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Simons Foundation
Simons Foundation

Autism Research Initiative (SFARI)

  • Funding

    Explore open funding opportunities for autism research.

    Funding Opportunities

    Early Career Awards

    • Fellows to Faculty Award
    • Shenoy Undergraduate Research Fellowship in Neuroscience (SURFiN)

    Investigator Awards

    • New Ideas

    Symposia & Travel Awards

    • Conferences & Courses Award

    Shared Programs

    • Pivot Fellowship
    • Simons Society of Fellows

    Resource for Applying

    • Open Funding Opportunities
    • Policies & Procedures
    • Instructional Videos
    • Past Funded Work
  • Supported Work

    SFARI has supported over 750 investigators studying autism-related research.

    Research Highlights

    Research

    • SFARI Investigators
    • Funded Projects
    • Publications

    Data Access & Tools

    • SFARI Base
    • SFARI Gene
    • SFARI Genomes Browser

    Centers & Initiatives

    • Simons Center for the Social Brain
    • Simons Initiative for the Developing Brain

    Collaborations & Consortia

    • SFARI Sex Differences
    • Autism Rat Models Consortium
  • Resources

    Access data, biospecimens and participant cohorts through SFARI Base.

    SFARI Base

    Cohorts & Tissue Banks

    • SPARK
    • Simons Searchlight
    • Simons Simplex Collection
    • Autism BrainNet
    • Autism Inpatient Collection

    Other Resources

    • Animal Models
    • Biospecimens
    • Research Match

    Data Access & Tools

    • SFARI Base
    • SFARI Gene
    • SFARI Genomes Browser
    • Genotypes & Phenotypes in Families
  • News

    See the latest news and updates from SFARI.

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    SFARI’s mission is to advance the basic science of autism and related neurodevelopmental disorders.

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Autism Research Initiative (SFARI) Autism Rat Models Consortium

Autism Rat Models Consortium: Publications

From ARC

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  1. Multimodal pathways to joint attention in infants with a familial history of autism.

    Dev. Cogn. Neurosci., December 1, 2023

    Smith L.M., Yurkovic-Harding J., and Carver L.J.

  2. Characterizing subdomains of insistence on sameness in autistic youth.

    Autism Res., December 1, 2023

    Spackman E., Smillie L.D., T. Frazier, A. Hardan, and Uljarević M.

  3. Endogenous noise of neocortical neurons correlates with atypical sensory response variability in the Fmr1-/y mouse model of autism

    Nat. Commun., November 30, 2023

    Bhaskaran A.A., Gauvrit T., Vyas Y., Bony G., Ginger M., and A. Frick

  4. Copy-number variants and polygenic risk for intelligence confer risk for autism spectrum disorder irrespective of their effects on cognitive ability.

    medRxiv, November 29, 2023

    Schmilovich Z., Bourque V.R., Douard E., Huguet G., Poulain C., Ross J.P., Alipour P., Castonguay C.-É., Younis N., Jean-Louis M., Saci Z., Pausova Z., Paus T., Schuman G., Porteous D., Davies G., Redmond P., Harris S.E., Deary I.J., Whalley H., Hayward C., Dion P.A., Jacquemont S., Rouleau G.A.

  5. Single-cell long-read sequencing in human cerebral organoids uncovers cell-type-specific and autism-associated exons.

    Cell Rep., November 28, 2023

    Yang Y., Yang R., Kang B., Qian S., He X., and X. Zhang

  6. The phenotypic variability of 16p11.2 distal BP2-BP3 deletion in a transgenerational family and in neurodevelopmentally ascertained samples.

    J. Med. Genet., November 27, 2023

    Woodbury-Smith M., D'Abate L., Stavropoulos D.J., Howe J., Drmic I., Hoang N., et al.

  7. Genetically predicted causal associations between periodontitis and psychiatric disorders.

    BMJ Ment. Health, November 22, 2023

    Tong S., Lyu Y., Huang W., Zeng R., Jiang R., Lian Q., et al.

  8. Genomic data resources of the Brain Somatic Mosaicism Network for neuropsychiatric diseases.

    Sci. Data, November 20, 2023

    Garrison M.A., Jang Y., Bae T., Cherskov A., Emery S.B., Fasching L., Jones A., Moldovan J.B., Molitor C., Pochareddy S., Peters M.A., Shin J.H., Wang Y., Yang X., Akbarian S., Chess A., Gage F.H., J. Gleeson, Kidd J.M., McConnell M., Mills R.E., Moran J.V., Park P.J., N. Sestan, Urban A.E., F. Vaccarino, et al.

  9. Hyperthermia elevates brain temperature and improves behavioural signs in animal models of autism spectrum disorder.

    Mol. Autism, November 15, 2023

    Lopez-Rodriguez A.B., Murray C.L., Kealy J., Towns C., Roche A., Nazmi A., et al.

  10. Genetic ablation of GIGYF1, associated with autism, causes behavioral and neurodevelopmental defects in zebrafish and mice.

    Biol. Psychiatry, November 15, 2023

    Ding Z., Huang G., Wang T., Duan W., Jia H., Yang Z., et al.

  11. Cre-dependent massively parallel reporter assay allows for cell-type specific assessment of the functional effects of genetic variants in vivo.

    Commun. Biol., November 13, 2023

    Lagunas Jr. T., Plassmeyer S.P., Fischer A.D., Friedman R.Z., Rieger M.A., Selmanovic D., et al.

  12. Peripheral temperature dysregulation associated with functionally altered NaV1.8 channels.

    Pflugers Arch., November 1, 2023

    Loose S., Lischka A., Kuehs S., Nau C., S. Heinemann, Kurth I., et al.

  13. Remote vs. In-person Schooling during the COVID-19 Pandemic and Internalizing Symptoms among Children on the Autism Spectrum.

    Res. Autism Spectr. Disord., November 1, 2023

    Courreges A., Kouros C.D., Ekas N.V., and Levy S.

  14. Examining treatment outcomes across contexts: How do child baseline characteristics impact measurement of treatment response?

    J. Autism Dev. Disord., November 1, 2023

    Grzadzinski R., Jatkar A., Donovan K., Truong K., Holbrook A., C. Lord, et al.

  15. DeepGAMI: deep biologically guided auxiliary learning for multimodal integration and imputation to improve genotype-phenotype prediction.

    Genome Med., October 31, 2023

    Chandrashekar P.B., Alatkar S., Wang J., Hoffman G.E., He C., Jin T., et al.

  16. Deficits in integrative NMDA receptors caused by Grin1 disruption can be rescued in adulthood.

    Neuropsychopharmacology, October 31, 2023

    Venkatesan S., Binko M.A., Mielnik C.A., A. Ramsey, and Lambe E.K.

  17. Robust hierarchically organized whole-brain patterns of dysconnectivity in schizophrenia spectrum disorders observed after personalized intrinsic network topography.

    Hum. Brain Mapp., October 15, 2023

    Dickie E.W., Shahab S., Hawco C., Miranda D., Herman G., Argyelan M., et al.

  18. Long COVID-19 syndrome associated with Omicron XBB.1.5 infection: a case report.

    Mem. Inst. Oswaldo Cruz, October 13, 2023

    Espíndola O., Resende P.C., Guaraldo L., Calvet G.A., Fuller T.L., Penetra S.L.S., et al.

  19. Age-related changes in neural responses to sensory stimulation in autism: a cross-sectional study.

    Mol. Autism, October 11, 2023

    Cekar M.E., Cummings K.K., Bookheimer S.Y., Dapretto M., and Green S.

  20. Primary complex motor stereotypies are associated with de novo damaging DNA coding mutations that identify KDM5B as a risk gene.

    PLoS One, October 3, 2023

    T. Fernandez, Williams Z., Kline T., Rajendran S., Augustine F., Wright N., et al.

  21. Identifying crossovers and shared genetic material in whole genome sequencing data from families.

    Genome Res., October 2, 2023

    Paskov K., Chrisman B., Stockham N., Washington P.Y., Dunlap K., Jung J.-Y., et al.

  22. Epilepsy-associated SCN2A (NAV1.2) variants exhibit diverse and complex functional properties.

    J. Gen. Physiol., October 2, 2023

    Thompson C.H., Potet F., Abramova T.V., DeKeyser J.M., Ghabra N.F., Vanoye C.G., et al.

  23. Mutations in genes related to myocyte contraction and ventricular septum development in non-syndromic tetralogy of Fallot.

    Front. Cardiovasc. Med., September 28, 2023

    Harvey D.C., Verma R., Sedaghat B., Hjelm B.E., Morton S.U., Seidman J.G., et al.

  24. Mutations in genes related to myocyte contraction and ventricular septum development in non-syndromic tetralogy of Fallot.

    Front. Cardiovasc. Med., September 28, 2023

    Harvey D.C., Verma R., Sedaghat B., Hjelm B.E., Morton S.U., Seidman J.G., et al.

  25. Developing a measure of key adult outcomes in adults with developmental disabilities: Conceptual model and item generation of the REALS (Relationships, Employment, Autonomy, and Life Satisfaction).

    PLoS Comput. Biol., September 25, 2023

    Vacher J., Launay C., Mamassian P., and R. Coen-Cagli

  26. Parental tuning of language input to autistic and nonspectrum children.

    Front. Psychol., September 23, 2023

    He A.X., Luyster R.J., and Arunachalam S.

  27. Rare variation in noncoding regions with evolutionary signatures contributes to autism spectrum disorder risk.

    medRxiv, September 22, 2023

    Shin T., Song J.H.T., Kosicki M., Kenny C., Beck S.G., Kelley L., et al.

  28. Single cell analysis of dup15q syndrome reveals developmental and postnatal molecular changes in autism.

    bioRxiv, September 22, 2023

    Perez Y., Velmeshev D., Wang L., White M., Siebert C., Baltazar J., et al.

  29. Benchmarking of local genetic correlation estimation methods using summary statistics from genome-wide association studies

    Brief Bioinform., September 22, 2023

    Zhang C., Zhang Y., Zhang Y., and Zhao H.

  30. Increased rates of chronic physical health conditions across all organ systems in autistic adolescents and adults.

    Mol. Autism, September 20, 2023

    Ward J.H., Weir E., Allison C., and S. Baron-Cohen

  31. Phenotype and genetic analysis of data collected within the first year of NeuroDev.

    Neuron, September 20, 2023

    Kipkemoi P., Kim H.A., Christ B., O’Heir E., Allen J., Austin-Tse C., et al.

  32. Community providers' reported use of treatment practices in the United States.

    Front. Psychiatry, September 18, 2023

    Drahota A., Sridhar A., Moskowitz L.J., Kerns C.M., L. Soorya, Wainer A., et al.

  33. Accelerated longitudinal weight gain among infants with in utero COVID-19 exposure.

    J. Clin. Endocrinol. Metab., September 18, 2023

    Ockene M.W., Russo S.C., Lee H., Monthé-Drèze C., Stanley T.L., Ma I.L., et al.

  34. Classification of missense variants in the N-methyl-d-aspartate receptor GRIN gene family as gain- or loss-of-function.

    Hum. Mol. Genet., September 16, 2023

    Myers S.J., Yuan H., Perszyk R.E., Zhang J., Khan S., Nocilla K.A., et al.

  35. Single-cell brain organoid screening identifies developmental defects in autism.

    Nature, September 13, 2023

    Li C., Fleck J.S., Martins-Costa C., Burkard T.R., Themann J., Stuempflen M., et al.

  36. SnapShot: Reporting practices for publishing results with human PSCs and tissue stem cells.

    Stem Cell Reports, September 12, 2023

    ISSCR Task Force for Basic Research Standards

  37. The relationship between augmentative and alternative communication use by pediatric psychiatric inpatients with autism spectrum disorder and interfering behaviors.

    Am. J. Speech Lang. Pathol., September 11, 2023

    Clarke K.A., M. Siegel, and Williams D.L.

  38. Subcortical brain alterations in carriers of genomic copy number variants.

    Am. J. Psychiatry, September 1, 2023

    Kumar K., Modenato C., Moreau C., Ching C.R.K., Harvey A., Martin-Brevet S., Huguet G., Jean-Louis M., Douard E., Martin C.O., Younis N., Tamer P., Maillard A.M., Rodriguez-Herreros B., Pain A., Richetin S., 16p11.2 European Consortium, Simons Searchlight Consortium, Kushan L., Isaev D., Alpert K., Ragothaman A., Turner J.A., Wang L., Ho T.C., Schmaal L., Silva A.I., van den Bree M.B.M., Linden D.E.J., Owen M.J., Hall J., S. Lippé, Dumas G., Draganski B., Gutman B.A., Sønderby I.E., Andreassen O.A., Schultz L., Almasy L., Glahn D.C., C. Bearden, and Thompson P.M., Jacquemont S.

  39. Three generation families: Analysis of de novo variants in autism.

    Eur. J. Hum. Genet., September 1, 2023

    Costa C.I.S., da Silva Campos G., da Silva Montenegro E.M., Wang J.Y.T., Scliar M., Monfardini F., et al.

  40. Discovery of eQTL alleles associated with autism spectrum disorder: A case-control study.

    J. Autism Dev. Disord., September 1, 2023

    Hickman A.R., Selee B., Pauly R., Husain B., Hang Y., and Feltus F.A.

  41. The autism impact measure (AIM): Meaningful change thresholds and core symptom changes over one year from an online survey in the U.S.

    J. Autism Dev. Disord., September 1, 2023

    Silkey M., Durán-Pacheco G., Johnson M., Liu C., Clinch S., Law K., et al.

  42. Examining the latent structure and correlates of sensory reactivity in autism: a multi-site integrative data analysis by the autism sensory research consortium.

    Mol. Autism, August 28, 2023

    Williams Z.J., Schaaf R., Ausderau K.K., Baranek G.T., Barrett D.J., Cascio C.J., Dumont R.L., Eyoh E.E., Failla M.D., Feldman J.I., Green H.L., Green S.A., He J.L., Kaplan-Kahn E.A., Keçeli-Kaysılı B., MacLennan K., Mailloux Z., Marco E.J., Mash L.E., McKernan E.P., S. Molholm, S. Mostofsky, Puts N.A.J., C. Robertson, et al.

  43. Behavioral parent training engagement among young children with autism spectrum disorder.

    Behav. Ther., August 19, 2023

    Ros-Demarize R., Klein J., and L. Carpenter

  44. Protocol for the development of joint attention-based subclassification of autism spectrum disorder and validation using multi-modal data.

    BMC Psychiatry, August 15, 2023

    Ko C., Kang S., Hong S.B., and Park Y.R.

  45. Modeling idiopathic autism in forebrain organoids reveals an imbalance of excitatory cortical neuron subtypes during early neurogenesis.

    Nat. Neurosci., August 10, 2023

    Jourdon A., Wu F., Mariani J., Capauto D., Norton S., Tomasini L., et al.

  46. Genetic control of mRNA splicing as a potential mechanism for incomplete penetrance of rare coding variants.

    Genetics, August 9, 2023

    Einson J., et al.

  47. Genetic control of mRNA splicing as a potential mechanism for incomplete penetrance of rare coding variants.

    Genetics, August 9, 2023

    Einson J., Glinos D., Boerwinkle E., Castaldi P., Darbar D., de Andrade M., et al.

  48. FOXP1 orchestrates neurogenesis in human cortical basal radial glial cells.

    PLoS Biol., August 4, 2023

    Park S.H.E, Kulkarni A., and G. Konopka

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