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Featured

Dissecting mechanisms of hyperarousal in autism and related disorders using the Simons Sleep Project

Funded Work

Gravity Follows Newton’s and Einstein’s Rules, Even at Cosmic Scales

April 15, 2026

Scientists Capture Superconductivity’s ‘Dancing Pairs’ for First Time, Filling Gap in Decades-Old Theory

April 15, 2026

How SURFiN Fellowships Jump-Started These 3 Neuroscience Students’ STEM Careers

March 18, 2026

Results

  1. Investigating cell-type-specific molecular pathology in autism

    Funded Work
    Genetic and phenotypic heterogeneity occurs in many diseases, including autism.
  2. Associative circuitry in Bcl11a/Ctip1 ASD mice: Growth cone proteomes and RNA

    Funded Work
    In this project, Jeffrey Macklis will directly investigate interhemispheric callosal projection neuron (CPN) axonal growth cone (GC) molecular machinery, abnormalities of CPN connectivity and dose-dependent direct effects …
  3. Understanding how ASD-risk mutations in the chromatin regulators Pogz and Suv420h1 affect cortical development

    Funded Work
    High confidence ASD (hcASD) genes encode proteins that regulate synapse formation, neuronal activity and transcription regulation, including chromatin regulation.
  4. Misregulation of striatal neuronal development in autism

    Funded Work
    Multiple behaviors disrupted in autism spectrum disorders (ASDs), including the integration of sensory stimuli and social interaction, are associated with the dysfunction of striatal synapses.
  5. Uncovering convergent autism synaptic endophenotypes and candidate drug treatments

    Funded Work
    A number of genetic mutations have been linked to an increased risk for autism spectrum disorder (ASD).
  6. Neural substrates of behavior and action selection in model organisms

    Funded Work
    Our group is helping Rafael Yuste’s lab to pioneer the use of Hydra vulgaris, a small, freshwater polyp that attaches itself to underwater surfaces in lakes, rivers …
  7. Theory of distributed persistent activity in large-scale brain circuits

    Funded Work
    Working memory, the ability to temporarily hold and manipulate pieces of information in our minds, is crucial for thinking and flexible behavior.
  8. The global genomic diversity of Prochlorococcus

    Funded Work
  9. The role of microbiomes in shaping the ecology and evolution of tropical forest ecosystems

    Funded Work
  10. Remapping across time, space and region

    Funded Work
    We take it for granted that we can distinguish similar events yet still group them together as being similar.
  11. Dissecting navigation and the general logic of episodic state computation

    Funded Work
    Imagine you are rowing a boat in a river.
  12. Sciences at Pioneer Works

    Funded Work
    A massive cultural center dedicated to experimentation, education and production across disciplines, housed in a converted warehouse in the Red Hook neighborhood of Brooklyn.
  13. Integrative approaches to understanding whole-brain computation

    Funded Work
    The human brain is composed of billions of neurons.
  14. The representation of internal state in the fly brain

    Funded Work
    Our interaction with the world is influenced by our internal state.
  15. Developmental changes in a mouse model of UBE3A hyperactivation

    Funded Work
    The cellular and developmental basis of autism spectrum disorder (ASD) still represents a significant gap in our knowledge of this developmental disorder.
  16. Brain imaging and visual processing study using arbaclofen to assess GABAB receptor activation in autism

    Funded Work
    Finding treatments for autism spectrum disorder (ASD) has been challenging because its etiology is so poorly understood.
  17. Structural biological studies of the soluble and membrane regions of KCC2

    Funded Work
    Imbalances in excitatory versus inhibitory postsynaptic signaling in the central nervous system (CNS) have been associated with autism spectrum disorders (ASD).
  18. USP9X: A master gene for neural development and autism

    Funded Work
    Autism spectrum disorder (ASD) is a major neurodevelopmental disorder, yet despite its prevalence and severity, the substantial genetic heterogeneity of ASD (>700 associated genes) has been a major …
  19. Interpreting de novo tandem repeat variants in ASD using genetic constraint

    Funded Work
    Approximately 30 percent of autism spectrum disorder (ASD) cases can be explained by rare de novo variants disrupting gene function.
  20. BEAM

    Funded Work
    Math organization creating pathways for students from low-income and historically marginalized communities to become scientists, mathematicians, engineers and computer scientists.
  21. Fever and the brain in autism: Temperature versus inflammatory effects

    Funded Work
    Autism spectrum disorder (ASD) is seen as a collection of disorders that is predominantly developmental in nature and largely genetic in origin.
  22. Simons Initiative for the Developing Brain

    Funded Work
    The Simons Initiative for the Developing Brain (SIDB) was established in 2017.
  23. Neural correlates of sensory hypersensitivity in autism spectrum disorder

    Funded Work
    Most individuals with autism experience at least one form of hypersensitivity from the five senses.
  24. Rebooting the Gut Microbial Ecosystem Using Bacterial Dueling

    Funded Work
  25. Improved automatic analysis of LENA home recordings

    Funded Work
    It has been established that children and adolescents with autism spectrum disorder (ASD) show a wide range of abilities to use spoken words and establish interactive conversations.
  26. A novel method for revealing the shared molecular pathways of autism genes

    Funded Work
    Autism spectrum disorder (ASD) afflicts 1 in 68 individuals in the United States and represents a substantial emotional and financial burden on our society.
  27. Learning-related activity in autism

    Funded Work
    Autism spectrum disorders (ASDs) are characterized by a variety of behavioral deficits including perseverative behavior.
  28. Sleep EEG abnormalities in toddlers with regressive or classical autism

    Funded Work
    Very little is known about the potential neural abnormalities that exist in the initial stages of autism development.
  29. Expression and characterization of the neuron-specific potassium chloride cotransporter, KCC2

    Funded Work
    A number of studies have lead to the suggestion that disruptions to chloride homeostasis play a role in a variety of neurological and neurodevelopmental disorders.
  30. Synthetic infrared nanosensors for real-time monitoring of oxytocin release

    Funded Work
    Little is known or understood about the molecular mechanisms responsible for social cognitive development and the diseases associated with its aberrations, such as autism spectrum disorder (ASD).
  31. High-throughput functional annotation of human SCN2A variants

    Funded Work
    Whole-exome sequencing studies utilizing samples from the Simons Simplex Collection and other autism cohorts have identified multiple variants in SCN2A, a gene encoding a neuronal voltage-gated …
  32. Spatiotemporal dissection of UBE3A expression with engineered human cerebral organoids

    Funded Work
    Several key barriers exist to unraveling the mechanistic etiologies of autism spectrum disorder (ASD).
  33. Dissecting inhibitory microcircuits during learning in a mouse model of Dravet syndrome

    Funded Work
    Autism spectrum disorders (ASDs) encompass a number of disorders that are typified by communication deficits, reduced behavioral flexibility, poor socialization, learning disabilities and a tendency toward repetitive behaviors.
  34. Neurodevelopmental assessment of motor behavior in a mouse model of autism

    Funded Work
    Autism is a neurodevelopmental disorder, and sensorimotor disturbances are among the earliest signs of atypical development in autism, revealing themselves in early infancy.
  35. Identification of shared transcriptional profiles with three high-confidence autism mouse models

    Funded Work
    Genetic risks for autism are diverse and encompass mutations and copy number variations in hundreds of genes.
  36. Translational control by RBFOX1: Investigating its mechanisms and functions

    Funded Work
    Genetic analyses of copy-number variants, single-nucleotide variants and chromosomal translocations, as well as co-expression network analysis of postmortem brain tissue, have implicated the human RBFOX1 …
  37. Influence of Molecular Structure on Dynamics of Complex Reaction Networks

    Funded Work
    “What is life?” is a question that has occupied mankind for thousands of years.
  38. A biomarker of reduced GABAergic action for assessing neural alterations in autism

    Funded Work
    Autism is a neurodevelopmental disorder in which individuals display a range of challenges in social cognition, language and sensory perception.
  39. Neurobiological basis of connectivity deficits in autism

    Funded Work
    Neuroimaging studies have described altered structural and functional connectivity across brain regions of individuals with autism spectrum disorder (ASD).
  40. Canonical computations in autism

    Funded Work
    Hundreds of susceptibility genes have been identified for autism spectrum disorder (ASD), and many are related to synaptic function.
  41. A novel transcriptional cascade involved in brain overgrowth in autism

    Funded Work
    Anthony Wynshaw-Boris and his colleagues are investigating the hypothesis that a subset of individuals with autism spectrum disorders (ASD) (approximately 25-30 percent) display early brain overgrowth.
  42. FOXP1 orchestration of neuronal function in the striatum

    Funded Work
    The gene encoding the transcription factor FOXP1 is strongly implicated in the etiology of individuals with autism spectrum disorder (ASD) and of those with intellectual disability.
  43. Development of corticothalamic circuits of prefrontal cortex in mouse models of autism

    Funded Work
    Autism spectrum disorders (ASDs) represent a group of neurodevelopmental disorders for which the underlying etiologies are heterogeneous.
  44. Spatio-temporal gene discovery for autism spectrum disorder

    Funded Work
    Autism spectrum disorder (ASD) is a complex neurodevelopmental condition that is the result of interplay amongst hundreds of genes.
  45. Dissecting primary motor cortex circuit dysfunction in a mouse model of MeCP2 duplication syndrome

    Funded Work
    Motor dysfunction is common in autism.
  46. A somatic mechanism for autism phenotypic heterogeneity

    Funded Work
    The diagnostic dyad defining autism spectrum disorder (ASD) belies a tremendous phenotypic heterogeneity that remains a key challenge to diagnosis and treatment.
  47. Somatic mosaicism in autism spectrum disorders

    Funded Work
    Somatic mosaicism, or the emergence of variations in the sequence or structure of the genome of somatic cells, has been detected in both healthy individuals and individuals with …
  48. Autophagy pathway alterations in lymphocytes: Potential biomarkers for autism?

    Funded Work
    Components of the mammalian target of rapamycin (mTOR) signaling pathway are key players in the pathogenesis of autism spectrum disorder (ASD).
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