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Simons Foundation
Simons Foundation

Autism Research Initiative (SFARI)

  • Funding

    Explore open funding opportunities for autism research.

    Funding Opportunities

    Early Career Awards

    • Fellows to Faculty Award
    • Shenoy Undergraduate Research Fellowship in Neuroscience (SURFiN)

    Investigator Awards

    • New Ideas

    Symposia & Travel Awards

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    Shared Programs

    • Pivot Fellowship
    • Simons Society of Fellows

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    • Open Funding Opportunities
    • Policies & Procedures
    • Instructional Videos
    • Past Funded Work
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    SFARI has supported over 750 investigators studying autism-related research.

    Research Highlights

    Research

    • SFARI Investigators
    • Funded Projects
    • Publications

    Data Access & Tools

    • SFARI Base
    • SFARI Gene

    Centers & Initiatives

    • Simons Center for the Social Brain
    • Simons Initiative for the Developing Brain

    Collaborations & Consortia

    • SFARI Sex Differences
    • Autism Rat Models Consortium
  • Resources

    Access data, biospecimens and participant cohorts through SFARI Base.

    SFARI Base

    Cohorts & Tissue Banks

    • SPARK
    • Simons Searchlight
    • Simons Simplex Collection
    • Autism BrainNet
    • Autism Inpatient Collection

    Other Resources

    • Animal Models
    • Biospecimens
    • Research Match

    Data Access & Tools

    • SFARI Base
    • SFARI Gene
    • SFARI Genomes Browser
    • Genotypes & Phenotypes in Families
  • News

    See the latest news and updates from SFARI.

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    SFARI’s mission is to advance the basic science of autism and related neurodevelopmental disorders.

    About SFARI

    About SFARI

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Autism Research Initiative (SFARI) Research

Research: Funded Publications

Explore publications and preprints from SFARI-funded investigators and researchers using SFARI-supported data and resources.

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Results

  1. Motor impairment increases in children with autism spectrum disorder as a function of social communication, cognitive and functional impairment, repetitive behavior severity, and comorbid diagnoses: A SPARK study report.

    Autism Res., December 31, 2020

    Bhat A.N.

  2. Neuronal correlates of strategic cooperation in monkeys.

    Nat. Neurosci., December 31, 2020

    Ong W.S., Madlon-Kay S., and M. Platt

  3. SCN2A-developmental and epileptic encephalopathies: Challenges to trial-readiness for non-seizure outcomes.

    Epilepsia, December 31, 2020

    Berg A.T., Palac H., Wilkening G., Zelko F., and Schust Meyer L.

  4. A genetics-first approach to dissecting the heterogeneity of autism: Phenotypic comparison of autism risk copy number variants.

    Am. J. Psychiatry, December 31, 2020

    Chawner S.J.R.A., Doherty J.L., Anney R., Antshel K.M., C. Bearden, R. Bernier, et al.

  5. Eliciting language samples for analysis (ELSA): A new protocol for assessing expressive language and communication in autism.

    Autism. Res., December 31, 2020

    Barokova M.D., La Valle C., Hassan S., Lee C., Xu M., McKechnie R., et al.

  6. Transcriptomic insight into the polygenic mechanisms underlying psychiatric disorders.

    Biol. Psychiatry, December 31, 2020

    Hernandez L.M., Kim M., Hoftman G.D., Haney J.R., de la Torre-Ubieta L., Pasaniuc B., et al.

  7. Emotion dysregulation is substantially elevated in autism compared to the general population: Impact on psychiatric services.

    Autism Res, December 30, 2020

    Conner C.M., Golt J., R. Shaffer, Righi G., M. Siegel, and Mazefsky C.A.

  8. H-MAGMA, inheriting a shaky statistical foundation, yields excess false positives.

    Ann. Hum. Gen., December 28, 2020

    Yurko R., K. Roeder, B. Devlin, and G’Sell M.

  9. CLIP and massively parallel functional analysis of CELF6 reveal a role in destabilizing synaptic gene mRNAs through interaction with 3′ UTR elements.

    Cell Rep., December 21, 2020

    Rieger M.A., King D.M., Crosby H., Liu Y., Cohen B.A., and J. Dougherty

  10. The parvalbumin hypothesis of autism spectrum disorder.

    Front. Cell. Neurosci., December 17, 2020

    Filice F., Janickova L., Henzi T., Bilella A., and B. Schwaller

  11. Detection of eye contact with deep neural networks is as accurate as human experts.

    Nat. Commun., December 13, 2020

    Chong E., Clark-Whitney E., Southerland A., Stubbs E., Miller C., Ajodan E.L., et al.

  12. Developmental loss of ErbB4 in PV interneurons disrupts state-dependent cortical circuit dynamics.

    bioRxiv, December 10, 2020

    R. Batista-Brito, Majumdar A., Nuno A., Vinck M., and J. Cardin

  13. Missense variant contribution to USP9X-female syndrome.

    NPJ. Genom. Med., December 8, 2020

    Jolly L.A., Parnell E., Gardner A.E., Corbett M.A., Pérez-Jurado L.A., Shaw M., et al.

  14. Inflammation of the embryonic choroid plexus barrier following maternal immune activation.

    Dev. Cell, December 6, 2020

    Cui J., Shipley F.B., Shannon M.L., Alturkistani O., Dani N., Webb M.D., et al.

  15. Serotonin differentially modulates the temporal dynamics of the limbic response to facial emotions in male adults with and without autism spectrum disorder (ASD): A randomised placebo-controlled single-dose crossover trial.

    Neuropsychopharmacology, November 30, 2020

    Wong N.M.L., Findon J.L., Wichers R.H., Giampietro V., Stoencheva V., Murphy C.M., et al.

  16. Acute social isolation evokes midbrain craving responses similar to hunger.

    Nat. Neurosci., November 30, 2020

    Tomova L., Wang K.L., Thompson T., Matthews G.A., Takahashi A., Tye K.M., et al.

  17. Early motor differences in infants at elevated likelihood of autism spectrum disorder and/or attention deficit hyperactivity disorder.

    J. Autism Dev. Disord., November 30, 2020

    Begum Ali J., Charman T., M. Johnson, E. Jones, and and the Basis/STAARS Team.

  18. FMRP links optimal codons to mRNA stability in neurons.

    Proc. Natl. Acad. Sci. U. S. A., November 30, 2020

    Shu H., Donnard E., Liu B., Jung S., Wang R., and J. Richter

  19. Altered brain-wide auditory networks in a zebrafish model of fragile X syndrome.

    BMC Biol., November 29, 2020

    Constantin L., Poulsen R.E., Scholz L.A., Favre-Bulle I.A., Taylor M.A., Sun B., et al.

  20. Sound generation in zebrafish with bio-opto-acoustics.

    Nat. Commun., November 29, 2020

    Favre-Bulle I.A., Taylor M.A., Marquez-Legorreta E., Vanwalleghem G., Poulsen R.E., Rubinsztein-Dunlop H., et al.

  21. 'There and back again'-forward genetics and reverse phenotyping in pulmonary arterial hypertension.

    Genes (Basel), November 26, 2020

    Swietlik E.M., Prapa M., Martin J.M., Pandya D., Auckland K., Morrell N.W., Gräf S.

  22. Distinct prefrontal top-down circuits differentially modulate sensorimotor behavior.

    Nat. Commun., November 25, 2020

    Huda R., Sipe G.O., Breton-Provencher V., Cruz K.G., Pho G.N., Adam E., et al.

  23. DNMT3A haploinsufficiency results in behavioral deficits and global epigenomic dysregulation shared across neurodevelopmental disorders.

    Cell Rep., November 23, 2020

    Christian D.L., Wu D.Y., Martin J.R., Moore J.R., Liu Y.R., Clemens A.W., et al.

  24. The stability flexibility tradeoff and the dark side of detail.

    Cogn. Affect. Behav. Neurosci., November 23, 2020

    Nassar M.R. and V. Troiani

  25. Inferring the molecular and phenotypic impact of amino acid variants with MutPred2.

    Nat. Commun., November 19, 2020

    Pejaver V., Urresti J., Lugo-Martinez J., Pagel K.A., Lin G.N., Nam H.J., et al.

  26. Identifying cell type specific driver genes in autism-associated copy number loci from cerebral organoids.

    bioRxiv, November 17, 2020

    Lim E.T., Chan Y., Burns M.J., Guo X., Erdin S., Tai D.J.C., et al.

  27. Phenotypic subtyping and re-analyses of existing transcriptomic data from autistic probands in simplex families reveal differentially expressed and ASD trait-associated genes.

    Front Neurol., November 10, 2020

    V. Hu and Bi C.

  28. 16p11.2 microdeletion imparts transcriptional alterations in human iPSC-derived models of early neural development.

    Elife, November 9, 2020

    Roth J.G., Muench K.L., Asokan A., Gai H., Verma Y., Weber S., et al.

  29. TRAP-based allelic translation efficiency imbalance analysis to identify genetic regulation of ribosome occupancy in specific cell types in vivo.

    bioRxiv, November 6, 2020

    Liu Y., Fischer A.D., St. Pierre C.L., Macias-Velasco J.F., Lawson H.A., and J. Dougherty

  30. Altered hippocampal-prefrontal communication during anxiety-related avoidance in mice deficient for the autism-associated gene Pogz.

    Elife, November 5, 2020

    Cunniff M.M., E. Markenscoff-Papadimitriou, Ostrowski J., J. Rubenstein, and V. Sohal

  31. Fractionating autism based on neuroanatomical normative modeling.

    Transl. Psychiatry, November 5, 2020

    Zabihi M., Floris D.L., Kia S.M., Wolfers T., Tillmann J., Arenas A.L., et al.

  32. Mapping the research domain criteria social processes constructs to the social responsiveness scale.

    J. Am. Acad. Child Adolesc. Psychiatry, November 2, 2020

    Uljarević M., T. Frazier, Phillips J.M., Jo B., Littlefield S., and A. Hardan

  33. Cas9 gene therapy for Angelman syndrome traps Ube3a-ATS long non-coding RNA.

    Nature, October 31, 2020

    Wolter J.M., Mao H., Fragola G., Simon J.M., Krantz J.L., Bazick H.O., et al.

  34. Atypical development of attentional control associates with later adaptive functioning, autism and ADHD traits.

    J Autism Dev. Disord., October 31, 2020

    Hendry A., E. Jones, Bedford R., Andersson Konke L., Begum Ali J., Bӧlte S., et al.

  35. Revealing the structure of pharmacobehavioral space through motion sequencing.

    Nat. Neurosci., October 31, 2020

    Wiltschko A.B., Tsukahara T., Zeine A., Anyoha R., Gillis W.F., Markowitz J.E., et al.

  36. A configurable model of the synaptic proteome reveals the molecular mechanisms of disease co-morbidity.

    bioRxiv, October 29, 2020

    Sorokina O., Mclean C., Croning M.D.R., Heil K.F., Wysocka E., He X., et al.

  37. Brunner syndrome associated MAOA dysfunction in human dopaminergic neurons results in NMDAR hyperfunction and increased network activity.

    bioRxiv, October 29, 2020

    Shi Y., van Rhijn J.-R., Bormann M., Mossink B., Frega M., Recaioglu H., et al.

  38. Modeling flexible behavior in childhood to adulthood shows age-dependent learning mechanisms and less optimal learning in autism in each age group.

    PLoS Biol., October 28, 2020

    Crawley D., Zhang L., E. Jones, Ahmad J., Oakley B., San José Cáceres A., et al.

  39. Gamete simulation improves polygenic transmission disequilibrium analysis.

    bioRxiv, October 27, 2020

    Chen J., You J., Zhao Z., Ni Z., Huang K., Wu Y., et al.

  40. Regulation of neural gene expression by estrogen receptor alpha.

    bioRxiv, October 21, 2020

    Gegenhuber B., Wu M.V., Bronstein R., and J. Tollkuhn

  41. Accurate brain age prediction with lightweight deep neural networks.

    Med. Image Anal., October 18, 2020

    Peng H., Gong W., Beckmann C.F., Vedaldi A., and Smith S.M.

  42. Mutations associated with neuropsychiatric conditions delineate functional brain connectivity dimensions contributing to autism and schizophrenia.

    Nat. Commun., October 18, 2020

    Moreau C., Urchs S., Kuldeep K., Orban P., Schramm C., Dumas G., et al.

  43. Heterozygous deletion of SYNGAP enzymatic domains in rats causes selective learning, social and seizure phenotypes.

    bioRxiv, October 14, 2020

    Katsanevaki D., Till S.M., Buller-Peralta I., Watson T.C., Nawaz M.S., Arkell D., et al.

  44. Human cerebral organoids reveal early spatiotemporal dynamics and pharmacological responses of UBE3A.

    Stem Cell Reports, October 13, 2020

    Sen D., Voulgaropoulos A., Drobna Z., and A. Keung

  45. Characterization of special interests in autism spectrum disorder: A brief review and pilot study using the special interests survey.

    J. Autism Dev. Disord., October 8, 2020

    Nowell K.P., Bernardin C.J., Brown C., and S. Kanne

  46. Developmental paths to anxiety in an autism-enriched infant cohort: The role of temperamental reactivity and regulation.

    J. Autism Dev. Disord., October 8, 2020

    Ersoy M., Charman T., Pasco G., Carr E., M. Johnson, E. Jones, et al.

  47. Alexithymia in autism: Cross-sectional and longitudinal associations with social-communication difficulties, anxiety and depression symptoms.

    Psychol. Med., October 7, 2020

    Oakley B.F.M., E. Jones, Crawley D., Charman T., Buitelaar J., Tillmann J., et al.

  48. De novo missense variants disrupting protein-protein interactions affect risk for autism through gene co-expression and protein networks in neuronal cell types.

    Mol. Autism, October 7, 2020

    Chen S., Wang J., A. E. Çiçek, K. Roeder, H. Yu, and B. Devlin

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