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  • Founded by Jim and Marilyn Simons, we’re a private philanthropy advancing mathematics and basic science.

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Bringing people and ideas together to fund, conduct, and share transformative science.

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Featured

Dissecting mechanisms of hyperarousal in autism and related disorders using the Simons Sleep Project

Funded Work

Gravity Follows Newton’s and Einstein’s Rules, Even at Cosmic Scales

April 15, 2026

Scientists Capture Superconductivity’s ‘Dancing Pairs’ for First Time, Filling Gap in Decades-Old Theory

April 15, 2026

How SURFiN Fellowships Jump-Started These 3 Neuroscience Students’ STEM Careers

March 18, 2026

Results

  1. Minian, an open-source miniscope analysis pipeline

    Publication
    Miniature microscopes have gained considerable traction for in vivo calcium imaging in freely behaving animals. However, extracting calcium signals from raw videos is a computationally complex problem and …
  2. Spatiotemporal dynamics of noradrenaline during learned behaviour.

    Publication
  3. Physical and functional convergence of the autism risk genes Scn2a and Ank2 in neocortical pyramidal cell dendrites.

    Publication
  4. A preoptic neuronal population controls fever and appetite during sickness.

    Publication
  5. Max Planck Test Publication

    Publication
  6. DNA methylation signature associated with Bohring-Opitz syndrome: A new tool for functional classification of variants in ASXL genes.

    Publication
  7. A further study of relations between motor impairment and social communication, cognitive, language, functional impairments, and repetitive behavior severity in children with ASD using the SPARK study dataset.

    Publication
  8. Quantifying the role of the lattice in metal--insulator phase transitions

    Publication
  9. Cholinergic interneurons mediate cocaine extinction in male mice through plasticity across medium spiny neuron subtypes

    Publication
    Cholinergic interneurons (ChINs) in the nucleus accumbens (NAc) have been implicated in the extinction of drug associations, as well as related plasticity in medium spiny neurons (MSNs). However …
  10. Sensory Evidence Accumulation Using Optic Flow in a Naturalistic Navigation Task

    Publication
    … sensorimotor interactions and probed the extent to which participants integrate sensory evidence by adding task manipulations that reveal complementary aspects of the computation.
  11. Functional correlates of clinical phenotype and severity in recurrent SCN2A variants.

    Publication
  12. The geometry of robustness in spiking neural networks

    Publication
    Neural systems are remarkably robust against various perturbations, a phenomenon that still requires a clear explanation. Here, we graphically illustrate howneural networks can become robust. We study spiking …
  13. Leveraging a translational research approach to drive diagnostic and treatment advances for autism.

    Publication
  14. Diagnostic preferences include discussion of etiology for adults with cerebral palsy and their caregivers.

    Publication
  15. Parental language input predicts neuroscillatory patterns associated with language development in toddlers at risk of autism.

    Publication
  16. Neurodevelopmental phenotypes associated with pathogenic variants in SLC6A1.

    Publication
  17. On the Hunt for the Origins of the Orphan--Chenab Stream: Detailed Element Abundances with APOGEE and Gaia

    Publication
    Stellar streams in the Galactic halo are useful probes of the assembly of galaxies like the Milky Way. Many tidal stellar streams that have been found in recent …
  18. Motor cortex activity across movement speeds is predicted by network-level strategies for generating muscle activity

    Publication
    Learned movements can be skillfully performed at different paces. What neural strategies produce this flexibility? Can they be predicted and understood by network modeling? We trained monkeys to …
  19. Autistic adults have poorer quality healthcare and worse health based on self-report data.

    Publication
  20. Towards the cellular-scale simulation of motor-driven cytoskeletal assemblies

    Publication
    The cytoskeleton -- a collection of polymeric filaments, molecular motors, and crosslinkers -- is a foundational example of active matter, and in the cell assembles into organelles that guide basic …
  21. Bright z~9 Galaxies in Parallel: The Bright End of the Rest-UV Luminosity Function from HST Parallel Programs

    Publication
    The abundance of bright galaxies at z>8 can provide key constraints on models of galaxy formation and evolution, as the predicted abundance varies greatly when different physical …
  22. A Measurement of Stellar Surface Gravity Hidden in Radial Velocity Differences of Co-moving Stars

    Publication
    The gravitational redshift induced by stellar surface gravity is notoriously difficult to measure for non-degenerate stars, since its amplitude is small in comparison with the typical Doppler …
  23. Combined omic analyses reveal novel loss-of-function NLGN3 variants in GnRH deficiency and autism.

    Publication
  24. Variation in glutamate and GABA genes and their association with brain structure and chemistry in autism.

    Publication
  25. Mapping Dark Matter with Extragalactic Stellar Streams: the Case of Centaurus A

    Publication
    In the coming decade, thousands of stellar streams will be observed in the halos of external galaxies. What fundamental discoveries will we make about dark matter from these …
  26. Limitations of a proposed correction for slow drifts in decision criterion

    Publication
    Trial history biases in decision-making tasks are thought to reflect systematic updates of decision variables, therefore their precise nature informs conclusions about underlying heuristic strategies and learning …
  27. Charting Galactic Accelerations with Stellar Streams and Machine Learning

    Publication
    We present a data-driven method for reconstructing the galactic acceleration field from phase-space measurements of stellar streams. Our approach is based on a flexible and differentiable …
  28. Neural Circuits for Dynamics-Based Segmentation of Time Serie

    Publication
    The brain must extract behaviorally relevant latent variables from the signals streamed by the sensory organs. Such latent variables are often encoded in the dynamics that generated the …
  29. Learning, fast and slow

    Publication
    Animals can learn efficiently from a single experience and change their future behavior in response. However, in other instances, animals learn very slowly, requiring thousands of experiences. Here …
  30. Deep denoising for scientific discovery: A case study in electron microscopy

    Publication
    Denoising is a fundamental challenge in scientific imaging. Deep convolutional neural networks (CNNs) provide the current state of the art in denoising photographic images. However, their potential has …
  31. Sex-specific topological differences in germline cell lineage trees

    Publication
    A conserved phase of gametogenesis is the development of oocytes and sperm within cell clusters (germline cysts) that arise through serial divisions of a founder cell. The resulting …
  32. Neural-Network Quantum States for Periodic Systems in Continuous Space

    Publication
    We introduce a family of neural quantum states for the simulation of strongly interacting systems in the presence of spatial periodicity. Our variational state is parametrized in terms …
  33. Evidence of partner similarity for autistic traits, systemizing, and theory of mind via facial expressions.

    Publication
  34. Emergent reliability in sensory cortical coding and inter-area communication

    Publication
    Reliable sensory discrimination must arise from high-fidelity neural representations and communication between brain areas. However, how neocortical sensory processing overcomes the substantial variability of neuronal sensory responses …
  35. Resting state EEG power spectrum and functional connectivity in autism: A cross-sectional analysis.

    Publication
  36. Exploring the Adjugate Matrix Approach to Quaternion Pose Extraction

    Publication
    Quaternions are important for a wide variety of rotation-related problems in computer graphics, machine vision, and robotics. We study the nontrivial geometry of the relationship between quaternions …
  37. Exploring the Adjugate Matrix Approach to Quaternion Pose Extraction

    Publication
    Quaternions are important for a wide variety of rotation-related problems in computer graphics, machine vision, and robotics. We study the nontrivial geometry of the relationship between quaternions …
  38. Selective representations of texture and motion in mouse higher visual areas

    Publication
    The mouse visual cortex contains interconnected higher visual areas, but their functional specializations are unclear. Here, we used a data-driven approach to examine the representations of complex …
  39. Choice-selective sequences dominate in cortical relative to thalamic inputs to NAc to support reinforcement learning

    Publication
    How are actions linked with subsequent outcomes to guide choices? The nucleus accumbens, which is implicated in this process, receives glutamatergic inputs from the prelimbic cortex and midline …
  40. Pathfinder: Parallel quasi-Newton variational inference

    Publication
    We propose Pathfinder, a variational method for approximately sampling from differentiable log densities. Starting from a random initialization, Pathfinder locates normal approximations to the target density along a …
  41. Physiological Mechanisms and Significance of Intracranial B Waves

    Publication
    … unique morphological wave features. These findings strongly suggest a common physiological mechanism underlying the two classes of phenomena. The slow blood flow and volume oscillations causing intracranial …
  42. Quantification of gas concentrations in NO/NO2/C3H8/NH3 mixtures using machine learning

    Publication
    We employ machine learning to decode the composition of unknown gas mixtures from the output of an array of four electrochemical sensors. The sensors use metal oxide electrodes …
  43. A fast Chebyshev method for the Bingham closure with application to active nematic suspensions

    Publication
    Continuum kinetic theories provide an important tool for the analysis and simulation of particle suspensions. When those particles are anisotropic, the addition of a particle orientation vector to …
  44. The proto-oncogene DEK regulates neuronal excitability and tau accumulation in Alzheimer’s disease vulnerable neurons

    Publication
    Neurons from layer II of the entorhinal cortex (ECII) are the first to accumulate tau protein aggregates and degenerate during prodromal Alzheimer’s disease. Here, we use a …
  45. The Tabula Sapiens: A multiple-organ, single-cell transcriptomic atlas of humans

    Publication
    Molecular characterization of cell types using single-cell transcriptome sequencing is revolutionizing cell biology and enabling new insights into the physiology of human organs. We created a human …
  46. Neutron-capture elements record the ordered chemical evolution of the disc over time

    Publication
    An ensemble of chemical abundances probing different nucleosynthetic channels can be leveraged to build a comprehensive understanding of the chemical and structural evolution of the Galaxy. Using GALAH …
  47. Global and subtype-specific modulation of cortical inhibitory neurons regulated by acetylcholine during motor learning

    Publication
    Inhibitory neurons (INs) consist of distinct subtypes with unique functions. Previous studies on INs mainly focused on single brain regions, and thus it remains unclear whether the modulation …
  48. Structural Collaboration Test Publication

    Publication
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