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Simons Foundation
Simons Foundation

Autism Research Initiative (SFARI)

  • Funding

    Explore open funding opportunities for autism research.

    Funding Opportunities

    Early Career Awards

    • Fellows to Faculty Award
    • Shenoy Undergraduate Research Fellowship in Neuroscience (SURFiN)

    Investigator Awards

    • New Ideas

    Symposia & Travel Awards

    • Conferences & Courses Award

    Shared Programs

    • Pivot Fellowship
    • Simons Society of Fellows

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    • Open Funding Opportunities
    • Policies & Procedures
    • Instructional Videos
    • Past Funded Work
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    SFARI has supported over 750 investigators studying autism-related research.

    Research Highlights

    Research

    • SFARI Investigators
    • Funded Projects
    • Publications

    Data Access & Tools

    • SFARI Base
    • SFARI Gene

    Centers & Initiatives

    • Simons Center for the Social Brain
    • Simons Initiative for the Developing Brain

    Collaborations & Consortia

    • SFARI Sex Differences
    • Autism Rat Models Consortium
  • Resources

    Access data, biospecimens and participant cohorts through SFARI Base.

    SFARI Base

    Cohorts & Tissue Banks

    • SPARK
    • Simons Searchlight
    • Simons Simplex Collection
    • Autism BrainNet
    • Autism Inpatient Collection

    Other Resources

    • Animal Models
    • Biospecimens
    • Research Match

    Data Access & Tools

    • SFARI Base
    • SFARI Gene
    • SFARI Genomes Browser
    • Genotypes & Phenotypes in Families
  • News

    See the latest news and updates from SFARI.

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    SFARI’s mission is to advance the basic science of autism and related neurodevelopmental disorders.

    About SFARI

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Autism Research Initiative (SFARI) Research

Research: Funded Publications

Explore publications and preprints from SFARI-funded investigators and researchers using SFARI-supported data and resources.

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Results

  1. In vivo interrogation of gene function in the mammalian brain using CRISPR-Cas9.

    Nat. Biotechnol., December 31, 2014

    Swiech L., Heidenreich M., Banerjee A., Habib N., Y. Li, Trombetta J., et al.

  2. Genetic background modulates impaired excitability of inhibitory neurons in a mouse model of Dravet syndrome.

    Neurobiol. Dis., December 31, 2014

    Rubinstein M., Westenbroek R.E., Yu F.H., Jones C.J., Scheuer T., and W. Catterall

  3. From de novo mutations to personalized therapeutic interventions in autism.

    Annu. Rev. Med., December 31, 2014

    Brandler W.M. and J. Sebat

  4. A highly conserved program of neuronal microexons is misregulated in autistic brains.

    Cell, December 17, 2014

    Irimia M., Weatheritt R.J., Ellis J.D., Parikshak N.N., Gonatopoulos-Pournatzis T., Babor M., et al.

  5. An AUTS2-polycomb complex activates gene expression in the CNS.

    Nature, December 17, 2014

    Gao Z., Lee P., Stafford J.M., von Schimmelmann M., Schaefer A., and D. Reinberg

  6. Transcriptome analysis reveals dysregulation of innate immune response genes and neuronal activity-dependent genes in autism.

    Nat. Commun., December 9, 2014

    Gupta S., Ellis S.E., Ashar F.N., Moes A., Bader J.S., Zhan J., et al.

  7. Biallelic truncating mutations in FMN2, encoding the actin-regulatory protein formin 2, cause nonsyndromic autosomal-recessive intellectual disability.

    Am. J. Hum. Genet., December 3, 2014

    Law R., Dixon-Salazar T., Jerber J., Cai N., Abbasi A.A., Zaki M.S., et al.

  8. NPAS1 represses the generation of specific subtypes of cortical interneurons.

    Neuron, December 2, 2014

    Stanco A., Pla R., Vogt D., Chen Y., Mandal S., Walker J., et al.

  9. MET receptor tyrosine kinase controls dendritic complexity, spine morphogenesis, and glutamatergic synapse maturation in the hippocampus.

    J. Neurosci., December 2, 2014

    S. Qiu, Lu Z., and P. Levitt

  10. A multi-rater study on being teased among children/adolescents with autism spectrum disorder (ASD) and their typically developing siblings.

    Focus Autism Other Dev. Disabl., December 1, 2014

    Nowell K.P., Brewton C.M., and R. Goin-Kochel

  11. Topoisomerase 1 inhibition reversibly impairs synaptic function.

    Proc. Natl. Acad. Sci. USA, December 1, 2014

    Mabb A.M., Kullmann P.H., Twomey M.A., Miriyala J., B. Philpot, and M. Zylka

  12. Eating in the absence of hunger but not loss of control behaviors are associated with 16p11.2 deletions.

    Obesity (Silver Spring), November 30, 2014

    Gill R., Chen Q., D'Angelo D., and W. Chung

  13. Recurrent de novo mutations implicate novel genes underlying simplex autism risk.

    Nat. Commun., November 23, 2014

    B. O'Roak, H. Stessman, Boyle E.A., Witherspoon K.T., Martin B., C. Lee, et al.

  14. Cerebellar plasticity and motor learning deficits in a copy-number variation mouse model of autism.

    Nat. Commun., November 23, 2014

    Piochon C., Kloth A.D., Grasselli G., Titley H.K., Nakayama H., Hashimoto K., et al.

  15. 16p11.2 600 kb duplications confer risk for typical and atypical rolandic epilepsy.

    Hum. Mol. Genet., November 14, 2014

    Reinthaler E.M., Lal D., Lebon S., Hildebrand M.S., Dahl H.H., Regan B.M., et al.

  16. The contribution of de novo coding mutations to autism spectrum disorder.

    Nature, November 12, 2014

    I. Iossifov, B. O'Roak, S. Sanders, Ronemus M., Krumm N., Levy D., et al.

  17. Gut microbes and the brain: Paradigm shift in neuroscience.

    J. Neurosci., November 11, 2014

    Mayer E.A., Knight R., S. Mazmanian, Cryan J.F., and Tillisch K.

  18. Deterministic progenitor behavior and unitary production of neurons in the neocortex.

    Cell, November 5, 2014

    Gao P., Postiglione M.P., Krieger T.G., Hernandez L., Wang C., Han Z., et al.

  19. Dosage changes of a segment at 17p13.1 lead to intellectual disability and microcephaly as a result of complex genetic interaction of multiple genes.

    Am. J. Hum. Genet., November 5, 2014

    Carvalho C.M., Vasanth S., Shinawi M., Russell C., Ramocki M.B., Brown C.W., et al.

  20. Repetitive behavior in 12-month-olds later classified with autism spectrum disorder.

    J. Am. Acad. Child Adolesc. Psychiatry, October 31, 2014

    J. Elison, Wolff J.J., Reznick J.S., K. Botteron, Estes A.M., Gu H., et al.

  21. The association between epilepsy and autism symptoms and maladaptive behaviors in children with autism spectrum disorder.

    Autism, October 31, 2014

    Viscidi E.W., Johnson A.L., S. Spence, Buka S.L., E. Morrow, and Triche E.W.

  22. Psychotropic medication use among children with autism spectrum disorders within the Simons Simplex Collection: Are core features of autism spectrum disorder related?

    Autism, October 31, 2014

    Mire S.S., Nowell K.P., Kubiszyn T., and R. Goin-Kochel

  23. The construct of the multisensory temporal binding window and its dysregulation in developmental disabilities.

    Neuropsychologia, October 31, 2014

    M. Wallace and Stevenson R.A.

  24. Decoding neural transcriptomes and epigenomes via high-throughput sequencing.

    Nat. Neurosci., October 31, 2014

    Shin J., G. Ming, and H. Song

  25. Environmental enrichment modulates 5-hydroxymethylcytosine dynamics in hippocampus.

    Genomics, October 31, 2014

    Irier H., Street R.C., Dave R., Lin L., Cai C., Davis T.H., et al.

  26. Reducing indel calling errors in whole genome and exome sequencing data.

    Genome Med., October 27, 2014

    Fang H., Wu Y., Narzisi G., O'Rawe J.A., Barrón L.T., Rosenbaum J., et al.

  27. Facilitated sequence counting and assembly by template mutagenesis.

    Proc. Natl. Acad. Sci. USA, October 27, 2014

    Levy D. and M. Wigler

  28. Autism spectrum disorder severity reflects the average contribution of de novo and familial influences.

    Proc. Natl. Acad. Sci. USA, October 20, 2014

    E. Robinson, K. Samocha, Kosmicki J.A., McGrath L., Neale B.M., Perlis R.H., et al.

  29. CHD8 regulates neurodevelopmental pathways associated with autism spectrum disorder in neural progenitors.

    Proc. Natl. Acad. Sci. USA, October 20, 2014

    Sugathan A., Biagioli M., Golzio C., Erdin S., Blumenthal I., Manavalan P., et al.

  30. De novo insertions and deletions of predominantly paternal origin are associated with autism spectrum disorder.

    Cell Rep., October 8, 2014

    Dong S., Walker M.F., Carriero N.J., DiCola M., A. Willsey, Ye A.Y., et al.

  31. CRISPR-CAS9 knockin mice for genome editing and cancer modeling.

    Cell, October 8, 2014

    Platt R.J., Chen S., Zhou Y., Yim M.J., Swiech L., Kempton H.R., et al.

  32. GammaCaMKII shuttles Ca2+/CaM to the nucleus to trigger CREB phosphorylation and gene expression.

    Cell, October 8, 2014

    Ma H., Groth R.D., Cohen S.M., Emery J.F., B. Li, Hoedt E., et al.

  33. An open-source toolbox for automated phenotyping of mice in behavioral tasks.

    Front. Behav. Neurosci., October 7, 2014

    Patel T.P., Gullotti D.M., Hernandez P., W. O'Brien, Capehart B.P., Morrison B., et al.

  34. Cryptic and complex chromosomal aberrations in early-onset neuropsychiatric disorders.

    Am. J. Hum. Genet., October 1, 2014

    Brand H., Pillalamarri V., Collins R.L., Eggert S., O'Dushlaine C., Braaten E.B., et al.

  35. Brief report: Impact of child problem behaviors and parental broad autism phenotype traits on substance use among parents of children with ASD.

    J. Autism Dev. Disord., September 30, 2014

    Wade J.L., Cox N.B., Reeve R.E., and Hull M.

  36. Accurate de novo and transmitted indel detection in exome-capture data using microassembly.

    Nat. Methods, September 30, 2014

    Narzisi G., O'Rawe J.A., I. Iossifov, Fang H., Lee Y.H., Wang Z., et al.

  37. Expression of the broad autism phenotype in simplex autism families from the Simons Simplex Collection.

    J. Autism Dev. Disord., September 30, 2014

    Davidson J., R. Goin-Kochel, L. Green Snyder, Hundley R.J., Z. Warren, and Peters S.U.

  38. Neural systems for cognitive reappraisal in children and adolescents with autism spectrum disorder.

    Dev. Cogn. Neurosci., September 30, 2014

    Pitskel N.B., Bolling D.Z., Kaiser M.D., K. Pelphrey, and Crowley M.J.

  39. Coregistering functional near-infrared spectroscopy with underlying cortical areas in infants.

    Neurophotonics, September 30, 2014

    Lloyd-Fox S., Richards J.E., Blasi A., D. Murphy, Elwell C.E., and M. Johnson

  40. A novel ribosomopathy caused by dysfunction of RPL10 disrupts neurodevelopment and causes X-linked microcephaly in humans.

    Genetics, September 30, 2014

    Brooks S.S., Wall A.L., Golzio C., Reid D.W., Kondyles A., Willer J.R., et al.

  41. DNA modifications in the mammalian brain.

    Philos. Trans. R. Soc. Lond. B. Biol. Sci., September 25, 2014

    Shin J., G. Ming, and H. Song

  42. Progressive increase in mtDNA 3243A>G heteroplasmy causes abrupt transcriptional reprogramming.

    Proc. Natl. Acad. Sci. USA, September 22, 2014

    Picard M., Zhang J., Hancock S., Derbeneva O., Golhar R., Golik P., et al.

  43. Maturation of cortical circuits requires semaphorin 7A.

    Proc. Natl. Acad. Sci. USA, September 22, 2014

    Carcea I., Patil S.B., Robison A.J., Mesias R., Huntsman M.M., R. Froemke, et al.

  44. Interactions of innate and adaptive immunity in brain development and function.

    Brain Res., September 17, 2014

    Filiano A.J., Gadani S.P., and J. Kipnis

  45. De novo TBR1 mutations in sporadic autism disrupt protein functions.

    Nat. Commun., September 17, 2014

    Deriziotis P., B. O'Roak, Graham S.A., Estruch S.B., Dimitropoulou D., R. Bernier, et al.

  46. Loss of WDFY3 in mice alters cerebral cortical neurogenesis reflecting aspects of the autism pathology.

    Nat Commun., September 7, 2014

    Orosco L.A., Ross A.P., Cates S.L., Scott S.E., Wu D., Sohn J., et al.

  47. Electrophysiological measures of low-level vision reveal spatial processing deficits and hemispheric asymmetry in autism spectrum disorder.

    J. Vis., September 4, 2014

    Pei F., Baldassi S., and Norcia A.M.

  48. Loss of mTOR-dependent macroautophagy causes autistic-like synaptic pruning deficits

    Neuron, September 3, 2014

    G. Tang, Gudsnuk K., Kuo S.H., Cotrina M.L., Rosoklija G., Sosunov A., et al.

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