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  • Founded by Jim and Marilyn Simons, we’re a private philanthropy advancing mathematics and basic science.

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Bringing people and ideas together to fund, conduct, and share transformative science.

Our grants advance knowledge and strengthen connections between science and society.

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Founded by Jim and Marilyn Simons, we’re a private philanthropy advancing mathematics and basic science.

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The Flatiron Institute is a research center that uses computational science to advance fields like physics, biology, and astronomy.

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Featured

Dissecting mechanisms of hyperarousal in autism and related disorders using the Simons Sleep Project

Funded Work

Gravity Follows Newton’s and Einstein’s Rules, Even at Cosmic Scales

April 15, 2026

Scientists Capture Superconductivity’s ‘Dancing Pairs’ for First Time, Filling Gap in Decades-Old Theory

April 15, 2026

How SURFiN Fellowships Jump-Started These 3 Neuroscience Students’ STEM Careers

March 18, 2026

Results

  1. Autism spectrum disorder and schizophrenia: An updated conceptual review.

    Publication
  2. Infant vocalizing and phenotypic outcomes in autism: Evidence from the first 2 years.

    Publication
  3. Big data approach to characterize restricted and repetitive behaviors in autism.

    Publication
  4. Polygenic risk for mental disorder reveals distinct association profiles across social behaviour in the general population.

    Publication
  5. Multi-omic analysis along the gut-brain axis points to a functional architecture of autism

    Publication
    Autism is a highly heritable neurodevelopmental disorder characterized by heterogeneous cognitive, behavioral and communication impairments. Disruption of the gut-brain axis (GBA) has been implicated in autism, with …
  6. Intra-topic latency as an automated behavioral marker of treatment response in autism spectrum disorder.

    Publication
  7. Multi-omic analysis along the gut-brain axis points to a functional architecture of autism

    Publication
    Autism is a highly heritable neurodevelopmental disorder characterized by heterogeneous cognitive, behavioral and communication impairments. Disruption of the gut-brain axis (GBA) has been implicated in autism, with …
  8. Comorbidities in autism spectrum disorder and their etiologies.

    Publication
  9. Cutting Some Slack for SGD with Adaptive Polyak Stepsizes

    Publication
    Tuning the step size of stochastic gradient descent is tedious and error prone. This has motivated the development of methods that automatically adapt the step size using readily …
  10. Measuring Chemical Likeness of Stars with Relevant Scaled Component Analysis

    Publication
    Identification of chemically similar stars using elemental abundances is core to many pursuits within Galactic archeology. However, measuring the chemical likeness of stars using abundances directly is limited …
  11. Mechanisms of distributed working memory in a large-scale network of macaque neocortex

    Publication
    Neural activity underlying working memory is not a local phenomenon but distributed across multiple brain regions. To elucidate the circuit mechanism of such distributed activity, we developed an …
  12. Blood-brain barrier permeable β-blockers linked to lower risk of Alzheimer's disease in hypertension

    Publication
    … hypertension, treatment with highly blood-brain barrier permeable β-blockers reduces the risk of Alzheimer's disease compared to low permeability drugs. Our findings support the hypothesis …
  13. The Importance of Accounting for Movement When Relating Neuronal Activity to Sensory and Cognitive Processes

    Publication
    A surprising finding of recent studies in mouse is the dominance of widespread movement-related activity throughout the brain, including in early sensory areas. In awake subjects, failing …
  14. Increased fMRI connectivity upon chemogenetic inhibition of the mouse prefrontal cortex.

    Publication
  15. The Hough Stream Spotter: A New Method for Detecting Linear Structure in Resolved Stars and Application to the Stellar Halo of M31

    Publication
    Stellar streams from globular clusters (GCs) offer constraints on the nature of dark matter and have been used to explore the dark matter halo structure and substructure of …
  16. Characterizing emotion recognition and theory of mind performance profiles in unaffected siblings of autistic children.

    Publication
  17. A dentate gyrus-CA3 inhibitory circuit promotes evolution of hippocampal-cortical ensembles during memory consolidation

    Publication
    Memories encoded in the dentate gyrus (DG) ‒ CA3 circuit of the hippocampus are routed from CA1 to anterior cingulate cortex (ACC) for consolidation. Although CA1 parvalbumin inhibitory neurons …
  18. Euchromatin activity enhances segregation and compaction of heterochromatin in the cell nucleus

    Publication
    The large-scale organization of the genome inside the cell nucleus is critical for the cell’s function. Chromatin – the functional form of DNA in cells – serves as …
  19. FMRP sustains presynaptic function via control of activity-dependent bulk endocytosis.

    Publication
  20. The Homogeneity of the Star-forming Environment of the Milky Way Disk over Time

    Publication
    Stellar abundances and ages afford the means to link chemical enrichment to galactic formation. In the Milky Way, individual element abundances show tight correlations with age, which vary …
  21. Can we make drug discovery targeting fundamental mechanisms of aging a reality?

    Publication
  22. Spatial Transformer K-Means

    Publication
    K-means defines one of the most employed centroid-based clustering algorithms with performances tied to the data's embedding. Intricate data embeddings have been designed to push …
  23. Interacting Stellar EMRIs as Sources of Quasi-periodic Eruptions in Galactic Nuclei

    Publication
    A star that approaches a supermassive black hole (SMBH) on a circular extreme mass ratio inspiral (EMRI) can undergo Roche lobe overflow (RLOF), resulting in a phase of …
  24. Balanced chromosomal rearrangements offer insights into coding and noncoding genomic features associated with developmental disorders.

    Publication
  25. Brain-wide visual habituation networks in wild type and fmr1 zebrafish.

    Publication
  26. Inverse Dirichlet weighting enables reliable training of physics informed neural networks

    Publication
    We characterize and remedy a failure mode that may arise from multi-scale dynamics with scale imbalances during training of deep neural networks, such as physics informed neural …
  27. Polygenic scores for empathy associate with posttraumatic stress severity in response to certain traumatic events.

    Publication
  28. Novel elasticity measurements reveal C. elegans cuticle stiffens with age and in a long-lived mutant

    Publication
    Changes in biomechanical properties have profound impacts on human health. C. elegans might serve as a model for studying the molecular genetics of mammalian tissue decline. Previously, we …
  29. Heating of Magnetically Dominated Plasma by Alfvén-Wave Turbulence

    Publication
    Magnetic energy around astrophysical compact objects can strongly dominate over plasma rest mass. Emission observed from these systems may be fed by dissipation of Alfvén wave turbulence, which …
  30. Heating of Magnetically Dominated Plasma by Alfvén-Wave Turbulence

    Publication
    Magnetic energy around astrophysical compact objects can strongly dominate over plasma rest mass. Emission observed from these systems may be fed by dissipation of Alfvén wave turbulence, which …
  31. A human brain vascular atlas reveals diverse mediators of Alzheimer's risk

    Publication
    The human brain vasculature is of great medical importance: its dysfunction causes disability and death1, and the specialized structure it forms-the blood-brain barrier-impedes the treatment …
  32. CMB-S4: Forecasting Constraints on Primordial Gravitational Waves

    Publication
    CMB-S4---the next-generation ground-based cosmic microwave background (CMB) experiment---is set to significantly advance the sensitivity of CMB measurements and enhance our understanding of the …
  33. Helical region near poly-Q tract in prion-like domain of Arabidopsis ELF3 plays role in temperature-sensing mechanism

    Publication
    Many plants, such as Arabidopsis thaliana, have adapted to sense increasing temperature and respond by up-regulating genes responsible for growth. Recent studies have identified a three-protein …
  34. Measuring errors over time: towards a quantitative theory of chromosome segregation error correction

    Publication
    The mammalian mitotic spindle segregates an equal number of chromosomes to daughter cells. Over the course of spindle assembly, many initially erroneous attachments between kinetochores and microtubules are …
  35. Somatic mutations reveal hypermutable brains and are associated with neuropsychiatric disorders.

    Publication
  36. Enhancing the discriminatory power of ADHD and autism spectrum disorder polygenic scores in clinical and non-clinical samples.

    Publication
  37. Hyperuniformity and phase enrichment in vortex and rotor assemblies

    Publication
    Ensembles of particles rotating in a two-dimensional fluid can exhibit chaotic dynamics yet develop signatures of hidden order. Such "rotors" are found in the natural world spanning …
  38. Sparse balance: Excitatory-inhibitory networks with small bias currents and broadly distributed synaptic weights

    Publication
    Cortical circuits generate excitatory currents that must be cancelled by strong inhibition to assure stability. The resulting excitatory-inhibitory (E-I) balance can generate spontaneous irregular activity but …
  39. Hierarchical timescales in the neocortex: Mathematical mechanism and biological insights

    Publication
    A cardinal feature of the neocortex is the progressive increase of the spatial receptive fields along the cortical hierarchy. Recently, theoretical and experimental findings have shown that the …
  40. Cell types of origin of the cell-free transcriptome

    Publication
    Cell-free RNA from liquid biopsies can be analyzed to determine disease tissue of origin. We extend this concept to identify cell types of origin using the Tabula …
  41. Human NREM Sleep Promotes Brain-Wide Vasomotor and Respiratory Pulsations

    Publication
    … vasomotor, respiration, and cardiac rhythms in human brain increase during sleep, extending previous observations of their association with glymphatic brain clearance during sleep in rodents. The magnitudes …
  42. Mice alternate between discrete strategies during perceptual decision-making

    Publication
    Classical models of perceptual decision-making assume that subjects use a single, consistent strategy to form decisions, or that decision-making strategies evolve slowly over time. Here we …
  43. Optimizing intact skull intrinsic signal imaging for subsequent targeted electrophysiology across mouse visual cortex.

    Publication
  44. LiCl treatment leads to long-term restoration of spine maturation and synaptogenesis in adult Tbr1 mutants.

    Publication
  45. A simple model for mixing and cooling in cloud-wind interactions

    Publication
    We introduce a simple entropy-based formalism to characterize the role of mixing in pressure-balanced multiphase clouds, and demonstrate example applications using Enzo-E (magneto)hydrodynamic simulations …
  46. Deep phenotyping of Alzheimer’s disease leveraging electronic medical records identifies sex-specific clinical associations

    Publication
    Alzheimer’s Disease (AD) is a neurodegenerative disorder that is still not fully understood. Sex modifies AD vulnerability, but the reasons for this are largely unknown. We utilize …
  47. High-performance microbial opsins for spatially and temporally precise perturbations of large neuronal networks

    Publication
    The biophysical properties of existing optogenetic tools constrain the scale, speed, and fidelity of precise optogenetic control. Here, we use structure-guided mutagenesis to engineer opsins that exhibit …
  48. Pax6 limits the competence of developing cerebral cortical cells.

    Publication
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