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Simons Foundation
Simons Foundation

Autism Research Initiative (SFARI)

  • Funding

    Explore open funding opportunities for autism research.

    Funding Opportunities

    Early Career Awards

    • Fellows to Faculty Award
    • Shenoy Undergraduate Research Fellowship in Neuroscience (SURFiN)

    Investigator Awards

    • New Ideas

    Symposia & Travel Awards

    • Conferences & Courses Award

    Shared Programs

    • Pivot Fellowship
    • Simons Society of Fellows

    Resource for Applying

    • Open Funding Opportunities
    • Policies & Procedures
    • Instructional Videos
    • Past Funded Work
  • Supported Work

    SFARI has supported over 750 investigators studying autism-related research.

    Research Highlights

    Research

    • SFARI Investigators
    • Funded Projects
    • Publications

    Data Access & Tools

    • SFARI Base
    • SFARI Gene

    Centers & Initiatives

    • Simons Center for the Social Brain
    • Simons Initiative for the Developing Brain

    Collaborations & Consortia

    • SFARI Sex Differences
    • Autism Rat Models Consortium
  • Resources

    Access data, biospecimens and participant cohorts through SFARI Base.

    SFARI Base

    Cohorts & Tissue Banks

    • SPARK
    • Simons Searchlight
    • Simons Simplex Collection
    • Autism BrainNet
    • Autism Inpatient Collection

    Other Resources

    • Animal Models
    • Biospecimens
    • Research Match

    Data Access & Tools

    • SFARI Base
    • SFARI Gene
    • SFARI Genomes Browser
    • Genotypes & Phenotypes in Families
  • News

    See the latest news and updates from SFARI.

    All News

    News

    • SFARI News
    • Research Highlights
    • Meeting & Workshop Reports
    • Funding News
  • About

    SFARI’s mission is to advance the basic science of autism and related neurodevelopmental disorders.

    About SFARI

    About SFARI

    • About
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Autism Research Initiative (SFARI) Research

Research: Funded Publications

Explore publications and preprints from SFARI-funded investigators and researchers using SFARI-supported data and resources.

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Results

  1. Autistic mothers' perinatal well-being and parenting styles.

    Autism, October 1, 2022

    Hampton S., Allison C., Aydin E., S. Baron-Cohen, and Holt R.

  2. The primary ciliary deficits in cerebellar Bergmann glia of the mouse model of fragile X syndrome.

    Cerebellum, October 1, 2022

    Lee B., Beuhler L., and H. Lee

  3. Mapping the time course of overt emotion dysregulation, self-injurious behavior, and aggression in psychiatrically hospitalized autistic youth: A naturalistic study.

    Autism Res., October 1, 2022

    Northrup J.B., M. Goodwin, Peura C.B., Chen Q., Taylor B.J., M. Siegel, et al.

  4. Genome-wide by environment interaction study of stressful life events and hospital-treated depression in the iPSYCH2012 sample.

    Biol. Psychiatry Glob. Open Sci., October 1, 2022

    Suppli N.P., Andersen K.K., Agerbo E., Rajagopal V.M., Appadurai V., Coleman J.R.I., et al.

  5. Prioritizing de novo autism risk variants with calibrated gene- and variant-scoring models.

    Hum. Genet., October 1, 2022

    Jiang Y., Urresti J., Pagel K.A., Pramod A.B., L. Iakoucheva, and Radivojac P.

  6. High body mass polygenic risk in mothers enhances de novo functional mutations in epigenetic and microtubule gene pathways in their offspring with autism spectrum disorder.

    Research Square, September 28, 2022

    Lohman B., Shabalin A.A., Farrell A., G. Marth, A. Docherty, and H. Coon

  7. Dopaminergic gene dosage reveals distinct biological partitions between autism and developmental delay as revealed by complex network analysis and machine learning approaches.

    J. Pers. Med., September 25, 2022

    Santos A., Caramelo F., Melo J.B., and Castelo-Branco M.

  8. Atypical gaze patterns in autistic adults are heterogeneous across but reliable within individuals.

    Mol. Autism, September 24, 2022

    Keles U., Kliemann D., Byrge L., Saarimäki H., Paul L.K., and Kennedy D.P.

  9. Cell-type specific transcriptomic signatures of neocortical circuit organization and their relevance to autism.

    Front. Neural Circuits, September 23, 2022

    Moussa A.J. and J. Wester

  10. Systematic evaluation of genome sequencing as a first-tier diagnostic test for prenatal and pediatric disorders.

    bioRxiv, September 23, 2022

    Lowther C., Valkanas E., Giordano J.L., Wang H.Z., Currall B.B., O'Keefe K., et al.

  11. Multi-site normative modeling of diffusion tensor imaging metrics using hierarchical Bayesian regression.

    Med. Image Comput. Comput. Assist. Interv., September 15, 2022

    Villalón-Reina J.E., Moreau C.A., Nir T.M., Jahanshad N., Simons Variation in Individuals Project Consortium, Maillard M., et al.

  12. Focus on your locus with a massively parallel reporter assay.

    J. Neurodev. Disord., September 9, 2022

    McAfee J.C., Bell J.L., Krupa O., Matoba N., J. Stein, and H. Won

  13. Autism is associated with interindividual variations of gray and white matter morphology.

    Biol. Psychiatry Cogn. Neurosci. Neuroimaging, September 6, 2022

    Mei T., Forde N.J., Floris D.L., Dell’Acqua F., Stones R., Ilioska I., et al.

  14. A capabilities approach to understanding and supporting autistic adulthood.

    Nat. Rev. Psychol., September 5, 2022

    Pellicano E., Fatima U., Hall G., Heyworth M., Lawson W., Lilley R., et al.

  15. Developmental variability in autism across 17000 autistic individuals and 4000 siblings without an autism diagnosis: Comparisons by cohort, intellectual disability, genetic etiology, and age at diagnosis.

    JAMA Pediatr., September 1, 2022

    Kuo S.S., van der Merwe C., Fu J.M., Carey C.E., M. Talkowski, S. Bishop, et al.

  16. Rare variants and the oligogenic architecture of autism.

    Trends Genet., September 1, 2022

    Wang T., Zhao P.A., and E. Eichler

  17. A phenotypic spectrum of autism is attributable to the combined effects of rare variants, polygenic risk and sex.

    Nat. Genet., September 1, 2022

    Antaki D., Guevara J., Maihofer A.X., Klein M., Gujral M., Grove J., et al.

  18. Examining the factor structure and discriminative utility of the infant behavior questionnaire-revised in infant siblings of autistic children.

    Child Dev., September 1, 2022

    Sung S., Fenoglio A., Wolff J.J., R. Schultz, K. Botteron, S. Dager, et al.

  19. Altered theta-beta ratio in infancy associates with family history of ADHD and later ADHD-relevant temperamental traits.

    J. Child Psychol. Psychiatry, September 1, 2022

    Begum-Ali J., Goodwin A., Mason L., Pasco G., Charman T., M. Johnson, et al.

  20. Rare coding variation provides insight into the genetic architecture and phenotypic context of autism.

    Nat. Genet., September 1, 2022

    Fu J.M., Satterstrom F.K., Peng M., Brand H., Collins R.L., Dong S., et al.

  21. Integrating de novo and inherited variants in 42,607 autism cases identifies mutations in new moderate-risk genes.

    Nat. Genet., September 1, 2022

    Zhou X., P. Feliciano, Shu C., Wang T., I. Astrovskaya, J. Hall, et al.

  22. The impact of birth order on language development in autistic children from Simplex families.

    J. Autism Dev. Disord., September 1, 2022

    McFayden T.C., Fok M., and Ollendick T.H.

  23. Genetic correlates of phenotypic heterogeneity in autism.

    Nat. Genet., September 1, 2022

    V. Warrier, Zhang X., Reed P., Havdahl A., Moore T.M., Cliquet F., et al.

  24. Measuring transcription factor binding and gene expression using barcoded self-reporting transposon calling cards and transcriptomes.

    NAR Genom. Bioinform., August 31, 2022

    Lalli M., Yen A., Thopte U., Dong F., Moudgil A., Chen X., et al.

  25. Genome-wide analyses of individual differences in quantitatively assessed reading- and language-related skills in up to 34,000 people.

    Proc. Natl. Acad. Sci. U. S. A., August 30, 2022

    Eising E., Mirza-Schreiber N., de Zeeuw E.L., Wang C.A., Truong D.T., Allegrini A.G., et al.

  26. Early life sleep disruption potentiates lasting sex-specific changes in behavior in genetically vulnerable Shank3 heterozygous autism model mice.

    Mol. Autism, August 29, 2022

    Lord J.S., Gay S.M., Harper K.M., Nikolova V.D., Smith K.M., Moy S.S., et al.

  27. GATK-gCNV: A rare copy number variant discovery algorithm and its application to exome sequencing in the UK Biobank.

    bioRxiv, August 26, 2022

    Babadi M., Fu J.M., Lee S.K., Smirnov A.N., Gauthier L.D., Walker M., et al.

  28. Rapid specification of human pluripotent stem cells to functional astrocytes.

    bioRxiv, August 26, 2022

    Lendemeijer B., Unkel M., Mossink B., Hijazi S., Sampedro S.G., Shpak G., et al.

  29. Isoform-level transcriptome-wide association uncovers extensive novel genetic risk mechanisms for neuropsychiatric disorders in the human brain.

    medRxiv, August 26, 2022

    Bhattacharya A., Jops C., Kim M., Wen C., Vo D.D., Hervoso J.L., et al.

  30. Measuring the response to visually presented faces in the human lateral prefrontal cortex.

    Cereb. Cortex Commun., August 18, 2022

    Nikel L., Sliwinska M., Kucuk E., Ungerleider L., and D. Pitcher

  31. Evaluation of data imputation strategies in complex, deeply-phenotyped data sets: The case of the EU-AIMS Longitudinal European Autism Project.

    BMC Med. Res. Methodol., August 16, 2022

    Llera A., Brammer M., Oakley B., Tillmann J., Zabihi M., Amelink J.S., et al.

  32. Convergent coexpression of autism associated genes suggests some novel risk genes may not be detectable in large-scale genetic studies.

    medRxiv, August 11, 2022

    Liao C., Moyses-Oliveira M., de Esch C.E.F., Bhavsar R., Nuttle X., Li A., et al.

  33. Temporal analysis of enhancers during mouse cerebellar development reveals dynamic and novel regulatory functions.

    eLife, August 9, 2022

    Ramirez M., Badayeva Y., Yeung J., Wu J., Abdalla-Wyse A., Yang Y., et al.

  34. Digit ratio (2D:4D) and maternal testosterone-to-estradiol ratio measured in early pregnancy.

    Sci. Rep., August 9, 2022

    Richards G., Aydin E., Tsompanidis A., Padaigaitė E., Austin T., Allison C., et al.

  35. Postmitotic accumulation of histone variant H3.3 in new cortical neurons establishes neuronal chromatin, transcriptome, and identity.

    Proc. Natl. Acad. Sci. U. S. A., August 9, 2022

    Funk O.H., Qalieh Y., Doyle D.Z., Lam M.M., and K. Kwan

  36. Temporal analysis of enhancers during mouse cerebellar development reveals dynamic and novel regulatory functions.

    Elife, August 9, 2022

    Ramirez M., Badayeva Y., Yeung J., Wu J., Abdalla-Wyse A., Yang E., et al.

  37. Clinical characteristics of seizures and epilepsy in individuals with recurrent deletions and duplications in the 16p11.2 region.

    Neurol. Genet., August 5, 2022

    Moufawad El Achkar C., Rosen A., Kessler S.K., Steinman K.J., S. Spence, Ramocki M., et al.

  38. Magnetoencephalography and electroencephalography can both detect differences in cortical responses to vibrotactile stimuli in individuals on the autism spectrum.

    Front. Psychiatry, August 5, 2022

    Ahlfors S.P., Graham S., Alho J., Joseph R.M., McGuiggan N.M., Nayal Z., et al.

  39. Cellular and behavioral effects of altered NaV1.2 sodium channel ion permeability in Scn2aK1422E mice.

    Hum. Mol. Genet., August 5, 2022

    Echevarria-Cooper D.M., Hawkins N.A., Misra S.N., Huffman A., Thaxton T., Thompson C.H., et al.

  40. Ca2+ imaging of self and other in medial prefrontal cortex during social dominance interactions in a tube test.

    Proc. Natl. Acad. Sci. U. S. A., August 2, 2022

    Garcia-Font N., Mitchell-Heggs R., Saxena K., Gabbert C., Taylor G., Mastroberadino G., et al.

  41. Increased perceived stress is negatively associated with activities of daily living and subjective quality of life in younger, middle, and older autistic adults.

    Autism Res., August 1, 2022

    MacQuaid G.A., Weiss C.H., Said A.J., K. Pelphrey, Lee N.R., and Wallace G.L.

  42. A cross-disorder dosage sensitivity map of the human genome.

    Cell, August 1, 2022

    Collins R.L., Glessner J.T., Porcu E., Lepamets M., Brandon R., Lauricella C., et al.

  43. D-aspartate oxidase gene duplication induces social recognition memory deficit in mice and intellectual disabilities in humans.

    Transl. Psychiatry, August 1, 2022

    Lombardo B., Pagani M., De Rosa A., Nunziato M., Migliarini S., Garofalo M., et al.

  44. Parental experiences with early identification and initial care for their child with autism: Tailored improvement strategies.

    J. Autism Dev. Disord., August 1, 2022

    Snijder M.I.J., Langerak I.P.C., Kaijadoe S.P.T., Buruma M.E., Verschuur R., Dietz C., et al.

  45. "I don't do much without researching things myself": A mixed methods study exploring the role of parent health literacy in autism services use for young children.

    J. Autism Dev. Disord., August 1, 2022

    Lindly O.J., Cabral J., Mohammed R., Garber I., Mistr K.B., and Kuhlthau K.A.

  46. Recording gene expression order in DNA by CRISPR addition of retron barcodes.

    Nature, August 1, 2022

    Bhattarai-Kline S., Lear S.K., Fishman C.B., Lopez S.C., Lockshin E., Schubert M.G., et al.

  47. Validation of autism diagnosis and clinical data in the SPARK cohort.

    J. Autism Dev. Disord., August 1, 2022

    E. Fombonne, Coppola L., Mastel S., and B. O'Roak

  48. FMRP-dependent production of large dosage-sensitive proteins is highly conserved.

    Genetics, July 30, 2022

    Flanagan K., Baradaran-Heravi A., Yin Q., Dao Duc K., Spradling A.C., and E. Greenblatt

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