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  1. CaImAn an open source tool for scalable calcium imaging data analysis.

    Publication
    Advances in fluorescence microscopy enable monitoring larger brain areas in-vivo with finer time resolution. The resulting data rates require reproducible analysis pipelines that are reliable, fully automated …

  2. Efficient and accurate extraction of in vivo calcium signals from microendoscopic video data.

    Publication
    In vivo calcium imaging through microendoscopic lenses enables imaging of previously inaccessible neuronal populations deep within the brains of freely moving animals. However, it is computationally challenging to …

  3. NoRMCorre: An online algorithm for piecewise rigid motion correction of calcium imaging data

    Publication

  4. OnACID: Online Analysis of Calcium Imaging Data in Real Time, Advances

    Publication
    Optical imaging methods using calcium indicators are critical for monitoring the activity of large neuronal populations in vivo. Imaging experiments typically generate a large amount of data that …

  5. Automated gesture tracking in head-fixed mice

    Publication
    Background The preparation consisting of a head-fixed mouse on a spherical or cylindrical treadmill offers unique advantages in a variety of experimental contexts. Head fixation provides the …

  6. Cerebellar granule cells acquire a widespread predictive feedback signal during motor learning

    Publication
    Cerebellar granule cells, which constitute half the brain's neurons, supply Purkinje cells with contextual information necessary for motor learning, but how they encode this information is unknown …