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  • Founded by Jim and Marilyn Simons, we’re a private philanthropy advancing mathematics and basic science.

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Bringing people and ideas together to fund, conduct, and share transformative science.

Our grants advance knowledge and strengthen connections between science and society.

Discover the latest news, research, and updates.

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We convene scientists, mathematicians, and thinkers to share ideas and explore new questions.

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Founded by Jim and Marilyn Simons, we’re a private philanthropy advancing mathematics and basic science.

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The Flatiron Institute is a research center that uses computational science to advance fields like physics, biology, and astronomy.

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Featured

Dissecting mechanisms of hyperarousal in autism and related disorders using the Simons Sleep Project

Funded Work

Gravity Follows Newton’s and Einstein’s Rules, Even at Cosmic Scales

April 15, 2026

Scientists Capture Superconductivity’s ‘Dancing Pairs’ for First Time, Filling Gap in Decades-Old Theory

April 15, 2026

How SURFiN Fellowships Jump-Started These 3 Neuroscience Students’ STEM Careers

March 18, 2026

Results

  1. Functional relationships between recessive inherited genes and genes with de novo variants in autism spectrum disorder.

    Publication
  2. Chd8 haploinsufficiency impairs early brain development and protein homeostasis later in life.

    Publication
  3. Statistical methods for dissecting interactions between brain areas

    Publication
    The brain is composed of many functionally distinct areas. This organization supports distributed processing, and requires the coordination of signals across areas. Our understanding of how populations of …
  4. Glymphatic failure as a final common pathway to dementia

    Publication
    Sleep is evolutionarily conserved across all species, and impaired sleep is a common trait of the diseased brain. Sleep quality decreases as we age, and disruption of the …
  5. Robust parallel decision-making in neural circuits with nonlinear inhibition

    Publication
    An elemental computation in the brain is to identify the best in a set of options and report its value. It is required for inference, decision-making, optimization …
  6. Regional Embedding Enables High-Level Quantum Chemistry for Surface Science

    Publication
    Compared to common density functionals, ab initio wave function methods can provide greater reliability and accuracy, which could prove useful when modeling adsorbates or defects of otherwise periodic …
  7. Sr\(_2\)MoO\(_4\) and Sr\(_2\)RuO\(_4\): Disentangling the Roles of Hund's and van Hove Physics

    Publication
    Sr
  8. The CAMELS project: Cosmology and Astrophysics with MachinE Learning Simulations

    Publication
    We present the Cosmology and Astrophysics with MachinE Learning Simulations --CAMELS-- project. CAMELS is a suite of 4,233 cosmological simulations of …
  9. An Open Resource for Non-human Primate Optogenetics

    Publication
    Optogenetics has revolutionized neuroscience in small laboratory animals, but its effect on animal models more closely related to humans, such as non-human primates (NHPs), has been mixed …
  10. Sex difference in Alzheimer's disease: An updated, balanced and emerging perspective on differing vulnerabilities

    Publication
    … trials to date.
  11. Psychiatric and medical profiles of autistic adults in the SPARK cohort.

    Publication
  12. A prefrontal-paraventricular thalamus circuit requires juvenile social experience to regulate adult sociability in mice.

    Publication
  13. Reflections on the past two decades of neuroscience.

    Publication
  14. A comparative study of suicidality and its association with emotion regulation impairment in large ASD and US census-matched samples.

    Publication
  15. Biological sex does not predict glymphatic influx in healthy young, middle aged or old mice

    Publication
    Sexual dimorphism is evident in brain structure, size, and function throughout multiple species. Here, we tested whether cerebrospinal fluid entry into the glymphatic system, a network of perivascular …
  16. Large-scale targeted sequencing identifies risk genes for neurodevelopmental disorders.

    Publication
  17. Acute and repeated intranasal oxytocin differentially modulate brain-wide functional connectivity.

    Publication
  18. Abnormal auditory mismatch fields in children and adolescents with 16p11.2 deletion and 16p11.2 duplication.

    Publication
  19. Genomics at cellular resolution: Insights into cognitive disorders and their evolution.

    Publication
  20. Anatomically segregated basal ganglia pathways allow parallel behavioral modulation

    Publication
    In the basal ganglia (BG), anatomically segregated and topographically organized feedforward circuits are thought to modulate multiple behaviors in parallel. Although topographically arranged BG circuits have been described …
  21. Anatomically segregated basal ganglia pathways allow parallel behavioral modulation

    Publication
    In the basal ganglia (BG), anatomically segregated and topographically organized feedforward circuits are thought to modulate multiple behaviors in parallel. Although topographically arranged BG circuits have been described …
  22. Identification of new therapeutic targets in CRLF2-overexpressing B-ALL through discovery of TF-gene regulatory interactions

    Publication
    Although genetic alterations are initial drivers of disease, aberrantly activated transcriptional regulatory programs are often responsible for the maintenance and progression of cancer. CRLF2-overexpression in B-ALL …
  23. Evaluating two common strategies for research participant recruitment into autism studies: Observational study.

    Publication
  24. Integrative genomics identifies a convergent molecular subtype that links epigenomic with transcriptomic differences in autism.

    Publication
  25. Discriminatory Power of Combinatorial Antigen Recognition in Cancer T Cell Therapies

    Publication
    Precise discrimination of tumor from normal tissues remains a major roadblock for therapeutic efficacy of chimeric antigen receptor (CAR) T cells. Here, we perform a comprehensive in silico …
  26. A causal study of bumetanide on a marker of excitatory-inhibitory balance in the human brain.

    Publication
  27. Artificial Neural Networks for Neuroscientists: A Primer

    Publication
    Artificial neural networks (ANNs) are essential tools in machine learning that have drawn increasing attention in neuroscience. Besides offering powerful techniques for data analysis, ANNs provide a new …
  28. Cortico-cerebellar interactions during goal-directed behavior

    Publication
    Preparatory activity is observed across multiple interconnected brain regions before goal-directed movement. Preparatory activity reflects discrete activity states representing specific future actions. It is unclear how this …
  29. Stoichiometric interactions explain spindle dynamics and scaling across 100 million years of nematode evolution

    Publication
    The spindle shows remarkable diversity, and changes in an integrated fashion, as cells vary over evolution. Here, we provide a mechanistic explanation for variations in the first mitotic …
  30. Ultra-sharp pinnacles sculpted by natural convective dissolution

    Publication
    The evolution of landscapes, landforms, and other natural structures involves highly interactive physical and chemical processes that often lead to intriguing shapes and recurring motifs. Particularly intricate and …
  31. Neural stem cells direct axon guidance via their radial fiber scaffold.

    Publication
  32. Stripes, Antiferromagnetism, and the Pseudogap in the Doped Hubbard Model at Finite Temperature

    Publication
    The interplay between thermal and quantum fluctuations controls the competition between phases of matter in strongly correlated electron systems. We study finite-temperature properties of the strongly coupled …
  33. Bayesian inference for compact binary coalescences with BILBY: validation and application to the first LIGO–Virgo gravitational-wave transient catalogue

    Publication
    Gravitational waves provide a unique tool for observational astronomy. While the first LIGO--Virgo catalogue of gravitational-wave transients (GWTC-1) contains eleven signals from black hole and …
  34. Astraea: Predicting Long Rotation Periods with 27 Day Light Curves

    Publication
    The rotation periods of planet-hosting stars can be used for modeling and mitigating the impact of magnetic activity in radial velocity measurements and can help constrain the …
  35. Integrated VAC: A robust strategy for identifying eigenfunctions of dynamical operators

    Publication
    One approach to analyzing the dynamics of a physical system is to search for long-lived patterns in its motions. This approach has been particularly successful for molecular …
  36. Revealing the structure of pharmacobehavioral space through motion sequencing

    Publication
    Understanding how genes, drugs and neural circuits influence behavior requires the ability to effectively organize information about similarities and differences within complex behavioral datasets. Motion Sequencing (MoSeq) is …
  37. A convolutional neural network for common coordinate registration of high-resolution histology images

    Publication
    Registration of histology images from multiple sources is a pressing problem in large-scale studies of spatial -omics data. Researchers often perform “common coordinate registration,” akin to segmentation …
  38. Learning arbitrary stimulus-reward associations for naturalistic stimuli involves transition from learning about features to learning about objects

    Publication
    … for learning about reward value of all types of multi-dimensional stimuli.
  39. Demyelination induces selective vulnerability of inhibitory networks in multiple sclerosis.

    Publication
  40. A design framework for actively crosslinked filament networks

    Publication
    Living matter moves, deforms, and organizes itself. In cells this is made possible by networks of polymer filaments and crosslinking molecules that connect filaments to each other and …
  41. Assessing Goodness-of-Fit in Marked Point Process Models of Neural Population Coding via Time and Rate Rescaling

    Publication
    Marked point process models have recently been used to capture the coding properties of neural populations from multiunit electrophysiological recordings without spike sorting. These clusterless models have been …
  42. Learning probabilistic neural representations with randomly connected circuits

    Publication
    The brain represents and reasons probabilistically about complex stimuli and motor actions using a noisy, spike-based neural code. A key building block for such neural computations, as …
  43. Phenotypic subtyping and re-analysis of existing methylation data from autistic probands in simplex families reveal ASD subtype-associated differentially methylated genes and biological functions.

    Publication
  44. The Mind of a Mouse

    Publication
    Large scientific projects in genomics and astronomy are influential not because they answer any single question but because they enable investigation of continuously arising new questions from the …
  45. Dampening the Power of the Brain-When Aging Meets Cognition

    Publication
  46. Stimulus-specific hypothalamic encoding of a persistent defensive state

    Publication
    Persistent neural activity in cortical, hippocampal, and motor networks has been described as mediating working memory for transiently encountered stimuli1,2. Internal emotional states, such as fear, also …
  47. Association between sleep deficiencies with behavioral problems in autism spectrum disorder: subtle sex differences

    Publication
  48. Multitaper estimation on arbitrary domains

    Publication
    Multitaper estimators have enjoyed significant success in estimating spectral densities from finite samples using as tapers Slepian functions defined on the acquisition domain. Unfortunately, the numerical calculation of …
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