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Simons Foundation
Simons Foundation

Autism Research Initiative (SFARI)

  • Funding

    Explore open funding opportunities for autism research.

    Funding Opportunities

    Early Career Awards

    • Fellows to Faculty Award
    • Shenoy Undergraduate Research Fellowship in Neuroscience (SURFiN)

    Investigator Awards

    • New Ideas

    Symposia & Travel Awards

    • Conferences & Courses Award

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    • Pivot Fellowship
    • Simons Society of Fellows

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    • Instructional Videos
    • Past Funded Work
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    SFARI has supported over 750 investigators studying autism-related research.

    Research Highlights

    Research

    • SFARI Investigators
    • Funded Projects
    • Publications

    Data Access & Tools

    • SFARI Base
    • SFARI Gene

    Centers & Initiatives

    • Simons Center for the Social Brain
    • Simons Initiative for the Developing Brain

    Collaborations & Consortia

    • SFARI Sex Differences
    • Autism Rat Models Consortium
  • Resources

    Access data, biospecimens and participant cohorts through SFARI Base.

    SFARI Base

    Cohorts & Tissue Banks

    • SPARK
    • Simons Searchlight
    • Simons Simplex Collection
    • Autism BrainNet
    • Autism Inpatient Collection

    Other Resources

    • Animal Models
    • Biospecimens
    • Research Match

    Data Access & Tools

    • SFARI Base
    • SFARI Gene
    • SFARI Genomes Browser
    • Genotypes & Phenotypes in Families
  • News

    See the latest news and updates from SFARI.

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    SFARI’s mission is to advance the basic science of autism and related neurodevelopmental disorders.

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Autism Research Initiative (SFARI) Research

Research: Funded Publications

Explore publications and preprints from SFARI-funded investigators and researchers using SFARI-supported data and resources.

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  1. Reciprocal copy number variations at 22q11.2 produce distinct and convergent neurobehavioral impairments relevant for schizophrenia and autism spectrum disorder.

    Biol. Psychiatry, July 31, 2020

    Lin A., Vajdi A., Kushan-Wells L., Helleman G., Hansen L.P., Jonas R.K., et al.

  2. Symmetric neural progenitor divisions require chromatin-mediated homologous recombination DNA repair by Ino80.

    Nat. Commun., July 30, 2020

    Keil J.M., Doyle D.Z., Qalieh A., Lam M.M., Funk O.H., Qalieh Y., et al.

  3. Genome-wide detection of tandem DNA repeats that are expanded in autism.

    Nature, July 26, 2020

    Trost B., Engchuan W., Nguyen C.M., Thiruvahindrapuram B., Dolzhenko E., Backstrom I., et al.

  4. Vaccine hesitancy and attributions for autism among racially and ethnically diverse groups of parents of children with autism spectrum disorder: A pilot study.

    Autism Res., July 23, 2020

    Chang J. and R. Goin-Kochel

  5. Cross-species regulatory sequence activity prediction.

    PLoS Comput. Biol., July 20, 2020

    Kelley D.R.

  6. A psychometrically robust screening tool to rapidly identify socially impaired monkeys in the general population.

    Autism Res., July 16, 2020

    Talbot C.F., Garner J.P., Maness A.C., McCowan B., Capitanio J.P., and K. Parker

  7. Cortico-basal ganglia circuits underlying dysfunctional control of motor behaviors in neuropsychiatric disorders.

    Curr. Opin. Genet. Dev., July 15, 2020

    Vicente A.M., Martins G.J., and R. Costa

  8. DAS-II cognitive profiles are not diagnostically meaningful for autism: A ROC analysis.

    Autism Res., July 15, 2020

    Clements C.C., Sparding T., R. Schultz, Yerys B.E., and Watkins M.W.

  9. Leveraging large genomic datasets to illuminate the pathobiology of autism spectrum disorders.

    Neuropsychopharmacology, July 14, 2020

    Quick V.B.S. and Wang B.

  10. Tauopathy in the young autistic brain: Novel biomarker and therapeutic target.

    Transl. Psychiatry, July 13, 2020

    Grigg I., Ivashko-Pachima Y., Hait T.A., Korenková V., Touloumi O., Lagoudaki R., et al.

  11. Vascular contributions to 16p11.2 deletion autism syndrome modeled in mice.

    Nat. Neurosci., July 12, 2020

    Ouellette J., Toussay X., Comin C.H., Costa L.D.F., Ho M., Lacalle-Aurioles M., et al.

  12. The genetic control of stoichiometry underlying autism.

    Annu. Rev. Neurosci., July 7, 2020

    R. Darnell

  13. Quantitative genome-wide association study of six phenotypic subdomains identifies novel genome-wide significant variants in autism spectrum disorder.

    Transl. Psychiatry, July 5, 2020

    Yousaf A., Waltes R., Haslinger D., Klauck S.M., Duketis E., Sachse M., et al.

  14. Mapping and characterization of structural variation in 17,795 human genomes.

    Nature, July 1, 2020

    Abel H.J., Larson D.E., Regier A.A., Chiang C., Das I., Kanchi K.L., et al.

  15. A multiplex human pluripotent stem cell platform defines molecular and functional subclasses of autism-related genes.

    Cell Stem Cell, July 1, 2020

    Cederquist G.Y., Tchieu J., Callahan S.J., Ramnarine K., Ryan S., Zhang C., et al.

  16. Measuring robustness of brain networks in autism spectrum disorder with Ricci curvature.

    Sci. Rep., July 1, 2020

    Simhal A.K., Carpenter K.L.H., Nadeem S., Kurtzberg J., Song A., Tannenbaum A., et al.

  17. Reciprocal influences between parent input and child language skills in dyads involving high- and low-risk infants for autism spectrum disorder.

    Autism Res., June 30, 2020

    Choi B., C. Nelson, Rowe M.L., and H. Tager-Flusberg

  18. The role of somatic mosaicism in brain disease.

    Curr. Opin. Genet. Dev., June 30, 2020

    Jourdon A., Fasching L., Scuderi S., A. Abyzov, and F. Vaccarino

  19. Homeostatic plasticity fails at the intersection of autism-gene mutations and a novel class of common genetic modifiers.

    Elife, June 30, 2020

    Genç Ö., An J.-Y., Fetter R.D., Kulik Y., Zunino G., S. Sanders, et al.

  20. Kalirin and Trio: RhoGEFs in synaptic transmission, plasticity, and complex brain disorders.

    Trends Neurosci., June 30, 2020

    Paskus J.D., B. Herring, and Roche K.W.

  21. Does the factor structure of IQ differ between the differential ability scales (DAS-II) normative sample and autistic children?

    Autism Res., June 30, 2020

    Clements C.C., Watkins M.W., R. Schultz, and Yerys B.E.

  22. Gesture development, caregiver responsiveness, and language and diagnostic outcomes in infants at high and low risk for autism.

    J. Autism Dev. Disord., June 30, 2020

    Choi B., Shah P., Rowe M.L., C. Nelson, and H. Tager-Flusberg

  23. A selective inference approach for false discovery rate control using multiomics covariates yields insights into disease risk.

    Proc. Natl. Acad. Sci. U. S. A., June 29, 2020

    Yurko R., G'Sell M., K. Roeder, and B. Devlin

  24. Neuronal inactivity co-opts LTP machinery to drive potassium channel splicing and homeostatic spike widening.

    Cell, June 24, 2020

    Li B., Suutari B.S., Sun S.D., Luo Z., Wei C., Chenouard N., et al.

  25. Parallel RNA and DNA analysis after deep-sequencing (PRDD-seq) reveals cell type specific lineage patterns in human brain.

    Proc. Natl. Acad. Sci. USA, June 22, 2020

    Huang A.Y., Li P., Rodin R.E., Kim S.N., Dou Y., Kenny C.J., et al.

  26. Cortical neurons derived from human pluripotent stem cells lacking FMRP display altered spontaneous firing patterns.

    Mol. Autism, June 18, 2020

    Das Sharma S., Pal R., Reddy B.K., Selvaraj B.T., Raj N., Samaga K.K., et al.

  27. Dissecting autism genetic risk using single-cell RNA-seq data.

    bioRxiv, June 16, 2020

    Chen S., Zhou X., Byington E., Bruce S.L., Zhang H., and Y. Shen

  28. Social attention: What is it, how can we measure it, and what can it tell us about autism and ADHD?

    Prog. Brain Res., June 15, 2020

    Braithwaite E.K., Gui A., and E. Jones

  29. GABA A Rα2 is decreased in the axon initial segment of pyramidal cells in specific areas of the prefrontal cortex in autism.

    Neuroscience, June 14, 2020

    Hong T., Falcone C., Dufour B., Amina S., Perez Castro R., Regalado J., et al.

  30. Reduced sleep pressure in young children with autism.

    Sleep, June 14, 2020

    Arazi A., Meiri G., Danan D., Michaelovski A., Flusser H., Menashe I., et al.

  31. De novo damaging DNA coding mutations are associated with obsessive-compulsive disorder and overlap with Tourette’s disorder and autism.

    Biol. Psychiatry, June 14, 2020

    Cappi C., Oliphant M.E., Péter Z., Zai G., do Rosário M.C., Sullivan C.A.W., et al.

  32. Microexons: At the nexus of nervous system development, behaviour and autism spectrum disorder.

    Curr. Opin. Genet. Dev., June 10, 2020

    Gonatopoulos-Pournatzis T. and B. Blencowe

  33. Mutational bias and the protein code shape the evolution of splicing enhancers.

    Nat. Commun., June 4, 2020

    Rong S., Buerer L., Rhine C.L., Wang J., Cygan K.J., and W. Fairbrother

  34. Autism-associated Shank3 is essential for homeostatic compensation in rodent V1.

    Neuron, June 2, 2020

    Tatavarty V., Torrado Pacheco A., Groves Kuhnle C., Lin H., Koundinya P., Miska N.J., et al.

  35. Neural and behavioural indices of face processing in siblings of children with autism spectrum disorder (ASD): A longitudinal study from infancy to mid-childhood.

    Cortex, May 31, 2020

    Shephard E., Milosavljevic B., Mason L., M. Elsabbagh, Tye C., Gliga T., et al.

  36. Neuroinflammatory gene expression alterations in anterior cingulate cortical white and gray matter of males with autism spectrum disorder.

    Autism Res., May 31, 2020

    Sciara A.N., Beasley B., Crawford J.D., Anderson E.P., Carrasco T., Zheng S., et al.

  37. Insulin-like growth factor and insulin-like growth factor receptor expression in human idiopathic autism fusiform gyrus tissue.

    Autism Res., May 31, 2020

    Cioana M., Michalski B., and Fahnestock M.

  38. Identification of amygdala-expressed genes associated with autism spectrum disorder.

    Mol. Autism, May 26, 2020

    Herrero M.J., Velmeshev D., Hernandez-Pineda D., Sethi S., Sorrells S., Banerjee P., et al.

  39. A structural variation reference for medical and population genetics.

    Nature, May 26, 2020

    Collins R.L., Brand H., Karczewski K.J., Zhao X., Alföldi J., Francioli L.C., et al.

  40. Saccade dysmetria indicates attenuated visual exploration in autism spectrum disorder.

    J. Child Psychol. Psychiatry, May 24, 2020

    Bast N., Mason L., Freitag C.M., Smith T., Portugal A.M., Poustka L., et al.

  41. Selective inhibition of glycogen synthase kinase 3α corrects pathophysiology in a mouse model of fragile X syndrome.

    Sci. Transl. Med., May 19, 2020

    McCamphill P.K., Stoppel L.J., Senter R.K., Lewis M.C., Heynen A.J., Stoppel D.C., et al.

  42. Increased variability but intact integration during visual navigation in autism spectrum disorder.

    Proc. Natl. Acad. Sci. U. S. A., May 18, 2020

    Noel J.P., Lakshminarasimhan K.J., and Park H.

  43. Autism and attention-deficit/hyperactivity disorders and symptoms in children with neurofibromatosis type 1.

    Dev. Med. Child Neurol., May 13, 2020

    Morotti H., Mastel S., Keller K., Barnard R.A., Hall T., B. O'Roak, et al.

  44. Insufficient evidence for “autism-specific” genes.

    Am. J. Hum. Genet., May 6, 2020

    Myers S.M., Challman T.D., R. Bernier, T. Bourgeron, W. Chung, J. Constantino, et al.

  45. Loss of the neural-specific BAF subunit ACTL6B relieves repression of early response genes and causes recessive autism.

    Proc. Natl. Acad. Sci. U. S. A., May 4, 2020

    Wenderski W., Wang L., Krokhotin A., Walsh J.J., Li H., Shoji H., et al.

  46. Observed emotional reactivity in response to frustration tasks in psychiatrically hospitalized youth with autism spectrum disorder.

    Autism, May 1, 2020

    Northrup J.B., M. Goodwin, Montrenes J., Vezzoli J., Golt J., Peura C.B., et al.

  47. N-terminal variant Asp14Asn of the human p70 S6 Kinase 1 enhances translational signaling causing different effects in developing and mature neuronal cells.

    Neurobiol. Learn. Mem., April 30, 2020

    Venkatasubramani J.P., Subramanyam P., Pal R., Reddy B.K., Srinivasan D.J., Chattarji S., et al.

  48. A large population-based investigation into the genetics of susceptibility to gastrointestinal infections and the link between gastrointestinal infections and mental illness.

    Hum. Genet., April 30, 2020

    Nudel R., Appadurai V., Schork A.J., Buil A., Bybjerg-Grauholm J., M. Daly, et al.

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