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  • Founded by Jim and Marilyn Simons, we’re a private philanthropy advancing mathematics and basic science.

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Bringing people and ideas together to fund, conduct, and share transformative science.

Our grants advance knowledge and strengthen connections between science and society.

Discover the latest news, research, and updates.

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We convene scientists, mathematicians, and thinkers to share ideas and explore new questions.

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Founded by Jim and Marilyn Simons, we’re a private philanthropy advancing mathematics and basic science.

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The Flatiron Institute is a research center that uses computational science to advance fields like physics, biology, and astronomy.

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Featured

Dissecting mechanisms of hyperarousal in autism and related disorders using the Simons Sleep Project

Funded Work

Gravity Follows Newton’s and Einstein’s Rules, Even at Cosmic Scales

April 15, 2026

Scientists Capture Superconductivity’s ‘Dancing Pairs’ for First Time, Filling Gap in Decades-Old Theory

April 15, 2026

How SURFiN Fellowships Jump-Started These 3 Neuroscience Students’ STEM Careers

March 18, 2026

Results

  1. Single cell analysis of dup15q syndrome reveals developmental and postnatal molecular changes in autism.

    Publication
  2. Benchmarking of local genetic correlation estimation methods using summary statistics from genome-wide association studies

    Publication
  3. Variational Inference with Gaussian Score Matching

    Publication
    Variational inference (VI) is a method to approximate the computationally intractable posterior distributions that arise in Bayesian statistics. Typically, VI fits a simple parametric distribution to be close …
  4. Increased rates of chronic physical health conditions across all organ systems in autistic adolescents and adults.

    Publication
  5. Phenotype and genetic analysis of data collected within the first year of NeuroDev.

    Publication
  6. Mitochondrial electron transport chain, ceramide and Coenzyme Q are linked in a pathway that drives insulin resistance in skeletal muscle

    Publication
    Insulin resistance (IR) is a complex metabolic disorder that underlies several human diseases, including type 2 diabetes and cardiovascular disease. Despite extensive research, the precise mechanisms underlying IR …
  7. Scaling behaviour and control of nuclear wrinkling

    Publication
    The cell nucleus is enveloped by a complex membrane, whose wrinkling has been implicated in disease and cellular aging. The biophysical dynamics and spectral evolution of nuclear wrinkling …
  8. Community providers' reported use of treatment practices in the United States.

    Publication
  9. Accelerated longitudinal weight gain among infants with in utero COVID-19 exposure.

    Publication
  10. Classification of missense variants in the N-methyl-d-aspartate receptor GRIN gene family as gain- or loss-of-function.

    Publication
  11. FMM-accelerated solvers for the Laplace-Beltrami problem on complex surfaces in three dimensions

    Publication
    The Laplace–Beltrami problem on closed surfaces embedded in three dimensions arises in many areas of physics, including molecular dynamics (surface diffusion), electromagnetics (harmonic vector fields), and fluid …
  12. Hierarchical bubble size distributions in coarsening wet liquid foams

    Publication
    Coarsening of two-phase systems is crucial for the stability of dense particle packingssuch as alloys, foams, emulsions, or supersaturated solutions. Mean field theoriespredict an asymptotic scaling state …
  13. Single-cell brain organoid screening identifies developmental defects in autism.

    Publication
  14. SnapShot: Reporting practices for publishing results with human PSCs and tissue stem cells.

    Publication
  15. Clustering of cortical dynein regulates the mechanics of spindle orientation in human mitotic cells

    Publication
    The forces which orient the spindle in human cells remain poorly understood due to a lack of direct mechanical measurements in mammalian systems. We use magnetic tweezers to …
  16. The relationship between augmentative and alternative communication use by pediatric psychiatric inpatients with autism spectrum disorder and interfering behaviors.

    Publication
  17. A Gentle Introduction to Gradient-Based Optimization and Variational Inequalities for Machine Learning

    Publication
    The rapid progress in machine learning in recent years has been based on a highly productive connection to gradient-based optimization. Further progress hinges in part on a …
  18. Liquid Filled Elastomers: From Linearization to Elastic Enhancement

    Publication
    Surface tension at cavity walls can play havoc with the mechanical properties of perforated soft solids when the cavities are filled with a fluid. This study is an …
  19. Subcortical brain alterations in carriers of genomic copy number variants.

    Publication
  20. Understanding polaritonic chemistry from ab initio quantum electrodynamics

    Publication
  21. High-harmonic spectroscopy of low-energy electron-scattering dynamics in liquids

    Publication
  22. High-harmonic generation in liquids with few-cycle pulses: effect of laser-pulse duration on the cut-off energy

    Publication
  23. Interfacing Branching Random Walks with Metropolis Sampling: Constraint Release in Auxiliary-Field Quantum Monte Carlo

    Publication
  24. Cavity-renormalized quantum criticality in a honeycomb bilayer antiferromagnet

    Publication
  25. Ideal Chern bands are Landau levels in curved space

    Publication
  26. Combining Electron-Phonon and Dynamical Mean-Field Theory Calculations of Correlated Materials: Transport in the Correlated Metal Sr

    Publication
  27. Reinforcement learning with function approximation: From linear to nonlinear

    Publication
    Function approximation has been an indispensable component in modern reinforcement learning algorithms designed to tackle problems with large state spaces in high dimensions. This paper reviews recent results …
  28. Learning Vector Quantized Shape Code for Amodal Blastomere Instance Segmentation

    Publication
    Blastomere instance segmentation is important for analyzing embryos’ abnormality. To measure the accurate shapes and sizes of blastomeres, their amodal segmentation is necessary. Amodal instance segmentation aims to …
  29. Multi-Task Curriculum Learning for Partially Labeled Data

    Publication
    Incomplete labels are common in multi-task learning for biomedical applications due to several practical difficulties, e.g., expensive annotation efforts by experts, limit of data collection, different …
  30. Three generation families: Analysis of de novo variants in autism.

    Publication
  31. Discovery of eQTL alleles associated with autism spectrum disorder: A case-control study.

    Publication
  32. The autism impact measure (AIM): Meaningful change thresholds and core symptom changes over one year from an online survey in the U.S.

    Publication
  33. An equivariant neural operator for developing nonlocal tensorial constitutive models

    Publication
    Developing robust constitutive models is a fundamental and longstanding problem for accelerating the simulation of complicated physics. Machine learning provides promising tools to construct constitutive models based on …
  34. Neural network adaptive coding efficiency and stochastic representational geometry

    Publication
    This dissertation investigates two fundamental aspects of neural population coding: adaptive coding efficiency and stochastic representational geometry. We introduce a theory for adaptive statistical whitening revolving around a …
  35. Examining the latent structure and correlates of sensory reactivity in autism: a multi-site integrative data analysis by the autism sensory research consortium.

    Publication
  36. A unified model for the co-evolution of galaxies and their circumgalactic medium: the relative roles of turbulence and atomic cooling physics

    Publication
    The circumgalactic medium (CGM) plays a pivotal role in regulating gas flows around galaxies and thus shapes their evolution. However, the details of how galaxies and their CGM …
  37. Structure-function analysis suggests that the photoreceptor LITE-1 is a light-activated ion channel

    Publication
    Sensation of light is essential for all organisms. The eye-less nematode Caenorhabditis elegans detects UV and blue light to evoke escape behavior. The photosensor LITE-1 absorbs …
  38. Behavioral parent training engagement among young children with autism spectrum disorder.

    Publication
  39. A Hierarchical Bayesian Framework for Inferring the Stellar Obliquity Distribution

    Publication
    Stellar obliquity, the angle between a planet's orbital axis and its host star's spin axis, traces the formation and evolution of a planetary system. In transiting …
  40. Discontinuous instabilities in disordered solids

    Publication
    Under a sufficiently large load, a solid material will flow via rearrangements, where particles change neighbors. Such plasticity is most easily described in the athermal, quasistatic limit of …
  41. Protocol for the development of joint attention-based subclassification of autism spectrum disorder and validation using multi-modal data.

    Publication
  42. Automatic, high-order, and adaptive algorithms for Brillouin zone integration

    Publication
    We present efficient methods for Brillouin zone integration with a non-zero but possibly very small broadening factor η, focusing on cases in which downfolded Hamiltonians can be …
  43. Generation and motion of interfaces in a mass-conserving reaction-diffusion system

    Publication
    Reaction-diffusion models with nonlocal constraints naturally arise as limiting cases of coupled bulk-surface models of intracellular signalling. In this paper, a minimal, mass-conserving model of …
  44. Evolutionary history of MEK1 illuminates the nature of deleterious mutations

    Publication
    Mutations in signal transduction pathways lead to various diseases including cancers. MEK1 kinase, encoded by the human MAP2K1 gene, is one of the central components of the MAPK …
  45. Modeling idiopathic autism in forebrain organoids reveals an imbalance of excitatory cortical neuron subtypes during early neurogenesis.

    Publication
  46. Genetic control of mRNA splicing as a potential mechanism for incomplete penetrance of rare coding variants.

    Publication
  47. Genetic control of mRNA splicing as a potential mechanism for incomplete penetrance of rare coding variants.

    Publication
  48. DeePMD-kit v2: A software package for deep potential models

    Publication
    DeePMD-kit is a powerful open-source software package that facilitates molecular dynamics simulations using machine learning potentials known as Deep Potential (DP) models. This package, which was …
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