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Topic: Streaming flows in the fruit fly oocyte Abstract: In the cellular phenomena of cytoplasmic streaming, molecular motors carrying cargo along a network of microtubules entrain the surrounding …

Presenter: Daniel Berenberg, NYU Topic: Protein structure embeddings through contact map decomposition and convolution Abstract: Protein folds arise from a complex system of atomistic interactions in three dimensions …

Article review: Predicting 3d genome folding from DNA sequence

Noémie Globus is a high energy astrophysicist. She has a joint post-doctoral position at the Center for Cosmology and Particle Physics at the New York University and …

Speaker: Jingpeng Wu Topic: Comparing different approaches to EM segmentation, followed by a discussion of the pipeline for the wasp connectomics project

Topic: SARS-CoV-2 Viral Genomics and Host Receptor Networks

Speaker: Yanis Bahroun Topic: Similarity (mis)matching solves supervised learning problems in the dual. How to make a “Hebbian”-NN out of almost anything.

Presenter: Siavash Golkar, Ph.D., Research Scientist Topic: Dendritic cortical microcircuits approximate the backpropagation algorithm

Topic: Integrative analysis of multi-modal single-cell data Abstract: Single-cell RNA-seq has proven to be a transformative tool for the discovery of cell types and …

Topic: Developing Generative Models for Genomics Join from PC, Mac, Linux, iOS or Android: https://simonsfoundation.zoom.us/j/98416432897?pwd=bElRd1N3Z3poSkphNUtONW42cUZ4QT09

Speaker: David Lipshutz, Associate Research Scientist Topic: Paper review: A biologically plausible network for multi-component canonical correlation analysis Join from PC, Mac, Linux, iOS or Android: https …

Speaker: Christopher Park, Research Scientist, Genomics Topic: “The impact of RNA-binding protein dysregulation on psychiatric disorder risk.” Join from PC, Mac, Linux, iOS or Android: https://simonsfoundation …

Speaker: Kathleen Esfahany Topic: Summary of the Drosophila Hemibrain Connectome and demo of Neuprint interface for accessing data Join from PC, Mac, Linux, iOS or Android: https://simonsfoundation …

Speaker: Vikram Mulligan, Research Scientist, Systems Biology Topic: Advancing the design of peptide therapeutics Join from PC, Mac, Linux, iOS or Android: https://simonsfoundation.zoom.us/j/97373426179 …

Speaker: Deena Shefter, Associate Research Analyst Topic: Journal club on the following paper: Network Adaptation Improves Temporal Representation of Naturalistic Stimuli in Drosophila Eye: I Dynamics

Speaker: Jingpeng Wu, PhD Title: Towards Petabyte Scale Neuron Reconstruction using Deep Learning and Cloud Computing The computation of neural networks is closely related to its connectivity and …

Topic: ‘Visual Circuits and their Variations in a Microscopic Wasp’

Speaker: Tiberiu Tesileanu Topic: Online Bayesian time series segmentation: towards neural implementations. Join from PC, Mac, Linux, iOS or Android: https://simonsfoundation.zoom.us/j/98487246580?pwd=ZDFmSFQrSWlndm1sWW1jRWtxZWE4Zz09

Topic: A tale of two systems: Exploring the regulatory landscape of the IBD gut immune system Join from PC, Mac, Linux, iOS or Android: https://simonsfoundation.zoom.us …

Speaker: Yanis Bahroun Topic: NeurIPS submission: A neurally plausible minor subspace analyzer balances feedforward excitation and inhibition. Most neural circuits in the brain include inhibitory neurons in various …

Zoom Info: Join from PC, Mac, Linux, iOS or Android: https://simonsfoundation.zoom.us/j/732630308 Or Telephone: Dial(for higher quality, dial a number based on your …

Speaker: Andreas Tjarnberg

Presenter: David Lipshutz, Associate Research Scientist Topic: NeurIPS submission: “Nonnegative Independent Component Analysis” Zoom Info: Join from PC, Mac, Linux, iOS or Android: https://simonsfoundation.zoom.us/j …

Speaker: Claudia Skok Gibbs

Presenters: Charlie Windolf & David Lipshutz Topic: Slow feature analysis Zoom Link Join from PC, Mac, Linux, iOS or Android: https://simonsfoundation.zoom.us/j/732630308

Speaker: Jeffrey C. McGee, PhD Title: Adaptive hippocampal representations generated by a directed synaptic plasticity The seminar will be followed by an informal discussion for anyone interested. Zoom …

Speaker: Douglas Renfrew

Speaker: Siavash Golkar Topic: NeurIPS submission on biologically plausible Reduced Rank Regression Zoom Info: Join from PC, Mac, Linux, iOS or Android: https://simonsfoundation.zoom.us/j/732630308 …

Topic: Enabling reproducibility through large-scale continuous scientific benchmarks for applications in Rosetta Computational methods should be inherently reproducible. However, changes in the code, input options, and different …

Speaker: Anders Rasmussen

Topic: NeurIPS submissions Zoom Info: Join from PC, Mac, Linux, iOS or Android: https://simonsfoundation.zoom.us/j/732630308 Or Telephone: Dial(for higher quality, dial a number …

Speaker: Sherry Chow

Zoom Info: Join from PC, Mac, Linux, iOS or Android: https://simonsfoundation.zoom.us/j/732630308 Or Telephone: Dial(for higher quality, dial a number based on your …

This presentation was pre-recorded. An additional Dropbox link to view the recording will be sent on Monday morning 4/20/20. Please view the talk at your …

Speaker: Vikram Mulligan

Zoom Info: Join from PC, Mac, Linux, iOS or Android: https://simonsfoundation.zoom.us/j/732630308 Or Telephone: Dial(for higher quality, dial a number based on your …

Speaker: Vlad Gliogorijevic

Speaker: Shiva GhaaniFarashahi Topic: The role of lateral inhibition in Mushroom Body Link to paper: Localized inhibition in the Drosophila mushroom body Zoom Info: Join from PC, Mac …

Speaker: Julien Funk, Software Engineer, Genomics Topic: HumanBase – data-driven predictions of gene function, regulation and interactions Zoom Info: Join from PC, Mac, Linux, iOS or Android: https …

Presenter: Vladimir Gligorijevic, Ph.D., Research Scientist, Systems Biology Group, Center for Computational Biology Topic: Machine learning-guided protein design Computational protein design seeks to create a novel …