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Simons Foundation
Simons Foundation

Autism Research Initiative (SFARI)

  • Funding

    Explore open funding opportunities for autism research.

    Funding Opportunities

    Early Career Awards

    • Fellows to Faculty Award
    • Shenoy Undergraduate Research Fellowship in Neuroscience (SURFiN)

    Investigator Awards

    • New Ideas

    Symposia & Travel Awards

    • Conferences & Courses Award

    Shared Programs

    • Pivot Fellowship
    • Simons Society of Fellows

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    • Open Funding Opportunities
    • Policies & Procedures
    • Instructional Videos
    • Past Funded Work
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    SFARI has supported over 750 investigators studying autism-related research.

    Research Highlights

    Research

    • SFARI Investigators
    • Funded Projects
    • Publications

    Data Access & Tools

    • SFARI Base
    • SFARI Gene

    Centers & Initiatives

    • Simons Center for the Social Brain
    • Simons Initiative for the Developing Brain

    Collaborations & Consortia

    • SFARI Sex Differences
    • Autism Rat Models Consortium
  • Resources

    Access data, biospecimens and participant cohorts through SFARI Base.

    SFARI Base

    Cohorts & Tissue Banks

    • SPARK
    • Simons Searchlight
    • Simons Simplex Collection
    • Autism BrainNet
    • Autism Inpatient Collection

    Other Resources

    • Animal Models
    • Biospecimens
    • Research Match

    Data Access & Tools

    • SFARI Base
    • SFARI Gene
    • SFARI Genomes Browser
    • Genotypes & Phenotypes in Families
  • News

    See the latest news and updates from SFARI.

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    • Research Highlights
    • Meeting & Workshop Reports
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  • About

    SFARI’s mission is to advance the basic science of autism and related neurodevelopmental disorders.

    About SFARI

    About SFARI

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Autism Research Initiative (SFARI) Research

Research: Funded Publications

Explore publications and preprints from SFARI-funded investigators and researchers using SFARI-supported data and resources.

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Results

  1. Genomic selection signatures in autism spectrum disorder identifies cognitive genomic tradeoff and its relevance in paradoxical phenotypes of deficits versus potentialities.

    Sci. Rep., May 13, 2021

    Prakash A. and Banerjee M.

  2. Imbalanced social-communicative and restricted repetitive behavior subtypes of autism spectrum disorder exhibit different neural circuitry.

    Commun. Biol., May 13, 2021

    Bertelsen N., Landi I., Bethlehem R.A.I., Seidlitz J., Busuoli E.M., Mandelli V., et al.

  3. Bayonet-shaped language development in autism with regression: A retrospective study.

    Mol. Autism, May 11, 2021

    Gagnon D., Zeribi A., Douard É., Courchesne V., Rodríguez-Herreros B., Huguet G., et al.

  4. Individuals with autism spectrum disorder have altered visual encoding capacity.

    PLoS Biology, May 10, 2021

    Noel J.-P., Zhang L.-Q., and Stocker A.A.

  5. A unified resource and configurable model of the synapse proteome and its role in disease.

    Sci. Rep., May 9, 2021

    Sorokina O., Mclean C., Croning M.D.R., Heil K.F., Wysocka E., He X., et al.

  6. Broad frequency sensitivity and complex neural coding in the larval zebrafish auditory system.

    Curr. Biol., May 9, 2021

    Poulsen R.E., Scholz L.A., Constantin L., Favre-Bulle I., Vanwalleghem G.C., and E. Scott

  7. Chandelier cartridge density is reduced in the prefrontal cortex in autism.

    Cereb. Cortex, May 9, 2021

    Amina S., Falcone C., Wolf-Ochoa M.W., Vakilzadeh G., Allen E., Perez-Castro R., et al.

  8. Genoppi is an open-source software for robust and standardized integration of proteomic and genetic data.

    Nat. Commun., May 9, 2021

    G. Pintacuda, Lassen F.H., Hsu Y.-H.H., Kim A., Martín J.M., Malolepsza E., et al.

  9. Optimising a simple fully convolutional network for accurate brain age prediction in the PAC 2019 challenge.

    Front. Psychiatry, May 8, 2021

    Gong W., Beckmann C.F., Vedaldi A., Smith S.M., and Peng H.

  10. Rare variant analysis of 4241 pulmonary arterial hypertension cases from an international consortium implicates FBLN2, PDGFD, and rare de novo variants in PAH.

    Genome Med., May 8, 2021

    Zhu N., Swietlik E.M., Welch C.L., Pauciulo M.W., Hagen J.J., Zhou X., et al.

  11. Integrating barcoded neuroanatomy with spatial transcriptional profiling enables identification of gene correlates of projections.

    Nat. Neurosci., May 8, 2021

    Sun Y.-C., Chen X., Fischer S., Lu S., Zhan H., Gillis J., et al.

  12. An investigation of the diet, exercise, sleep, BMI, and health outcomes of autistic adults.

    Mol. Autism, May 6, 2021

    Weir E., Allison C., Ong K.K., and S. Baron-Cohen

  13. Gene-environment correlations and causal effects of childhood maltreatment on physical and mental health: A genetically informed approach.

    Lancet Psychiatry, May 3, 2021

    V. Warrier and Kwong A.S.F., Luo M., Dalvie S., Croft J., Sallis H.M., Baldwin J., Munafò M.R., Nievergelt C.M., Grant A.J., Burgess S., Moore T.M., Barzilay R., McIntosh A., van IJzendoorn M.H., Cecil C.A.M.

  14. Discovery of autism/intellectual disability somatic mutations in Alzheimer's brains: mutated ADNP cytoskeletal impairments and repair as a case study

    Mol. Psychiatry, May 1, 2021

    Ivashko-Pachima Y., Hadar A., Grigg I., Korenková I., Kapitansky O., Karmon G., et al.

  15. Assessing child postural variability: Development, feasibility, and reliability of a video coding system.

    Phys. Occup. Ther. Pediatr., May 1, 2021

    Abbruzzese L.D., Yamane N., Fein D., Naigles L., and Goldman S.

  16. Generation of fate patterns via intercellular forces.

    bioRxiv, May 1, 2021

    Nunley H., Xue X., Fu J., and Lubensky D.K.

  17. Delayed motor learning in a 16p11.2 deletion mouse model of autism is rescued by locus coeruleus activation.

    Nat. Neurosci., April 30, 2021

    Yin X., Jones N., Yang J., Asraoui N., Mathieu M.-E., Cai L., et al.

  18. The role of GABAergic signalling in neurodevelopmental disorders.

    Nat. Rev. Neurosci., April 30, 2021

    X. Tang, R. Jaenisch, and M. Sur

  19. The factor structure of the macaque social responsiveness scale-revised predicts social behavior and personality dimensions.

    Am. J. Primatol., April 30, 2021

    Talbot C.F., Maness A.C., Capitanio J.P., and K. Parker

  20. Exons as units of phenotypic impact for truncating mutations in autism.

    Mol. Psychiatry, April 30, 2021

    Chiang A.H., Chang J., Wang J., and D. Vitkup

  21. Geometric deep learning enables 3D kinematic profiling across species and environments.

    Nat. Methods, April 29, 2021

    Dunn T.W., Marshall J.D., Severson K.S., Aldarondo D.E., Hildebrand D.G.C., Chettih S.N., et al.

  22. CaMKII activation persistently segregates postsynaptic proteins via liquid phase separation.

    Nat. Neurosci., April 27, 2021

    Hosokawa T., Liu P.-W., Cai Q., Ferreira J.S., Levet F., Butler C., et al.

  23. Deletion of a non-canonical regulatory sequence causes loss of Scn1a expression and epileptic phenotypes in mice.

    Genome Med., April 25, 2021

    Haigh J.L., Adhikari A., Copping N.A., Stradleigh T., Wade A.A., Catta-Preta R., et al.

  24. A normative model representing autistic individuals amidst autism spectrum disorders phenotypic heterogeneity.

    medRxiv, April 22, 2021

    Portolese J., Gomes C.S., Gastaldi V.D., Paula C.S., Caetano S.C., Bordini D., et al.

  25. Tissue-specific enhancer functional networks for associating distal regulatory regions to disease.

    Cell Syst., April 20, 2021

    Chen X., Zhou J., Zhang R., Wong A.K., Park C.Y., Theesfeld C.L., et al.

  26. Coordinated postnatal maturation of striatal cholinergic interneurons and dopamine release dynamics in mice.

    J. Neurosci., April 19, 2021

    McGuirt A.F., Post M.R., Pigulevskiy I., D. Sulzer, and Lieberman O.J.

  27. Genetic vulnerability of exposures to antenatal maternal treatments in 1- to 2-month-old infants.

    Infancy, April 18, 2021

    Denisova K.

  28. Rare deleterious mutations of HNRNP genes result in shared neurodevelopmental disorders.

    Genome Med., April 18, 2021

    Gillentine M.A., Wang T., Hoekzema K., Rosenfeld J., Liu P., Guo H., et al.

  29. An epigenetically distinct subset of children with autism spectrum disorder resulting from differences in blood cell composition.

    Front. Neurol., April 16, 2021

    Jangjoo M., Goodman S.J., Choufani S., Trost B., S. Scherer, Kelley E., et al.

  30. Social cognition in 22q11.2 deletion syndrome and idiopathic developmental neuropsychiatric disorders.

    J. Neurodev. Disord., April 15, 2021

    Jalal R., Nair A., Lin A., Eckfeld A., Kushan L., Zinberg J., et al.

  31. Female-specific synaptic dysfunction and cognitive impairment in a mouse model of PCHD19 disorder.

    Science, April 14, 2021

    Hoshina N., Johnson-Venkatesh E.M., Hoshina M., and H. Umemori

  32. fmr1 mutation interacts with sensory experience to alter the early development of behavior and sensory coding in zebrafish.

    bioRxiv, April 14, 2021

    Zhu S., McCullough M., Pujic Z., Sibberas J., Sun B., Bucknall B., et al.

  33. The gut-brain-microbiome axis and its link to autism: Emerging insights and the potential of zebrafish models.

    Front. Cell Dev. Biol., April 13, 2021

    James D.M., Davidson E.A., Yanes J., Moshiree B., and J. Dallman

  34. The relationship between developmental coordination disorder and concurrent deficits in social communication and repetitive behaviors among children with autism spectrum disorder.

    Autism Res., April 13, 2021

    Ketcheson L.R., Pitchford E.A., and Wentz C.F.

  35. Perceived helpfulness of depression treatments among young adults with autism.

    Autism Res., April 12, 2021

    Zheng S., Taylor J.L., Adams R., Pezzimenti F., and S. Bishop

  36. Differences in subcortico-cortical interactions identified from connectome and microcircuit models in autism.

    Nat. Commun., April 11, 2021

    Park B.-Y., Hong S.-J., Valk S.L., Paquola C., Benkarim O., Bethlehem R.A.I., et al.

  37. Overexpression of CD47 is associated with brain overgrowth and 16p11.2 deletion syndrome.

    Proc. Natl. Acad. Sci. U. S. A., April 11, 2021

    J. Li, Brickler T., Banuelos A., Marjon K., Shcherbina A., Banerjee S., et al.

  38. Assessment of medical morbidities in a rhesus monkey model of naturally occurring low sociality.

    Autism Res., April 10, 2021

    Myers A.K., Talbot C.F., Rosso L.A.D., Maness A.C., Simmons S.M.V., Garner J.P., et al.

  39. Genotype and defects in microtubule-based motility correlate with clinical severity in KIF1A-associated neurological disorder.

    HGG Adv., April 6, 2021

    Boyle L., Rao L., Kaur S., Fan X., Mebane C., Hamm L., et al.

  40. Diagnostic classification and prognostic prediction using common genetic variants in autism spectrum disorder: Genotype-based deep learning.

    JMIR Med. Inform, April 6, 2021

    Wang H. and Avillach P.

  41. Autism spectrum disorders classification using genotype data: A deep learning-based predictive classifier.

    JMIR Med. Inform., April 6, 2021

    Wang H. and Avillach P.

  42. Microglia complement signaling promotes neuronal elimination and normal brain functional connectivity.

    bioRxiv, April 2, 2021

    Deivasigamani S., Miteva M.T., Natale S., Gutierrez-Barragan D., Basilico B., Di Angelantonio S., et al.

  43. Measuring depression in autistic adults: Psychometric validation of the Beck Depression Inventory-II.

    Assessment, April 1, 2021

    Williams Z.J., Everaert J., and Gotham K.O.

  44. Spontaneous neural activity relates to psychiatric traits in 16p11.2 CNV carriers: An analysis of EEG spectral power and multiscale entropy.

    J. Psychiatr. Res., April 1, 2021

    Al-Jawahiri R., Jones M., and Milne E.

  45. Computation of the electroencephalogram (EEG) from network models of point neurons.

    PloS Comput. Biol., April 1, 2021

    Martínez-Cañada P., Ness T.V., Einevoll G.T., Fellin T., and S. Panzeri

  46. Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.

    Nat. Hum. Behav., March 31, 2021

    Wendt F.R., Pathak G.A., Lencz T., Krystal J.H., Gelernter J., and R. Polimanti

  47. De novo structural mutation rates and gamete-of-origin biases revealed through genome sequencing of 2,396 families.

    Am. J. Hum. Genet., March 31, 2021

    Belyeu J.R., Brand H., Wang H., Zhao X., Pedersen B.S., Feusier J., et al.

  48. Autism BrainNet.

    Arch. Pathol. Lab. Med., March 31, 2021

    M. Anderson, Quinton R., Kelly K., Falzon A., Halladay A., Schumann C.M., et al.

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