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Simons Foundation
Simons Foundation

Autism Research Initiative (SFARI)

  • Funding

    Explore open funding opportunities for autism research.

    Funding Opportunities

    Early Career Awards

    • Fellows to Faculty Award
    • Shenoy Undergraduate Research Fellowship in Neuroscience (SURFiN)

    Investigator Awards

    • New Ideas

    Symposia & Travel Awards

    • Conferences & Courses Award

    Shared Programs

    • Pivot Fellowship
    • Simons Society of Fellows

    Resource for Applying

    • Open Funding Opportunities
    • Policies & Procedures
    • Instructional Videos
    • Past Funded Work
  • Supported Work

    SFARI has supported over 750 investigators studying autism-related research.

    Research Highlights

    Research

    • SFARI Investigators
    • Funded Projects
    • Publications

    Data Access & Tools

    • SFARI Base
    • SFARI Gene

    Centers & Initiatives

    • Simons Center for the Social Brain
    • Simons Initiative for the Developing Brain

    Collaborations & Consortia

    • SFARI Sex Differences
    • Autism Rat Models Consortium
  • Resources

    Access data, biospecimens and participant cohorts through SFARI Base.

    SFARI Base

    Cohorts & Tissue Banks

    • SPARK
    • Simons Searchlight
    • Simons Simplex Collection
    • Autism BrainNet
    • Autism Inpatient Collection

    Other Resources

    • Animal Models
    • Biospecimens
    • Research Match

    Data Access & Tools

    • SFARI Base
    • SFARI Gene
    • SFARI Genomes Browser
    • Genotypes & Phenotypes in Families
  • News

    See the latest news and updates from SFARI.

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    • Research Highlights
    • Meeting & Workshop Reports
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  • About

    SFARI’s mission is to advance the basic science of autism and related neurodevelopmental disorders.

    About SFARI

    About SFARI

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Autism Research Initiative (SFARI) Research

Research: Funded Publications

Explore publications and preprints from SFARI-funded investigators and researchers using SFARI-supported data and resources.

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Results

  1. A longitudinal study of parent gestures, infant responsiveness, and vocabulary development in infants at risk for autism spectrum disorder.

    J. Autism Dev. Disord., October 31, 2021

    Choi B., Shah P., Rowe M.L., C. Nelson, and H. Tager-Flusberg

  2. Precision autism: Genomic stratification of disorders making up the broad spectrum may demystify its "epidemic rates".

    J. Pers. Med., October 30, 2021

    Torres E.B.

  3. Macrophages on the margin: Choroid plexus immune responses.

    Trends Neurosci., October 30, 2021

    Cui J., Xu H., and M. Lehtinen

  4. Genetically identified amygdala-striatal circuits for valence-specific behaviors.

    Nat. Neurosci., October 30, 2021

    Zhang X., Guan W., Yang T., Furlan A., Xiao X., Yu K., et al.

  5. Analysis of the SPARK study COVID-19 parent survey: Early impact of the pandemic on access to services, child/parent mental health, and benefits of online services.

    Autism Res., October 30, 2021

    Bhat A.

  6. Patterns of delay in early gross motor and expressive language milestone attainment in probands with genetic conditions versus idiopathic ASD from SFARI registries.

    J. Child. Psychol. Psychiatry, October 30, 2021

    Wickstrom J., Farmer C., L. Green Snyder, Mitz A.R., S. Sanders, S. Bishop, et al.

  7. Development of the pupillary light reflex from 9 to 24 months: Association with common autism spectrum disorder (ASD) genetic liability and 3-year ASD diagnosis.

    J. Child. Psychol. Psychiatry, October 30, 2021

    Fish L.A., Nyström P., Gliga T., Gui A., Begum Ali J., Mason L., et al.

  8. Oestrogen engages brain MC4R signalling to drive physical activity in female mice.

    Nature, October 30, 2021

    Krause W.C., Rodriguez R., Gegenhuber B., Matharu N., Rodriguez A.N., Padilla-Roger A.M., et al.

  9. Mutational bias in spermatogonia impacts the anatomy of regulatory sites in the human genome.

    Genome Res., October 30, 2021

    Kaiser V.B., Talmane L., Kumar Y., Semple F., and MacLennan M.

  10. Integration of genetic, transcriptomic, and clinical data provides insight into 16p11.2 and 22q11.2 CNV genes.

    Genome Med., October 29, 2021

    Vysotskiy M., Zhong X., Miller-Fleming T.W., Zhou D., Autism Working Group of the Psychiatric Genomics Consortium, Bipolar Disorder Working Group of the Psychiatric Genomics Consortium, et al.

  11. De novo variant calling identifies cancer mutation profiles in the 1000 Genomes Project.

    Hum. Mutat., October 27, 2021

    Ng J., Vats P., Fritz-Waters E., Sarkar S., Sams E.I., Padhi E.M., et al.

  12. De novo variants in CACNA1E found in patients with intellectual disability, developmental regression and social cognition deficit but no seizures.

    Mol. Autism, October 24, 2021

    Royer-Bertrand B., Gygax M.J., Cisarova K., Rosenfeld J.A., Bassetti J.A., Moldovan O., et al.

  13. Rewiring of human neurodevelopmental gene regulatory programs by human accelerated regions.

    Neuron, October 18, 2021

    Girskis K.M., Stergachis A.B., DeGennaro E.M., R. Doan, Qian X., Johnson M.B., et al.

  14. mTOR-related synaptic pathology causes autism spectrum disorder-associated functional hyperconnectivity.

    Nat. Commun., October 17, 2021

    Pagani M., Barsotti N., Bertero A., Trakoshis S., Ulysse L., Locarno A., et al.

  15. Altered inflammatory response in FMRP-deficient microglia.

    iScience, October 15, 2021

    Parrott J.M., Oster T., and H. Lee

  16. Customized de novo mutation detection for any variant calling pipeline: SynthDNM.

    Bioinformatics, October 13, 2021

    Lian A., Guevara J., Xia K., and J. Sebat

  17. Oligogenic combinations of rare variants influence specific phenotypes in complex disorders.

    bioRxiv, October 11, 2021

    Pounraja V.K. and S. Girirajan

  18. Effects of early geometric confinement on the transcriptomic profile of human cerebral organoids.

    BMC Biotechnol., October 10, 2021

    Sen D., Voulgaropoulos A., and A. Keung

  19. Rare and de novo variants in 827 congenital diaphragmatic hernia probands implicate LONP1 as candidate risk gene.

    Am. J. Hum. Genet., October 5, 2021

    Qiao L., Xu L., Yu L., Wynn J., Hernan R., Zhou X., et al.

  20. Investigating the structure of trait rumination in autistic adults: A network analysis.

    Autism, October 4, 2021

    Williams Z.J., McKenney E.E., and Gotham K.O.

  21. How rare and common risk variation jointly affect liability for autism spectrum disorder.

    Mol. Autism, October 4, 2021

    Klei L., McClain L.L., Mahjani B., Panayidou K., Rubeis S.D., Grahnat A.-C.S., et al.

  22. Computational fingerprints: Modeling interactions between brain regions as points in a function space.

    bioRxiv, September 30, 2021

    Poskanzer C. and S. Anzellotti

  23. Identification of neural oscillations and epileptiform changes in human brain organoids.

    Nat. Neurosci., September 30, 2021

    R. Samarasinghe, Miranda O.A., Buth J.E., Mitchell S., Ferando I., Watanabe M., et al.

  24. Brief report: Impact of COVID-19 on individuals with ASD and their caregivers: A perspective from the SPARK cohort.

    J. Autism Dev. Disord., September 30, 2021

    C. White-Lehman, K. Law, A. Daniels, Toroney J., Vernoia B., Xiao S., et al.

  25. Bayesian estimation of cell-type-specific gene expression with prior derived from single-cell data.

    Genome Res., September 30, 2021

    Wang J., K. Roeder, and B. Devlin

  26. Analysis of gait synchrony and balance in neurodevelopmental disorders using computer vision techniques.

    Health Informatics J., September 29, 2021

    Ardalan A., Yamane N., Rao A.K., Montes J., and Goldman S.

  27. Probing mechanisms of visual spatial attention in mice.

    Trends Neurosci., September 29, 2021

    Speed A. and B. Haider

  28. Single-cell epigenomics reveals mechanisms of human cortical development.

    Nature, September 29, 2021

    Ziffra R.S., Kim C.N., Ross J.M., Wilfert A., T. Turner, Haeussler M., et al.

  29. Regulation of prefrontal patterning and connectivity by retinoic acid.

    Nature, September 29, 2021

    Shibata M., K. Pattabiraman, Lorente-Galdos B., Andrijevic D., Kim S.-K., Kaur N., et al.

  30. Psychological distress among caregivers raising a child with autism spectrum disorder during the COVID-19 pandemic.

    Autism Res., September 29, 2021

    Kalb L.G., Badillo-Goicoechea E., Holingue C., Riehm K.E., Thrul J., Stuart E.A., et al.

  31. Placental endocrine function shapes cerebellar development and social behavior.

    Nat. Neurosci., September 29, 2021

    Vacher C.-M., Lacaille H., O’Reilly J.J., Salzbank J., Bakalar D., Sebaoui S., et al.

  32. Systemic enhancement of serotonin signaling reverses social deficits in multiple mouse models for ASD.

    Neuropsychopharmacology, September 29, 2021

    Walsh J.J., Llorach P., Cardozo Pinto D.F., Wenderski W., Christoffel D.J., Salgado J.S., et al.

  33. Social and non-social sensory responsivity in toddlers at high-risk for autism spectrum disorder.

    Autism Res., September 29, 2021

    Gunderson J., Worthley E., Grzadzinski R., Burrows C., Estes A., L. Zwaigenbaum, et al.

  34. A human pleiotropic multiorgan condition caused by deficient Wnt secretion.

    N. Engl. J. Med., September 28, 2021

    Chai G., Szenker-Ravi E., Chung C., Li Z., Wang L., Khatoo M., et al.

  35. Spatial modulation of dark versus bright stimulus responses in the mouse visual system.

    Curr. Biol., September 25, 2021

    Williams B., Rosario J.D., Muzzu T., Peelman K., Coletta S., Bichler E.K., et al.

  36. Adaptation and serial choice bias are unaltered in autism.

    bioRxiv, September 15, 2021

    Bosch E., Fritsche M., Utzerath C., Buitelaar J.K., and de Lange F.P.

  37. Chromatin and gene-regulatory dynamics of the developing human cerebral cortex at single-cell resolution.

    Cell, September 15, 2021

    Trevino A.E., Müller F., Andersen J., Sundaram L., Kathiria A., Shcherbina A., et al.

  38. Genetic counseling as preventive intervention: Toward individual specification of transgenerational autism risk.

    J. Neurodev. Disord., September 14, 2021

    Marrus N., T. Turner, Forsen E., Bolster D., Marvin A., Whitehouse A., et al.

  39. Human neuronal networks on micro-electrode arrays are a highly robust tool to study disease-specific genotype-phenotype correlations in vitro.

    Stem Cell Reports, September 13, 2021

    Mossink B., Verboven A.H.A., van Hugte E.J.H., Gunnewiek T.M.K., Parodi G., Linda K., et al.

  40. SUPERGNOVA: Local genetic correlation analysis reveals heterogeneous etiologic sharing of complex traits.

    Genome Biol., September 5, 2021

    Zhang Y., Lu Q., Ye Y., Huang K., Liu W., Wu Y., et al.

  41. Translating polygenic risk scores for clinical use by estimating the confidence bounds of risk prediction.

    Nat. Commun., September 4, 2021

    Sun J., Wang Y., Folkersen L., Borné Y., Amlien I., Buil A., et al.

  42. Differences in the number of de novo mutations between individuals are due to small family-specific effects and stochasticity.

    Genome Res., September 1, 2021

    Goldmann J.M., Hampstead J.E., Wong W.S.W., Wilfert A.B., T. Turner, Jonker M.A., R. Bernier, Huynen M.A., E. Eichler, et al.

  43. Mapping the research domain criteria social processes constructs to the social responsiveness scale.

    J. Clin. Child Adolesc. Psychol., September 1, 2021

    Uljarević M., T. Frazier, Phillips J.M., Jo B., Littlefield S., and A. Hardan

  44. utr.annotation: A tool for annotating genomic variants that could influence post-transcriptional regulation.

    Bioinformatics, September 1, 2021

    Liu Y. and J. Dougherty

  45. Atypical genomic cortical patterning in autism with poor early language outcome.

    Sci. Adv., September 1, 2021

    M. Lombardo, Eyler L., Pramparo T., Gazestani V.H., Hagler D.J. Jr., Chen C.-H., et al.

  46. Distinct ensembles in the noradrenergic locus coeruleus evoke diverse cortical states.

    bioRxiv, September 1, 2021

    Noei S., Zouridis I.S., Logothetis N.K., S. Panzeri, and Totah N.K.

  47. Developmental and temporal characteristics of clonal sperm mosaicism.

    Cell, August 31, 2021

    Yang X., Breuss M.W., Xu X., Antaki D., James K.N., Stanley V., et al.

  48. Reduced sensory habituation in autism and its correlation with behavioral measures.

    J. Autism Dev. Disord., August 31, 2021

    Jamal W., Cardinaux A., Haskins A.J., and Kjelgaard M.

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