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Simons Foundation
Simons Foundation

Autism Research Initiative (SFARI)

  • Funding

    Explore open funding opportunities for autism research.

    Funding Opportunities

    Early Career Awards

    • Fellows to Faculty Award
    • Shenoy Undergraduate Research Fellowship in Neuroscience (SURFiN)

    Investigator Awards

    • New Ideas

    Symposia & Travel Awards

    • Conferences & Courses Award

    Shared Programs

    • Pivot Fellowship
    • Simons Society of Fellows

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    • Open Funding Opportunities
    • Policies & Procedures
    • Instructional Videos
    • Past Funded Work
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    SFARI has supported over 750 investigators studying autism-related research.

    Research Highlights

    Research

    • SFARI Investigators
    • Funded Projects
    • Publications

    Data Access & Tools

    • SFARI Base
    • SFARI Gene

    Centers & Initiatives

    • Simons Center for the Social Brain
    • Simons Initiative for the Developing Brain

    Collaborations & Consortia

    • SFARI Sex Differences
    • Autism Rat Models Consortium
  • Resources

    Access data, biospecimens and participant cohorts through SFARI Base.

    SFARI Base

    Cohorts & Tissue Banks

    • SPARK
    • Simons Searchlight
    • Simons Simplex Collection
    • Autism BrainNet
    • Autism Inpatient Collection

    Other Resources

    • Animal Models
    • Biospecimens
    • Research Match

    Data Access & Tools

    • SFARI Base
    • SFARI Gene
    • SFARI Genomes Browser
    • Genotypes & Phenotypes in Families
  • News

    See the latest news and updates from SFARI.

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    SFARI’s mission is to advance the basic science of autism and related neurodevelopmental disorders.

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Autism Research Initiative (SFARI) Research

Research: Funded Publications

Explore publications and preprints from SFARI-funded investigators and researchers using SFARI-supported data and resources.

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  1. Comparison of fecal microbiota in children with autism spectrum disorders and neurotypical siblings in the Simons Simplex Collection.

    PLoS One, September 30, 2015

    Son J.S., Zheng L.J., Rowehl L.M., Tian X., Zhang Y., Zhu W., et al.

  2. Genome-wide variant analysis of simplex autism families with an integrative clinical-bioinformatics pipeline.

    Cold Spring Harb. Mol. Case Stud., September 30, 2015

    Jiménez-Barrón L.T., O'Rawe J.A., Wu Y., Yoon M., Fang H., I. Iossifov, et al.

  3. Replication of standardized ADOS domain scores in the Simons Simplex Collection.

    Autism Res., September 30, 2015

    Hus Bal V. and C. Lord

  4. Structural gray matter differences during childhood development in autism spectrum disorder: A multimetric approach.

    Pediatr. Neurol., September 30, 2015

    Foster N.E., Doyle-Thomas K.A., Tryfon A., Ouimet T., E. Anagnostou, Evans A.C., et al.

  5. 16p11.2 deletion syndrome mice display sensory and ultrasonic vocalization deficits during social interactions.

    Autism Res., September 30, 2015

    Yang M., Mahrt E.J., Lewis F., Foley G., Portmann T., R. Dolmetsch, et al.

  6. De novo truncating variants in the AHDC1 gene encoding the AT-hook DNA-binding motif-containing protein 1 are associated with intellectual disability and developmental delay.

    Cold Spring Harb. Mol. Case Stud., September 30, 2015

    Yang H., Douglas G., Monaghan K.G., Retterer K., Cho M.T., Escobar L.F., et al.

  7. The tumor suppressor p53 guides GluA1 homeostasis through Nedd4-2 during chronic elevation of neuronal activity.

    J. Neurochem., September 30, 2015

    Jewett K.A., Zhu J., and N. Tsai

  8. Eye-tracking measurements of language processing: Developmental differences in children at high risk for ASD.

    J. Autism Dev. Disord., September 30, 2015

    Chita-Tegmark M., Arunachalam S., C. Nelson, and H. Tager-Flusberg

  9. Atypical processing of voice sounds in infants at risk for autism spectrum disorder.

    Cortex, September 30, 2015

    Blasi A., Lloyd-Fox S., Sethna V., Brammer M.J., Mercure E., Murray L., et al.

  10. Characterizing autism spectrum disorders by key biochemical pathways.

    Front. Neurosci., September 23, 2015

    Subramanian M., Timmerman C.K., Schwartz J.L., Pham D.L., and M. Meffert

  11. Insights into autism spectrum disorder genomic architecture and biology from 71 risk loci.

    Neuron, September 22, 2015

    S. Sanders, X. He, A. Willsey, Ercan-Sencicek A.G., K. Samocha, A. E. Çiçek, et al.

  12. Sex differences in structural organization of motor systems and their dissociable links with repetitive/restricted behaviors in children with autism.

    Mol. Autism, September 3, 2015

    Supekar K. and V. Menon

  13. Mutations in SPATA5 are associated with microcephaly, intellectual disability, seizures, and hearing loss.

    Am. J. Hum. Genet., September 2, 2015

    Tanaka A.J., Cho M.T., Millan F., Juusola J., Retterer K., Joshi C., et al.

  14. MeCP2 regulates the timing of critical period plasticity that shapes functional connectivity in primary visual cortex.

    Proc. Natl. Acad. Sci. USA., August 24, 2015

    Krishnan K., Wang B.S., Lu J., Wang L., Maffei A., Cang J., et al.

  15. Neuroligins sculpt cerebellar Purkinje-cell circuits by differential control of distinct classes of synapses.

    Neuron, August 18, 2015

    Zhang B., Chen L.Y., Liu X., Maxeiner S., Lee S.J., Gokce O., et al.

  16. Altered neuronal and circuit excitability in fragile X syndrome.

    Neuron, August 18, 2015

    A. Contractor, Klyachko V.A., and C. Portera-Cailliau

  17. Comprehensive analysis of the 16p11.2 deletion and null CNTNAP2 mouse models of autism spectrum disorder.

    PLoS One, August 13, 2015

    Brunner D., Kabitzke P., He D., Cox K., Thiede L., Hanania T., et al.

  18. An autism-linked mutation disables phosphorylation control of UBE3A.

    Cell, August 12, 2015

    J. Yi, Berrios J., Newbern J.M., Snider W.D., B. Philpot, Hahn K.M., et al.

  19. Symmetrical dose-dependent DNA-methylation profiles in children with deletion or duplication of 7q11.23.

    Am. J. Hum. Genet., August 5, 2015

    Strong E., Butcher D.T., Singhania R., C. Mervis, Morris C.A., De Carvalho D., et al.

  20. Mutations in DDX3X are a common cause of unexplained intellectual disability with gender-specific effects on Wnt signaling.

    Am. J. Hum. Genet., August 5, 2015

    Snijders Blok L., Madsen E., Juusola J., Gilissen C., Baralle D., Reijnders M.R., et al.

  21. Age-related sperm DNA methylation changes are transmitted to offspring and associated with abnormal behavior and dysregulated gene expression.

    Mol. Psychiatry, July 31, 2015

    Milekic M.H., Xin Y., O'Donnell A., Kumar K.K., Bradley-Moore M., Malaspina D., et al.

  22. Abnormal auditory and language pathways in children with 16p11.2 deletion.

    Neuroimage Clin., July 31, 2015

    Berman J.I., Chudnovskaya D., Blaskey L., Kuschner E., P. Mukherjee, S. Nagarajan, et al.

  23. Preliminary evidence of neuropathology in nonhuman primates prenatally exposed to maternal immune activation.

    Brain Behav. Immun., July 31, 2015

    Weir R.K., Forghany R., Smith S.E., P. Patterson, K. McAllister, Schumann C.M., et al.

  24. First glimpses of the neurobiology of autism spectrum disorder.

    Curr. Opin. Genet. Dev., July 31, 2015

    S. Sanders

  25. Systems biology and gene networks in neurodevelopmental and neurodegenerative disorders.

    Nat. Rev. Genet., July 31, 2015

    Parikshak N.N., M. Gandal, and D. Geschwind

  26. Immune mediators in the brain and peripheral tissues in autism spectrum disorder.

    Nat. Rev. Neurosci., July 31, 2015

    Estes M.L. and K. McAllister

  27. Mutations in SLC1A4, encoding the brain serine transporter, are associated with developmental delay, microcephaly and hypomyelination.

    J. Med. Genet., July 31, 2015

    Damseh N., Simonin A., Jalas C., Picoraro J.A., Shaag A., Cho M.T., et al.

  28. A computational perspective on autism.

    Proc. Natl. Acad. Sci. USA, July 27, 2015

    Rosenberg A. and Patterson J.S.

  29. Modulation of mu attenuation to social stimuli in children and adults with 16p11.2 deletions and duplications.

    J. Neurodev. Disord., July 24, 2015

    Hudac C.M., Kresse A., Aaronson B., DesChamps T.D., S. Webb, and R. Bernier

  30. Arginine vasopressin is a blood-based biomarker of social functioning in children with autism.

    PLoS One, July 21, 2015

    Carson D.S., Garner J.P., Hyde S.A., Libove R.A., Berquist S.W., Hornbeak K.B., et al.

  31. FOXG1-dependent dysregulation of GABA/glutamate neuron differentiation in autism spectrum disorders.

    Cell, July 15, 2015

    Mariani J., G. Coppola, Zhang P., A. Abyzov, Provini L., Tomasini L., et al.

  32. Functional connectivity hubs of the mouse brain.

    Neuroimage, July 14, 2015

    Liska A., Galbusera A., Schwarz A.J., and A. Gozzi

  33. PTEN mutations alter brain growth trajectory and allocation of cell types through elevated beta-catenin signaling.

    J. Neurosci., July 14, 2015

    Chen Y., Huang W.C., Séjourné J., Clipperton-Allen A.E., and D. Page

  34. Cerebellar associative sensory learning defects in five mouse autism models.

    Elife, July 8, 2015

    Kloth A.D., Badura A., Li A., Cherskov A., Connolly S.G., Giovannucci A., et al.

  35. Targeted massively parallel sequencing of autism spectrum disorder-associated genes in a case control cohort reveals rare loss-of-function risk variants.

    Mol. Autism, July 6, 2015

    Griswold A.J., Dueker N.D., Van Booven D., Rantus J.A., Jaworski J.M., Slifer S.H., et al.

  36. Brain genomics superstruct project initial data release with structural, functional, and behavioral measures.

    Sci. Data, July 6, 2015

    Holmes A.J., Hollinshead M.O., O'Keefe T.M., Petrov V.I., Fariello G.R., Wald L.L., et al.

  37. Sex differences in cortical volume and gyrification in autism.

    Mol. Autism, July 3, 2015

    Schaer M., Kochalka J., Padmanabhan A., Supekar K., and V. Menon

  38. Paired-duplication signatures mark cryptic inversions and other complex structural variation.

    Am. J. Hum. Genet., July 1, 2015

    Brand H., Collins R.L., Hanscom C., Rosenfeld J.A., Pillalamarri V., Stone M.R., et al.

  39. Altered corpus callosum morphology associated with autism over the first 2 years of life.

    Brain, June 30, 2015

    Wolff J.J., Gerig G., Lewis J.D., Soda T., Styner M.A., Vachet C., et al.

  40. In tribute to Bob Blanchard: Divergent behavioral phenotypes of 16p11.2 deletion mice reared in same-genotype versus mixed-genotype cages.

    Physiol. Behav., June 30, 2015

    Yang M., Lewis F., Foley G., and J. Crawley

  41. Shortened telomeres in families with a propensity to autism.

    J. Am. Acad. Child Adolesc. Psychiatry, June 30, 2015

    C. Nelson, Varcin K.J., Coman N.K., DeVivo I., and H. Tager-Flusberg

  42. Children with 7q11.23 duplication syndrome: Psychological characteristics.

    Am. J. Med. Genet. A, June 30, 2015

    C. Mervis, Klein-Tasman B.P., Huffman M.J., Velleman S.L., Pitts C.H., Henderson D.R., et al.

  43. Modeling a model: Mouse genetics, 22q11.2 deletion syndrome, and disorders of cortical circuit development.

    Prog. Neurobiol., June 30, 2015

    Meechan D.W., T. Maynard, Tucker E.S., Fernandez A., Karpinski B.A., Rothblat L.A., et al.

  44. Inactivating mutations in MFSD2A required for omega-3 fatty acid transport in brain, cause a lethal microcephaly syndrome.

    Nat. Genet., June 30, 2015

    Guemez-Gamboa A., Nguyen L.N., Yang H., Zaki M.S., Kara M., Ben-Omran T., et al.

  45. Early sex differences are not autism-specific: A Baby Siblings Research Consortium (BSRC) study.

    Mol. Autism, June 3, 2015

    Messinger D.S., Young G.S., S. Webb, Ozonoff S., Bryson S.E., Carter A., et al.

  46. Inside-out radial migration facilitates lineage-dependent neocortical microcircuit assembly.

    Neuron, June 2, 2015

    He S., Li Z., Ge S., Yu Y.C., and S. Shi

  47. Excess of rare, inherited truncating mutations in autism.

    Nat. Genet., May 31, 2015

    Krumm N., Turner T.N., Baker C., Vives L., Mohajeri K., Witherspoon K., et al.

  48. Neural variability: Friend or foe?

    Trends Cogn. Sci., May 31, 2015

    I. Dinstein and M. Behrmann

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