cholinergic interneurons modulate spike-timing in striosomes and matrix by an amphetamine-sensitive mechanism.

    Front. Neuroanat., March 20, 2017

    Crittenden J.R., Lacey C.J., Weng F.J., Garrison C.E., Gibson D.J., Lin Y., et al.

  45. Diverse non-genetic, allele-specific expression effects shape genetic architecture at the cellular level in the mammalian brain.

    Neuron, March 7, 2017

    Huang W.C., Ferris E., Cheng T., Hörndli C.S., Gleason K., Tamminga C., et al.

  46. Defining the diverse spectrum of inversions, complex structural variation, and chromothripsis in the morbid human genome.

    Genome Biol., March 5, 2017

    Collins R.L., Brand H., Redin C.E., Hanscom C., Antolik C., Stone M.R., et al.

  47. Neural circuitry at age 6 months associated with later repetitive behavior and sensory responsiveness in autism.

    Mol. Autism, March 3, 2017

    Wolff J.J., Swanson M.R., J. Elison, Gerig G., Pruett J.R. Jr., Styner M.A., et al.

  48. RNA sequencing of transformed lymphoblastoid cells from siblings discordant for autism spectrum disorders reveals transcriptomic and functional alterations: Evidence for sex-specific effects.

    Autism Res., March 1, 2017

    Tylee D.S., Espinoza A.J., Hess J.L., Tahir M.A., McCoy S.Y., Rim J.K., et al.

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