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Simons Foundation
Simons Foundation

Autism Research Initiative (SFARI)

  • Funding

    Explore open funding opportunities for autism research.

    Funding Opportunities

    Early Career Awards

    • Fellows to Faculty Award
    • Shenoy Undergraduate Research Fellowship in Neuroscience (SURFiN)

    Investigator Awards

    • New Ideas

    Symposia & Travel Awards

    • Conferences & Courses Award

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    • Pivot Fellowship
    • Simons Society of Fellows

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    • Open Funding Opportunities
    • Policies & Procedures
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    • Past Funded Work
  • Supported Work

    SFARI has supported over 750 investigators studying autism-related research.

    Research Highlights

    Research

    • SFARI Investigators
    • Funded Projects
    • Publications

    Data Access & Tools

    • SFARI Base
    • SFARI Gene
    • SFARI Genomes Browser

    Centers & Initiatives

    • Simons Center for the Social Brain
    • Simons Initiative for the Developing Brain

    Collaborations & Consortia

    • SFARI Sex Differences
    • Autism Rat Models Consortium
  • Resources

    Access data, biospecimens and participant cohorts through SFARI Base.

    SFARI Base

    Cohorts & Tissue Banks

    • SPARK
    • Simons Searchlight
    • Simons Simplex Collection
    • Autism BrainNet
    • Autism Inpatient Collection

    Other Resources

    • Animal Models
    • Biospecimens
    • Research Match

    Data Access & Tools

    • SFARI Base
    • SFARI Gene
    • SFARI Genomes Browser
    • Genotypes & Phenotypes in Families
  • News

    See the latest news and updates from SFARI.

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    SFARI’s mission is to advance the basic science of autism and related neurodevelopmental disorders.

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Autism Research Initiative (SFARI) Autism Rat Models Consortium

Autism Rat Models Consortium: Publications

From ARC

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  1. Integrated gene analyses of de novo variants from 46,612 trios with autism and developmental disorders.

    Proc. Natl. Acad. Sci. U. S. A., November 15, 2022

    Wang T., Kim C.N., Bakken T.E., Gillentine M.A., Henning B., Mao Y., et al.

  2. CYFIP1 dosages exhibit divergent behavioral impact via diametric regulation of NMDA receptor complex translation in mouse models of psychiatric disorders.

    Biol. Psychiatry, November 15, 2022

    Kim N.-S., Ringeling F.R., Zhou Y., Nguyen H.N., Temme S.J., Lin Y.-T., et al.

  3. Gestationally-dependent immune organization at the maternal-fetal interface.

    Cell Rep., November 15, 2022

    Moore A.R., Gonzalez N.V., Plummer K.A., Mitchel O.R., Kaur H., Rivera M., et al.

  4. Sex-biasing influence of autism-associated Ube3a gene overdosage at connectomic, behavioral and transcriptomic levels.

    bioRxiv, November 11, 2022

    Montani C., Pagani M., De Guzman E., Balasco L., Alvino F.G., de Felice A., et al.

  5. Developmental disruption and restoration of brain synaptome architecture in the murine Pax6 neurodevelopmental disease model.

    Nat. Commun., November 11, 2022

    Tomas-Roca L., Qiu Z., Fransén E., Gokhale R., Bulovaite E., Price D.J., et al.

  6. Genomic architecture of autism from comprehensive whole-genome sequence annotation.

    Cell, November 10, 2022

    Trost B., Thiruvahindrapuram B., Chan A.J.S., Engchuan W., Higginbotham E.J., Howe J.L., et al.

  7. Mapping human social brain specialisation beyond the neuron using multimodal imaging in human infants.

    bioRxiv, November 9, 2022

    Siddiqui M., Pinti P., Brigadoi S., Lloyd-Fox S., Elwell C.E., M. Johnson, et al.

  8. Copy number variation and structural genomic findings in 116 cases of sudden unexplained death between 1 and 28 months of age.

    Adv. Genet. (Hoboken), November 7, 2022

    Brownstein C.A., Douard E., Haynes R.L., Koh H.Y., Haghighi A., Keywan C., et al.

  9. Broad transcriptomic dysregulation occurs across the cerebral cortex in ASD.

    Nature, November 2, 2022

    M. Gandal, Haney J.R., Wamsley B., Yap C.X., Parhami S., Emani P.S., et al.

  10. Similar rates of deleterious copy number variants in early-onset psychosis and autism spectrum disorder.

    Am. J. Psychiatry, November 1, 2022

    Brownstein C.A., Douard E., Mollon J., Smith R., Hojlo M.A., Das A., Goldman M., Garvey E., Cabral K., Li J., Bowen J., Rao A.S., Genetti C., Carroll D., Knowles E.E.M., Deaso E., Agrawal P.B., Beggs A.H., D'Angelo E., Almasy L., Alexander-Bloch A., Saci Z., Moreau C.A., Huguet G., Deo A.J., Jacquemont S., Glahn D.C., Gonzalez-Heydrich J.

  11. Patterns of sleep disturbances and associations with depressive symptoms in autistic young adults.

    Autism Res., November 1, 2022

    Lampinen L.A., Zheng S., Taylor J.L., Adams R.E., Pezzimenti F., Asarnow L.D., et al.

  12. Associations between co-occurring conditions and age of autism diagnosis: Implications for mental health training and adult autism research.

    Autism Res., November 1, 2022

    Jadav N. and Bal V.H.

  13. Sensory processing in 16p11.2 deletion and 16p11.2 duplication.

    Autism Res., November 1, 2022

    Smith H., Lane C., Al-Jawahiri R., and Freeth M.

  14. Ketamine induces multiple individually distinct whole-brain functional connectivity signatures.

    bioRxiv, November 1, 2022

    Moujaes F., Ji J.L., Rahmati M., Burt J., Schleifer C.H., Adkinson B., et al.

  15. Generation of DNA methylation signatures and classification of variants in rare neurodevelopmental disorders using epigencentral.

    Curr. Protoc., November 1, 2022

    Awamleh Z., Goodman S., Kallurkar P., Wu W., Lu K., Choufani S., et al.

  16. Intact amphetamine-induced behavioral sensitization in mice with increased or decreased neuronal glutamate transporter SLC1A1/EAAT3.

    Neurochem. Int., November 1, 2022

    Chohan M.O., Yueh H., Fein H., Kopelman J.M., Ahmari S.E., and J. Veenstra-VanderWeele

  17. Co-occurring ADHD symptoms in autistic adults are associated with less independence in daily living activities and lower subjective quality of life.

    Autism, November 1, 2022

    Yerys B.E., McQuaid G.A., Lee N.R., and Wallace G.L.

  18. Non-coding de novo mutations in chromatin interactions are implicated in autism spectrum disorder.

    Mol. Psychiatry, November 1, 2022

    Kim I.B., Lee T., Lee J., Kim J., Lee S., Koh I.G., et al.

  19. Behavioral responses to fevers and other medical events in children with and without ASD.

    Autism Res., November 1, 2022

    Byrne K., Zheng S., S. Bishop, Boucher J., Ghods S., S. Kim, et al.

  20. Statistical and functional convergence of common and rare genetic influences on autism at chromosome 16p.

    Nat. Genet., November 1, 2022

    Weiner D.J., Ling E., Erdin S., Tai D.J.C., Yadav R., Grove J., et al.

  21. Genome-wide rare variant score associates with morphological subtypes of autism spectrum disorder.

    Nat. Commun., October 29, 2022

    Chan A.J.S., Engchuan W., Reuter M.S., Wang Z., Thiruvahindrapuram B., Trost B., et al.

  22. Clinical characteristics of youth with autism or developmental disability during inpatient psychiatric admission.

    J. Clin. Med., October 27, 2022

    Neuhaus E., Osuna A., Tagavi D.M., Shah-Hosseini S., Simmons S., J. Gerdts, et al.

  23. In vivo proximity ligation reveals endogenous candidate interactors of neurexin's intracellular domain.

    bioRxiv, October 22, 2022

    Profes M.S., Tiroumalechetty A., Patel N., Lauar S.S., Sidoli S., and P. Kurshan

  24. Rhesus monkey sociality is stable across time and linked to variation in the initiation but not receipt of prosocial behavior.

    Am. J. Primatol., October 21, 2022

    Talbot C.F., Madrid J.E., Del Rosso L.A., Capitanio J.P., Garner J.P., and K. Parker

  25. Associations between executive functioning, challenging behavior, and quality of life in children and adolescents with and without neurodevelopmental conditions.

    Front. Psychol., October 20, 2022

    T. Frazier, Crowley E., Shih A., Vasudevan V., Karpur A., Uljarevic M., et al.

  26. Hyperexcitable and immature-like neuronal activity in the auditory cortex of adult rats lacking the language-linked CNTNAP2 gene.

    Cereb. Cortex, October 20, 2022

    Scott K.E., Mann R.S., Schormans A.L., S. Schmid, and Allman B.L.

  27. Can the "female protective effect" liability threshold model explain sex differences in autism spectrum disorder?

    Neuron, October 19, 2022

    J. Dougherty, N. Marrus, Maloney S.E., Yip B., S. Sandin, T. Turner, et al.

  28. Wide spectrum of neuronal and network phenotypes in human stem cell-derived excitatory neurons with Rett syndrome-associated MECP2 mutations.

    Transl. Psychiatry, October 18, 2022

    Mok R.S.F., Zhang W., Sheikh T.I., Pradeepan K., Fernandes I.R., DeJong L.C., et al.

  29. Cerebellar atypicalities in autism?

    Biol. Psychiatry, October 15, 2022

    Laidi C., Floris D.L., Tillmann J., Elandaloussi Y., Zabihi M., Charman T., et al.

  30. Stepped-care cognitive behavioral therapy in children on the autism spectrum with co-occurring anxiety.

    J. Autism Dev. Disord., October 14, 2022

    Storch E.A., Schneider S.C., Olsen S.M., Ramirez A.C., Berry L.N., R. Goin-Kochel, et al.

  31. Targeted de novo phasing and long-range assembly by template mutagenesis.

    Nucleic Acids Res., October 14, 2022

    Li S., Park S., Ye C., Danyko C., Wroten M., Andrews P., et al.

  32. Predictive functional, statistical and structural analysis of CSNK2A1 and CSNK2B variants linked to neurodevelopmental diseases.

    Front. Mol. Biosci., October 13, 2022

    Unni P., Friend J., Weinberg J., Okur V., Hochscherf J., and Dominguez I.

  33. Exploring the symptom profiles of intolerance of uncertainty in autistic children.

    J. Autism Dev. Disord., October 13, 2022

    Keefer A., Singh V., Jang Y.S., Alon L., Surmacz M., Holingue C., et al.

  34. Repeat polymorphisms in non-coding DNA underlie top genetic risk loci for glaucoma and colorectal cancer.

    medRxiv, October 13, 2022

    Mukamel R.E., Handsaker R.E., Sherman M.A., Barton A.R., Hujoel M.L.A., S. McCarroll, et al.

  35. Precision psychiatry requires disentangling disorder-specific variation: The case of ASD.

    Clin. Transl. Med., October 12, 2022

    Aglinskas A. and S. Anzellotti

  36. A randomized controlled trial of everolimus for neurocognitive symptoms in PTEN hamartoma tumor syndrome.

    Hum. Mol. Genet., October 10, 2022

    Srivastava S., Jo B., Zhang B., T. Frazier, Gallagher A.S., Peck F., et al.

  37. ASD gene Bcl11a regulates subcellular RNA localization, associative circuitry, and social behavior.

    bioRxiv, October 7, 2022

    Durak O., Kim J.-Y., Tillman D.E., Itoh Y., Wettstein M.R., Greig L.C., et al.

  38. KnockoffTrio: A knockoff framework for the identification of putative causal variants in genome-wide association studies with trio design.

    Am. J. Hum. Genet., October 6, 2022

    Yang Y., Wang C., Liu L., J. Buxbaum, He Z., and Ionita-Laza I.

  39. Tissue- and cell-type-specific molecular and functional signatures of 16p11.2 reciprocal genomic disorder across mouse brain and human neuronal models.

    Am. J. Hum. Genet., October 6, 2022

    Tai D.J.C., Razaz P., Erdin S., Gao D., Wang J., Nuttle X., et al.

  40. Exclusion of females in autism research: Empirical evidence for a "leaky" recruitment-to-research pipeline.

    Autism Res., October 3, 2022

    D'Mello A.M., Frosch I.R., Li C.E., Cardinaux A.L., and J. Gabrieli

  41. GIGYF1 disruption associates with autism and impaired IGF-1R signaling.

    J. Clin. Invest., October 3, 2022

    Chen G., Yu B., Tan S., Tan J., Jia X., Zhang Q., et al.

  42. Oxytocin enhances basolateral amygdala activation and functional connectivity while processing emotional faces: Preliminary findings in autistic vs non-autistic women.

    Soc. Cogn. Affect. Neurosci., October 3, 2022

    Procyshyn T.L., M. Lombardo, Lai M.-C., Jassim N., Auyeung B., Crockford S.K., et al.

  43. Investigating the contributions of circadian pathway and insomnia risk genes to autism and sleep disturbances.

    Transl. Psychiatry, October 3, 2022

    Tesfaye R., Huguet G., Schmilovich Z., Renne T., Loum M.A., Douard E., et al.

  44. QuNex — An integrative platform for reproducible neuroimaging analytics.

    bioRxiv, October 2, 2022

    Ji J.L., Demšar J., Fonteneau C., Tamayo Z., Pan L., Kraljič A., et al.

  45. Combinations of genes at the 16p11.2 and 22q11.2 CNVs contribute to neurobehavioral traits.

    medRxiv, October 1, 2022

    Vysotskiy M., Autism Working Group of the Psychiatric Genomics Consortium, Bipolar Disorder Working Group of the Psychiatric Genomics Consortium, Schizophrenia Working Group of the Psychiatric Genomics Consortium, and L. Weiss

  46. Reexamining empathy in autism: Empathic disequilibrium as a novel predictor of autism diagnosis and autistic traits.

    Autism Res., October 1, 2022

    Shalev I., V. Warrier, Greenberg D.M., Smith P., Allison C., S. Baron-Cohen, et al.

  47. Social attention in anorexia nervosa and autism spectrum disorder: Role of social motivation.

    Autism, October 1, 2022

    Kerr-Gaffney J., E. Jones, Mason L., Hayward H., D. Murphy, E. Loth, et al.

  48. What are you looking at? Gaze following with and without target objects in asd and typical development.

    Autism, October 1, 2022

    Thorup E., Nyström P., Bölte S., and Falck-Ytter T.

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