Publications

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  1. EMPress Enables Tree-Guided, Interactive, and Exploratory Analyses of Multi-omic Data Sets

    mSystems, March 16, 2021

    K. Cantrell, et al.

  2. Alternating sources of perisomatic inhibition during behavior.

    Neuron, March 16, 2021

    Dudok B., Klein P.M., Hwaun E., Lee B.R., Yao Z., Fong O., et al.

  3. The Atacama Cosmology Telescope: Combined kinematic and thermal Sunyaev-Zel'dovich measurements from BOSS CMASS and LOWZ halos

    PRD, arXiv:2009.05557, March 15, 2021

    Emmanuel Schaan, et al.

  4. The Atacama Cosmology Telescope: Modeling the Gas Thermodynamics in BOSS CMASS galaxies from Kinematic and Thermal Sunyaev-Zel'dovich Measurements

    PRD, arXiv:2009.05558, March 15, 2021

    Stefania Amodeo, et al.

  5. Planckian Metal at a Doping-Induced Quantum Critical Point

    arXiv:2103.08607, 2021

    P. Dumitrescu, N. Wentzell, A. Georges, and O. Parcollet

  6. An automated framework for efficiently designing deep convolutional neural networks in genomics

    Nature Machine Intelligence, March 15, 2021

    Z. Zhang, C. Park, C. Theesfeld, and O. Troyanskaya

  7. Bacterial activity hinders particle sedimentation

    arXiv, March 15, 2021

    J. Singh, A. Patteson, B. Maldonado, P. Purohit, and P. Arratia

  8. Sex differences in brain development in fetuses and infants who are at low or high likelihood for autism.

    medRxiv, March 11, 2021

    Villa L.M., Hampton S., Aydin E., Tait R., Leming M.J., Tsompanidis A., et al.

  9. Synaptic plasticity as Bayesian inference

    Nat Neurosci, March 11, 2021

    L Aitchison, J Jegminat, JA Menendez, JP Pfister, A. Pouget, and P. Latham

  10. Protocol for transgenerational learned pathogen avoidance behavior assays in Caenorhabditis elegans

    STAR Protoc, March 10, 2021

    RS Moore, R Kaletsky, and C. Murphy

  11. More data or more parameters? Investigating the effect of data structure on generalization

    arxiv:2103.05524, March 9, 2021

    Stéphane d'Ascoli, M. Gabrié, Levent Sagun, and G. Biroli

  12. Children with autism spectrum disorder show altered functional connectivity and abnormal maturation trajectories in response to inverted faces.

    Autism Res., March 9, 2021

    Mamashli F., Kozhemiako N., Khan S., Nunes A.S., McGuiggan N.M., Losh A., et al.

  13. BARcode DEmixing through Non-negative Spatial Regression (BarDensr)

    PLoS Comput Biol, March 8, 2021

    S Chen, J Loper, X Chen, A Vaughan, A. Zador, and L. Paninski

  14. Functional genomics of inflamm-aging and immunosenescence

    Brief Funct Genomics, March 5, 2021

    Lu RJ, EK Wang, and B. Benayoun

  15. Limited Evidence for Sensory Prediction Error Responses in Visual Cortex of Macaques and Humans

    Cereb Cortex, March 4, 2021

    SS Solomon, H Tang, E Sussman, and A. Kohn

  16. Transcriptome analysis reveals the difference between "healthy" and "common" aging and their connection with age-related diseases

    Aging Cell, March 3, 2021

    L Zeng, J Yang, S Peng, J Zhu, B Zhang, Y. Suh, et al.

  17. Enhanced tunable second harmonic generation from twistable interfaces and vertical superlattices in boron nitride homostructures

    Science Advances, arxiv:https://advances.sciencemag.org/content/7/10/eabe8691.full.pdf, March 3, 2021

    Kaiyuan Yao, Nathan R. Finney, Jin Zhang, Samuel L. Moore, Lede Xian, Nicolas Tancogne-Dejean, et al.

  18. A Decade of Radial-velocity Monitoring of Vega and New Limits on the Presence of Planets

    AJ, arXiv:2101.08801, March 2, 2021

    Spencer A. Hurt, et al.

  19. Autobahn: Automorphism-based Graph Neural Nets

    arXiv e-prints, arxiv:2103.01710, March 2, 2021

    E. Thiede, W. Zhou, and . Kondor

  20. A new ionisation network and radiation transport module in PLUTO

    MNRAS, arXiv:2010.00457, March 1, 2021

    Kartick Chandra Sarkar, A. Sternberg, and Orly Gnat

  21. Constrained-path auxiliary-field quantum Monte Carlo for coupled electrons and phonons

    arxiv:2012.13473, March 1, 2021

    Joonho Lee, S. Zhang, and D. Reichman

  22. Improving the measurement of alexithymia in autistic adults: A psychometric investigation and refinement of the twenty-item Toronto Alexithymia Scale.

    Mol. Autism, March 1, 2021

    Williams Z.J. and Gotham K.O.

  23. Aliasing error of the exp \(β\sqrt{1-z^2}\) kernel in the nonuniform fast Fourier transform

    Applied and Computational Harmonic Analysis, arxiv:2001.09405, 2021

    A. Barnett

  24. Activation of the medial preoptic area (MPOA) ameliorates loss of maternal behavior in a Shank2 mouse model for autism.

    EMBO J., February 28, 2021

    Grabrucker S., Pagano J., Schweizer J., Urrutia-Ruiz C., Schön M., Thome K., et al.

  25. BAF subunit switching regulates chromatin accessibility to control cell cycle exit in the developing mammalian cortex.

    Genes Dev., February 28, 2021

    Braun S.M.G., Petrova R., Tang J., Krokhotin A., Miller E.L., Tang Y., et al.

  26. Towards robust and replicable sex differences in the intrinsic brain function of autism.

    Mol. Autism, February 28, 2021

    Floris D.L., Filho J.O.A., Lai M.-C., Giavasis S., Oldehinkel M., Mennes M., et al.

  27. The emerging role of chromatin remodelers in neurodevelopmental disorders: A developmental perspective.

    Cell Mol. Life Sci., February 28, 2021

    Mossink B., Negwer M., Schubert D., and N. Kasri

  28. Elevated polygenic burden for autism spectrum disorder is associated with the broad autism phenotype in mothers of individuals with autism spectrum disorder.

    Biol. Psychiatry, February 28, 2021

    Nayar K., Sealock J.M., Maltman N., Bush L., E. Cook, Davis L.K., et al.

  29. AMBIENT: Accelerated Convolutional Neural Network Architecture Search for Regulatory Genomics

    bioRxiv, February 27, 2021

    Z. Zhang, E. Cofer, and O. Troyanskaya

  30. An unsupervised method for identifying X-enriched stars directly from spectra: Li in LAMOST

    APJ, arXiv:2009.03920, February 26, 2021

    Adam Wheeler, M. Ness, and D. Hogg

  31. A fully kinetic model for orphan gamma-ray flares in blazars

    MNRAS, arXiv:2102.11770, February 26, 2021

    Emanuele Sobacchi, J. Nättilä, and Lorenzo Sironi

  32. Can Galaxy Evolution Mimic Cosmic Reionization?

    APJ, arXiv:2010.00023, February 25, 2021

    S. Hassan and Max Gronke

  33. Checkpointing with cp: the POSIX Shared Memory System

    arXiv:2102.13140, 2021

    L. Garrison, Daniel J. Eisenstein, and Nina A. Maksimova

  34. A randomization-based causal inference framework for uncovering environmental exposure effects on human gut microbiota

    bioRxiv:2021.02.24.432662, February 24, 2021

    Alice J Sommer, Annette Peters, Martina Rommel, Josef Cyrys, Harald Grallert, Dirk Haller, et al.

  35. Alfvén wave mode conversion in pulsar magnetospheres

    APJ, arXiv:2007.11504, February 23, 2021

    Y. Yuan, Y. Levin, Ashley Bransgrove, and S. Philippov

  36. Human geroprotector discovery by targeting the converging subnetworks of aging and age-related diseases

    Geroscience, February 23, 2021

    J Yang, S Peng, B Zhang, S Houten, E Schadt, J Zhu, et al.

  37. Distinct, dosage-sensitive requirements for the autism-associated factor CHD8 during cortical development.

    Mol. Autism, February 23, 2021

    Hurley S., Mohan C., Suetterlin P., Ellingford R., Riegman K.L.H., Ellegood J., et al.

  38. Nonlinear convergence boosts information coding in circuits with parallel outputs

    Proc Natl Acad Sci U S A, February 23, 2021

    GJ Gutierrez, F. Rieke, and ET Shea-Brown

  39. Mechanical Mechanisms of Chromosome Segregation

    Cells, February 22, 2021

    Maya I. Anjur-Dietrich, Colm P. Kelleher, and D. Needleman

  40. Mechanical Mechanisms of Chromosome Segregation

    Cells, February 22, 2021

    Maya I. Anjur-Dietrich, Colm P. Kelleher, and D. Needleman

  41. Independent generation of sequence elements by motor cortex

    Nat Neuro, February 22, 2021

    AJ Zimnik and M. Churchland

  42. Distributed chromatic processing at the interface between retina and brain in the larval zebrafish

    Curr Biol, February 19, 2021

    DA Guggiana Nilo, C Riegler, M Hübener, and F. Engert

  43. Effects of early geometric confinement on the transcriptomic profile of human cerebral organoids.

    bioRxiv, February 19, 2021

    Sen D., Voulgaropoulos A., and A. Keung

  44. Topography in the Bursting Dynamics of Entorhinal Neurons

    Cell Rep, February 18, 2021

    JS Bant, K Hardcastle, SA Ocko, and L. Giocomo

  45. CARPool: fast, accurate computation of large-scale structure statistics by pairing costly and cheap cosmological simulations

    MNRAS, arXiv:2009.08970, February 17, 2021

    Nicolas Chartier, B. Wandelt, Yashar Akrami, and F. Villaescusa-Navarro

  46. Cortical thickness across the lifespan: Data from 17,075 healthy individuals aged 3-90 years

    Hum Brain Mapp., February 17, 2021

    S Frangou, et al.

  47. Cell-to-cell variation in gene expression and the aging process

    Geroscience, February 17, 2021

    AR Mendenhall, GM Martin, M Kaeberlein, and R. Anderson

  48. Extracting the dynamics of behavior in sensory decision-making experiments

    Neuron, February 17, 2021

    NA Roy, JH Bak, International Brain Laboratory, A Akrami, C. Brody, and J. Pillow