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Simons Foundation
Simons Foundation

Autism Research Initiative (SFARI)

  • Funding

    Explore open funding opportunities for autism research.

    Funding Opportunities

    Early Career Awards

    • Fellows to Faculty Award
    • Shenoy Undergraduate Research Fellowship in Neuroscience (SURFiN)

    Investigator Awards

    • New Ideas

    Symposia & Travel Awards

    • Conferences & Courses Award

    Shared Programs

    • Pivot Fellowship
    • Simons Society of Fellows

    Resource for Applying

    • Open Funding Opportunities
    • Policies & Procedures
    • Instructional Videos
    • Past Funded Work
  • Supported Work

    SFARI has supported over 750 investigators studying autism-related research.

    Research Highlights

    Research

    • SFARI Investigators
    • Funded Projects
    • Publications

    Data Access & Tools

    • SFARI Base
    • SFARI Gene
    • SFARI Genomes Browser

    Centers & Initiatives

    • Simons Center for the Social Brain
    • Simons Initiative for the Developing Brain

    Collaborations & Consortia

    • SFARI Sex Differences
    • Autism Rat Models Consortium
  • Resources

    Access data, biospecimens and participant cohorts through SFARI Base.

    SFARI Base

    Cohorts & Tissue Banks

    • SPARK
    • Simons Searchlight
    • Simons Simplex Collection
    • Autism BrainNet
    • Autism Inpatient Collection

    Other Resources

    • Animal Models
    • Biospecimens
    • Research Match

    Data Access & Tools

    • SFARI Base
    • SFARI Gene
    • SFARI Genomes Browser
    • Genotypes & Phenotypes in Families
  • News

    See the latest news and updates from SFARI.

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    SFARI’s mission is to advance the basic science of autism and related neurodevelopmental disorders.

    About SFARI

    About SFARI

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A circular, abstract pattern with irregular, jagged white lines and shapes on a light gray background, resembling a textured surface or cracked ground.
Autism Research Initiative (SFARI) Research

Research: Funded Projects

SFARI supports more than 250 investigators each year and has committed over $525 million to autism research since 2006.

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Results

  1. Functionally characterizing noncoding regulatory mutations in the Simons Simplex Collection

    Funded Work
    SFARI has been a leader in using whole-genome sequencing (WGS) to interrogate the genetic causes of autism spectrum disorder (ASD).
  2. Developing parent-friendly tools for assessing expressive language outcome measures in young children with autism

    Funded Work
    One of the most important objectives of autism spectrum disorder (ASD) interventions is to improve spoken communicative language skills.
  3. Exploring regulatory genomic variation in the developing human brain to understand autism

    Funded Work
    Despite advances in elucidating the genetic basis of autism, there remains uncertainty about the specific causal genes involved in pathogenesis and how their functions are neurodevelopmentally regulated.
  4. Parvalbumin down-regulation as a common pathophysiological mechanism in autism spectrum disorders

    Funded Work
    Although a strong genetic component is evident in the etiology of autism spectrum disorders (ASD), mutations in any given ‘ASD susceptibility gene’ account for less than 1% of …
  5. Maternal antibodies as early biomarkers for autism spectrum disorder

    Funded Work
    Autism spectrum disorder (ASD) is characterized by behavioral symptoms that become apparent in early childhood but that have lifelong debilitating effects.
  6. Identification of developmental subcortical vulnerabilities in autism spectrum disorder

    Funded Work
    Autism spectrum disorder (ASD) is a neurodevelopmental disorder that broadly impacts perceptual, cognitive, social and motor functions.
  7. Reconstructing the cellular history of developing neurons using molecular recordings

    Funded Work
    The widespread use of genome sequencing has provided the research community with an incredible, new opportunity to determine the root causes of autism by uncovering genes that are …
  8. Toward creating behavioral informatics for autism through rich and efficient audio processing

    Funded Work
    Shrikanth (Shri) Narayanan’s overall goal is to create capabilities in robust and context-aware audio processing.
  9. Characterization of predictive abilities in individuals with autism using web-based interception games

    Funded Work
    Despite progress in elucidating the genetic and neural underpinnings of autism spectrum disorder (ASD), clinical assessments are still the gold standard for diagnosing and evaluating outcomes.
  10. Disentangling autism heterogeneity through multivariate genetic analyses

    Funded Work
    Autism spectrum disorders (ASDs) are complex, heritable and highly heterogeneous neurodevelopmental conditions, where clinical symptoms often co-occur with other psychiatric conditions.
  11. Maximizing autism gene discovery by combining machine learning and single-cell expression data analyses

    Funded Work
    Thorough understanding of the genetic causes of autism spectrum disorder (ASD) is critical to improve clinical care and advance biomedical sciences.
  12. Mechanisms of complex genetic inheritance in autism

    Funded Work
    Investigations into the genetic basis of autism spectrum disorder (ASD) have focused on the opposite extremes of rare de novo mutations and common polygenic risk.
  13. Integrative analysis of common variation associated with autism

    Funded Work
    Common variation in aggregate contributes to a substantial proportion of risk for developing autism spectrum disorder (ASD).
  14. New mathematical approaches to dissect neuronal circuit alterations in Rett syndrome using EEG data

    Funded Work
    Electroencephalogram (EEG) assessments noninvasively detect electrical activity using electrodes easily attached to one’s scalp, providing a rich neural signal that captures many aggregate neural phenomena.
  15. SPARKing a global gene discovery effort in autism: Analysis of single nucleotide variants and indels

    Funded Work
    Autism spectrum disorder (ASD) is among the most highly heritable neuropsychiatric disorders, with a genetic architecture including significant contributions from both common and rare genetic variation.
  16. SPARKing a global gene discovery effort in ASD: Analysis of structural variation

    Funded Work
    The last several years have seen remarkable progress in the discovery of genetic variation that significantly influences the genetic risk of developing autism spectrum disorder (ASD).
  17. Cell type molecular neuropathology of the cerebellum in autism

    Funded Work
    Clinical and pathological studies of individuals diagnosed with autism spectrum disorder (ASD) have repeatedly implicated the cerebellum in ASD pathogenesis.
  18. Integrated copy number variant analysis of SPARK exomes

    Funded Work
    Sporadic point mutations and large copy number variants (CNVs) contribute significantly to the etiology of autism and currently account for approximately 10–30% of cases.
  19. Identifying EEG biomarkers of treatment outcome

    Funded Work
    Autism spectrum disorder (ASD) is a heterogeneous neurodevelopmental condition with core behaviors that include social challenges and repetitive and restricted behaviors.
  20. The role of glial CHD2 in homeostatic synaptic plasticity and autism

    Funded Work
    Autism spectrum disorders (ASDs) have a prevalence of 1.5 percent in the general population, with affected individuals characterized by varying levels of developmental, intellectual and behavioral impairments.
  21. Myelin integrity and plasticity in a neuroligin 3 mouse model of autism

    Funded Work
    Autism spectrum disorders (ASDs) are a broad spectrum of conditions characterized by impairments in social interactions and communication, as well as restricted and repetitive behaviors.
  22. Striatal circuit dysfunction in a mouse model of the autism risk gene CACNA1D

    Funded Work
    Autism spectrum disorders (ASDs) are a group of pervasive neurodevelopmental disorders affecting approximately 1 in 59 children born in the United States.
  23. Combining pivotal response treatment with intranasal oxytocin to improve social reciprocity in children with ASD

    Funded Work
    Denis Sukhodolsky and Kevin Pelphrey seek to develop more precise treatments for children with autism spectrum disorder (ASD), guided by their distinct neural profiles.
  24. Assessing experience-dependent visual responses as biomarkers of genetically defined autism spectrum disorders

    Funded Work
    Autism spectrum disorders (ASDs), thought to arise from interactions among multiple heterogeneous genetic and environmental factors, are typically not diagnosed until early childhood, following the onset of behavioral …
  25. Pathogenic gating pore current in autism

    Funded Work
    The voltage-gated sodium (Nav), calcium (Cav) and potassium (Kv) channels that generate action potentials in neurons are among the most frequent targets of de novo mutations that …
  26. Leveraging a high-throughput CRISPR screen to assess convergent neurogenesis phenotypes across autism risk genes

    Funded Work
    Gene discovery in autism spectrum disorders (ASD) has accelerated rapidly, resulting in an extensive list of reliably associated genes.
  27. Interactome perturbation screen to identity damaging de novo missense mutations in autism

    Funded Work
    Through the Simons Simplex Collection (SSC) and the Autism Sequencing Consortium (ASC) sequencing efforts, thousands of de novo coding mutations have been identified in individuals with autism spectrum …
  28. Analysis of UBE3A- and NHE6-mutant cells to determine social communication gene networks

    Funded Work
    Genetic research in autism has led to the discovery of a growing list of highly penetrant mutations that contribute to disease pathophysiology.
  29. Assessing sensory impairments and aberrant cortical circuit activity in Cntnap2 knockout mice

    Funded Work
    The cerebral cortex is the dominant structure of the mammalian brain, and it is widely affected in autism spectrum disorders (ASD), with impairments in sensory processing reflecting a …
  30. Identifying convergent cortical circuit impairments across multiple mouse models of autism

    Funded Work
    A major challenge to the investigation of cellular mechanisms underlying autism spectrum disorders (ASDs) is to identify convergent neural ‘signatures’ linking common cognitive and behavioral changes with the …
  31. Developmental origins of the female protective effect in autism

    Funded Work
    Autism spectrum disorders (ASD) have a strong male bias, as documented extensively in both epidemiological and genetic studies.
  32. Establishment of specific cortico-basal ganglia circuits by autism-linked protocadherins

    Funded Work
    Protocadherin 19 (PCDH19), PCDH10 and PCDH17 are homophilic cell adhesion molecules that belong to the δ2-protocadherin family.
  33. SSC-ASC Whole-Genome Sequencing Consortium (project 4): Functional analysis of mutations in untranslated regions

    Funded Work
    Whole-genome sequencing (WGS) now enables a survey of most of the genome and has resulted in the discovery of two orders of magnitude more de novo variants …
  34. Tracing abnormal cortical neuron developmental trajectories in a mouse model of 22q11.2 deletion syndrome

    Funded Work
    Abnormal assembly of neurons into circuits during corticogenesis is at the core of the behavioral deficits found in individuals with autism spectrum disorder (ASD).
  35. Assessment of involuntary eye movements as a measure of cognitive abilities in minimally verbal individuals with autism spectrum disorder

    Funded Work
    Children and adults with autism spectrum disorder (ASD) and little or no spoken language, labeled ‘minimally verbal’ (MV), often fail conventional assessments of cognitive abilities and are typically …
  36. Characterizing focal cortical dysplasias in individuals with autism spectrum disorders

    Funded Work
    Several postmortem studies of autism spectrum disorders (ASDs) have found cortical abnormalities consistent with focal cortical dysplasias (FCDs).
  37. Impact and mechanisms of paternal gonadal mosaicism on risk for autism

    Funded Work
    Joseph Gleeson proposes to identify mechanisms and origins of de novo mutations (DNMs), which make important contributions to the risk of autism spectrum disorder (ASD).
  38. Sensory circuit development in a zebrafish model of fragile X syndrome

    Funded Work
    Autism spectrum disorders (ASDs) have traditionally been thought of as primarily disorders of cognition.
  39. The neuroscience and genetic basis of twice exceptionality: A pilot study

    Funded Work
    Autism spectrum disorder (ASD), characterized by core challenges in socialization and restrictive and repetitive behaviors, has a complicated relationship with intellectual disability (ID), which is characterized by core …
  40. Gene regulatory control of prefrontal cortex development and evolution

    Funded Work
    The prefrontal cortex (PFC) is critical for social communication and the integration of the cognitive, affective and motivational domains.
  41. Sensory processing in autism — a multilevel approach

    Funded Work
    During early life, the auditory system normally undergoes tremendous development and plasticity; however, this typical maturation is perturbed in individuals with autism spectrum disorder (ASD).
  42. Foxp1-regulated cell-type specific contributions to striatal development in mice

    Funded Work
    Mutations in FOXP1 are among the most significant recurrent de novo mutations associated with autism spectrum disorder (ASD).
  43. The role of the PTCHD1-antisense long noncoding RNA in autism

    Funded Work
    Autism spectrum disorder (ASD) remains a medical enigma due to the many clinical forms, the rise in prevalence worldwide and the vast genetic heterogeneity involved.
  44. SSC-ASC Whole-Genome Sequencing Consortium (project 1): Association testing

    Funded Work
    The last decade has seen remarkable progress in gene discovery for autism spectrum disorder (ASD), catalyzed by exome sequencing of the 1.5 percent of the genome that …
  45. Translating drug discovery findings in zebrafish models of autism risk genes to mouse models

    Funded Work
    There is an urgent need to leverage the rapidly expanding list of autism spectrum disorder (ASD) risk genes to gain an actionable understanding of the biology of ASD …
  46. Exacerbation of Chd8+/- phenotypes with a suspected environmental risk factor

    Funded Work
    Genetic factors account for the bulk of autism risk, but environmental factors are also implicated in risk.
  47. Elucidation of the bidirectional role of microglia in fragile X syndrome

    Funded Work
    Fragile X syndrome (FXS) is a heritable disease caused by mutations in the fragile X mental retardation 1 gene (FMR1) and carries a high risk for autism spectrum …
  48. Exploring deficits in lineage-dependent neocortical circuit assembly in a mouse model of fragile X syndrome

    Funded Work
    Despite the fact that autism spectrum disorders (ASDs) are considered neurodevelopmental disorders, the precise links between early brain development abnormalities and later functional deficits remain largely unknown.
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