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  • Founded by Jim and Marilyn Simons, we’re a private philanthropy advancing mathematics and basic science.

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Bringing people and ideas together to fund, conduct, and share transformative science.

Our grants advance knowledge and strengthen connections between science and society.

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Founded by Jim and Marilyn Simons, we’re a private philanthropy advancing mathematics and basic science.

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The Flatiron Institute is a research center that uses computational science to advance fields like physics, biology, and astronomy.

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Featured

Dissecting mechanisms of hyperarousal in autism and related disorders using the Simons Sleep Project

Funded Work

Gravity Follows Newton’s and Einstein’s Rules, Even at Cosmic Scales

April 15, 2026

Scientists Capture Superconductivity’s ‘Dancing Pairs’ for First Time, Filling Gap in Decades-Old Theory

April 15, 2026

How SURFiN Fellowships Jump-Started These 3 Neuroscience Students’ STEM Careers

March 18, 2026

Results

  1. Context-dependent representations of movement in Drosophila dopaminergic reinforcement pathways

    Publication
    Dopamine plays a central role in motivating and modifying behavior, serving to invigorate current behavioral performance and guide future actions through learning. Here we examine how this single …
  2. The organization and developmental establishment of cortical interneuron presynaptic circuits.

    Publication
  3. Genome-wide analysis of common and rare variants via multiple knockoffs at biobank scale, with an application to Alzheimer disease genetics

    Publication
    Knockoff-based methods have become increasingly popular due to their enhanced power for locus discovery and their ability to prioritize putative causal variants in a genome-wide analysis …
  4. "Super-Kilonovae" from Massive Collapsars as Signatures of Black-Hole Birth in the Pair-instability Mass Gap

    Publication
    The core collapse of rapidly rotating massive ~10 Msun stars ("collapsars"), and resulting formation of hyper-accreting black holes, are a leading model for the central engines of …
  5. Sex significantly impacts the function of major depression-linked variants in vivo.

    Publication
  6. Radiative Turbulent Flares in Magnetically Dominated Plasmas

    Publication
    We perform 2D and 3D kinetic simulations of reconnection-mediated turbulent flares in a magnetized electron-positron plasma, with weak and strong radiative cooling. Such flares can be …
  7. Novel small molecule inhibition of IKK/NF-κB activation reduces markers of senescence and improves healthspan in mouse models of aging

    Publication
    Constitutive NF-κB activation is associated with cellular senescence and stem cell dysfunction and rare variants in NF-κB family members are enriched in centenarians. We recently identified …
  8. Striatal indirect pathway mediates exploration via collicular competition

    Publication
    The ability to suppress actions that lead to a negative outcome and explore alternative actions is necessary for optimal decision making. Although the basal ganglia have been implicated …
  9. S100B dysregulation during brain development affects synaptic SHANK protein networks via alteration of zinc homeostasis.

    Publication
  10. Encoding Priors with Group Sparsity for Model Learning From Limited and Noisy Biological Data

    Publication
    Numerical methods for approximately solving partial differential equations (PDE) are at the core of scientific computing. Often, this requires high-resolution or adaptive discretization grids to capture relevant …
  11. An approach to gene-based testing accounting for dependence of tests among nearby genes.

    Publication
  12. The Astrophysical Variance in Gaia-Radial Velocity Spectrometer Spectra

    Publication
    Large surveys are providing a diversity of spectroscopic observations with Gaia alone set to deliver millions of Ca-triplet-region spectra across the Galaxy. We aim to understand …
  13. Discriminating Data: Correlation, Neighborhoods, and the New Politics of Recognition

    Publication
    mathematical illustrations by Alex H. Barnett: In Discriminating Data, Wendy Hui Kyong Chun reveals how polarization is a goal—not an error—within big data and machine learning …
  14. c-lasso - a Python package for constrained sparse and robust regression and classification

    Publication
    We introduce c-lasso, a Python package that enables sparse and robust linear regression and classification with linear equality constraints. The underlying statistical forward model is assumed to …
  15. A recurrent SHANK3 frameshift variant in autism spectrum disorder.

    Publication
  16. Neuronal and glial cell number is altered in a cortical layer-specific manner in autism.

    Publication
  17. Comparing the effective enhancement of local and nonlocal spin-orbit couplings on honeycomb lattices due to strong electronic correlations

    Publication
  18. Dynamical obstruction to localization in a disordered spin chain

    Publication
  19. Universality in the onset of quantum chaos in many-body systems

    Publication
  20. Topological Materials Discovery from Crystal Symmetry

    Publication
  21. Band manipulation and spin texture in interacting moiré helical edges

    Publication
  22. Reverse engineering recurrent neural networks with Jacobian switching linear dynamical systems

    Publication
    Recurrent neural networks (RNNs) are powerful models for processing time-series data, but it remains challenging to understand how they function. Improving this understanding is of substantial interest …
  23. 50 years of mnemonic persistent activity: quo vadis?

    Publication
    Half a century ago persistent spiking activity in the neocortex was discovered to be a neural substrate of working memory. Since then scientists have sought to understand this …
  24. Bottom-up inputs are required for establishment of top-down connectivity onto cortical layer 1 neurogliaform cells.

    Publication
  25. A longitudinal study of parent gestures, infant responsiveness, and vocabulary development in infants at risk for autism spectrum disorder.

    Publication
  26. Precision autism: Genomic stratification of disorders making up the broad spectrum may demystify its "epidemic rates".

    Publication
  27. BISOU: a balloon project to measure the CMB spectral distortions

    Publication
    The BISOU (Balloon Interferometer for Spectral Observations of the Universe) project aims to study the viability and prospects of a balloon-borne spectrometer, pathfinder of a future space …
  28. A simple equivariant machine learning method for dynamics based on scalars

    Publication
    Physical systems obey strict symmetry principles. We expect that machine learning methods that intrinsically respect these symmetries should have higher prediction accuracy and better generalization in prediction of …
  29. Macrophages on the margin: Choroid plexus immune responses.

    Publication
  30. Genetically identified amygdala-striatal circuits for valence-specific behaviors.

    Publication
  31. Analysis of the SPARK study COVID-19 parent survey: Early impact of the pandemic on access to services, child/parent mental health, and benefits of online services.

    Publication
  32. Patterns of delay in early gross motor and expressive language milestone attainment in probands with genetic conditions versus idiopathic ASD from SFARI registries.

    Publication
  33. Development of the pupillary light reflex from 9 to 24 months: Association with common autism spectrum disorder (ASD) genetic liability and 3-year ASD diagnosis.

    Publication
  34. Oestrogen engages brain MC4R signalling to drive physical activity in female mice.

    Publication
  35. Mutational bias in spermatogonia impacts the anatomy of regulatory sites in the human genome.

    Publication
  36. Boundary Layer Circumplanetary Accretion: How Fast Could an Unmagnetized Planet Spin Up through Its Disk?

    Publication
    Gas giant planets are expected to accrete most of their mass via a circumplanetary disk. If the planet is unmagnetized and initially slowly rotating, it will accrete gas …
  37. Integration of genetic, transcriptomic, and clinical data provides insight into 16p11.2 and 22q11.2 CNV genes.

    Publication
  38. Boundary Layer Circumplanetary Accretion: How Fast Could an Unmagnetized Planet Spin Up Through Its Disk?

    Publication
    Gas giant planets are expected to accrete most of their mass via a circumplanetary disk. If the planet is unmagnetized and initially slowly rotating, it will accrete gas …
  39. Supervised multisensory calibration signals are evident in VIP but not MSTd

    Publication
    Multisensory plasticity enables our senses to dynamically adapt to each other and the external environment, a fundamental operation that our brain performs continuously. We searched for neural correlates …
  40. Metastable attractors explain the variable timing of stable behavioral action sequences

    Publication
    The timing of self-initiated actions shows large variability even when they are executed in stable, well-learned sequences. Could this mix of reliability and stochasticity arise within …
  41. Individual bitter-sensing neurons in Drosophila exhibit both ON and OFF responses that influence synaptic plasticity

    Publication
    The brain generates internal representations that translate sensory stimuli into appropriate behavior. In the taste system, different tastes activate distinct populations of sensory neurons. We investigated the temporal …
  42. The interconnected causes and consequences of sleep in the brain

    Publication
    Sleep is essential for brain function in a surprisingly diverse set of ways. In the short term, lack of sleep leads to impaired memory and attention; in the …
  43. Value representation in the monkey hippocampus

    Publication
    The hippocampus is thought to form cognitive maps across different domains of experience, including space and time. Recent work by Knudsen and Wallis identifies a map of abstract …
  44. De novo variant calling identifies cancer mutation profiles in the 1000 Genomes Project.

    Publication
  45. Bayesian estimation of our local motion from the Planck-2018 CMB temperature map

    Publication
    The largest fluctuation in the CMB sky is the CMB dipole, which is believed to be caused by the motion of our observation frame with respect to the …
  46. CARPool covariance: fast, unbiased covariance estimation for large-scale structure observables

    Publication
    The covariance matrix Σ of non-linear clustering statistics that are measured in current and upcoming surveys is of fundamental interest for comparing cosmological theory and data and …
  47. Olfactory landmarks and path integration converge to form a cognitive spatial map

    Publication
    The convergence of internal path integration and external sensory landmarks generates a cognitive spatial map in the hippocampus. We studied how localized odor cues are recognized as landmarks …
  48. Subpopulations of neurons in lOFC encode previous and current rewards at time of choice

    Publication
    Studies of neural dynamics in lateral orbitofrontal cortex (lOFC) have shown that subsets of neurons that encode distinct aspects of behavior, such as value, may project to common …
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