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Bringing people and ideas together to fund, conduct, and share transformative science.

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The Flatiron Institute is a research center that uses computational science to advance fields like physics, biology, and astronomy.

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Featured

Dissecting mechanisms of hyperarousal in autism and related disorders using the Simons Sleep Project

Funded Work

Gravity Follows Newton’s and Einstein’s Rules, Even at Cosmic Scales

April 15, 2026

Scientists Capture Superconductivity’s ‘Dancing Pairs’ for First Time, Filling Gap in Decades-Old Theory

April 15, 2026

How SURFiN Fellowships Jump-Started These 3 Neuroscience Students’ STEM Careers

March 18, 2026

Results

  1. Quantifying the Impact of the Large Magellanic Cloud on the Structure of the Milky Way's Dark Matter Halo Using Basis Function Expansions

    Publication
    Indications of disequilibrium throughout the Milky Way (MW) highlight the need for compact, flexible, non-parametric descriptions of phase–space distributions of galaxies. We present a new representation …
  2. Analysis of gait synchrony and balance in neurodevelopmental disorders using computer vision techniques.

    Publication
  3. Probing mechanisms of visual spatial attention in mice.

    Publication
  4. Single-cell epigenomics reveals mechanisms of human cortical development.

    Publication
  5. Bayesian inference with incomplete knowledge explains perceptual confidence and its deviations from accuracy

    Publication
    In perceptual decisions, subjects infer hidden states of the environment based on noisy sensory information. Here we show that both choice and its associated confidence are explained by …
  6. Regulation of prefrontal patterning and connectivity by retinoic acid.

    Publication
  7. Psychological distress among caregivers raising a child with autism spectrum disorder during the COVID-19 pandemic.

    Publication
  8. Placental endocrine function shapes cerebellar development and social behavior.

    Publication
  9. Systemic enhancement of serotonin signaling reverses social deficits in multiple mouse models for ASD.

    Publication
  10. Social and non-social sensory responsivity in toddlers at high-risk for autism spectrum disorder.

    Publication
  11. A human pleiotropic multiorgan condition caused by deficient Wnt secretion.

    Publication
  12. Cerebrospinal fluid is a significant fluid source for anoxic cerebral oedema

    Publication
    Cerebral edema develops after anoxic brain injury. In two models of asphyxial and asystolic cardiac arrest without resuscitation, we found that edema develops shortly after anoxia secondary to …
  13. Bayesian Hierarchical Stacking: Some Models Are (Somewhere) Useful

    Publication
    Stacking is a widely used model averaging technique that asymptotically yields optimal predictions among linear averages. We show that stacking is most effective when model predictive performance is …
  14. CeAid: a smartphone application for logging and plotting Caenorhabditis elegans assays

    Publication
    Caenorhabditis elegans is used as a model organism to study a wide range of topics in molecular and cellular biology. Conventional C. elegans assays often require a large …
  15. miRNATissueAtlas2: an update to the human miRNA tissue atlas

    Publication
    Small non-coding RNAs (sncRNAs) are pervasive regulators of physiological and pathological processes. We previously developed the human miRNA Tissue Atlas, detailing the expression of miRNAs across organs …
  16. Hippocampal replay of experience at real-world speeds

    Publication
    Representations related to past experiences play a critical role in memory and decision-making processes. The rat hippocampus expresses these types of representations during sharp-wave ripple (SWR …
  17. A stable population code for attention in prefrontal cortex leads a dynamic attention code in visual cortex

    Publication
    … that prefrontal cortical signals would predict attention signals in visual cortex, in line with the hypothesized role of prefrontal cortex in top-down executive control. Our results …
  18. Spatial modulation of dark versus bright stimulus responses in the mouse visual system.

    Publication
  19. A2A: 21 000 bulge stars from the ARGOS survey with stellar parameters on the APOGEE scale

    Publication
    We use the data-driven method, The Cannon, to bring 21,000 stars from the ARGOS bulge survey, including 10,000 red clump stars, onto the parameter and …
  20. A2A: 21 000 bulge stars from the ARGOS survey with stellar parameters on the APOGEE scale

    Publication
    Aims. Spectroscopic surveys have by now collectively observed tens of thousands of stars in the bulge of our Galaxy. However, each of these surveys had unique observing and …
  21. The challenge of simultaneously matching the observed diversity of chemical abundance patterns in cosmological hydrodynamical simulations

    Publication
    With the advent of large spectroscopic surveys the amount of high quality chemodynamical data in the Milky Way (MW) increased tremendously. Accurately and correctly capturing and explaining the …
  22. Protein-coding repeat polymorphisms strongly shape diverse human phenotypes

    Publication
  23. Protein-coding repeat polymorphisms strongly shape diverse human phenotypes [Update]

    Publication
    [Figure: see text].
  24. Partitioning variability in animal behavioral videos using semi-supervised variational autoencoders

    Publication
    ecent neuroscience studies demonstrate that a deeper understanding of brain function requires a deeper understanding of behavior. Detailed behavioral measurements are now often collected using video cameras, resulting …
  25. Genetic and epigenetic coordination of cortical interneuron development

    Publication
    One of the hallmarks of the cerebral cortex is the extreme diversity of interneurons. The two largest subtypes of cortical interneurons, parvalbumin- and somatostatin-positive cells, are morphologically …
  26. Can small-scale baryon inhomogeneities resolve the Hubble tension? An investigation with ACT DR4

    Publication
    Small-scale inhomogeneities in the baryon density around recombination have been proposed as a solution to the tension between local and global determinations of the Hubble constant. These …
  27. Cognitive, Systems, and Computational Neurosciences of the Self in Motion

    Publication
    Navigating by path integration requires continuously estimating one's self-motion. This estimate may be derived from visual velocity and/or vestibular acceleration signals. Importantly, these senses in …
  28. Improving rigor and reproducibility in nonhuman primate research

    Publication
    Nonhuman primates (NHPs) are a critical component of translational/preclinical biomedical research due to the strong similarities between NHP and human physiology and disease pathology. In some cases …
  29. A database and deep learning toolbox for noise-optimized, generalized spike inference from calcium imaging

    Publication
    Inference of action potentials ('spikes') from neuronal calcium signals is complicated by the scarcity of simultaneous measurements of action potentials and calcium signals ('ground truth'). In this study …
  30. Prefrontal cortical activity predicts the occurrence of nonlocal hippocampal representations during spatial navigation

    Publication
    The receptive field of a neuron describes the regions of a stimulus space where the neuron is consistently active. Sparse spiking outside of the receptive field is often …
  31. Interpreting neural computations by examining intrinsic and embedding dimensionality of neural activity

    Publication
    The ongoing exponential rise in recording capacity calls for new approaches for analysing and interpreting neural data. Effective dimensionality has emerged as an important property of neural activity …
  32. The Glymphatic System: A Novel Component of Fundamental Neurobiology

    Publication
    Throughout the body, lymphatic fluid movement supports critical functions including clearance of excess fluid and metabolic waste. The glymphatic system is the analog of the lymphatic system in …
  33. A dopamine gradient controls access to distributed working memory in the large-scale monkey cortex

    Publication
    Dopamine is required for working memory, but how it modulates the large-scale cortex is unknown. Here, we report that dopamine receptor density per neuron, measured by autoradiography …
  34. A precise and adaptive neural mechanism for predictive temporal processing in the frontal cortex

    Publication
    The theory of predictive processing posits that the brain computes expectations to process information predictively. Empirical evidence in support of this theory, however, is scarce and largely limited …
  35. Adaptation and serial choice bias are unaltered in autism.

    Publication
  36. Chromatin and gene-regulatory dynamics of the developing human cerebral cortex at single-cell resolution.

    Publication
  37. Distinct population code for movement kinematics and changes of ongoing movements in human subthalamic nucleus

    Publication
    The subthalamic nucleus (STN) is theorized to globally suppress movement through connections with downstream basal ganglia structures. Current theories are supported by increased STN activity when subjects withhold …
  38. Genetic counseling as preventive intervention: Toward individual specification of transgenerational autism risk.

    Publication
  39. Predictive encoding of motion begins in the primate retina

    Publication
    Predictive motion encoding is an important aspect of visually guided behavior that allows animals to estimate the trajectory of moving objects. Motion prediction is understood primarily in the …
  40. Human neuronal networks on micro-electrode arrays are a highly robust tool to study disease-specific genotype-phenotype correlations in vitro.

    Publication
  41. Imaging faster neural dynamics with fast fMRI: A need for updated models of the hemodynamic response

    Publication
    Fast fMRI enables the detection of neural dynamics over timescales of hundreds of milliseconds, suggesting it may provide a new avenue for studying subsecond neural processes in the …
  42. Resolving local and global kinematic signatures of satellite mergers with billion particle simulations

    Publication
    In this work, we present two new ∼109 particle self-consistent simulations of the merger of a Sagittarius-like dwarf galaxy with a Milky Way (MW)-like disc …
  43. Global 3D Radiation Hydrodynamic Simulations of Proto-Jupiter's Convective Envelope

    Publication
    The core accretion model of giant planet formation has been challenged by the discovery of recycling flows between the planetary envelope and the disc that can slow or …
  44. Fasting blood glucose as a predictor of mortality: Lost in translation

    Publication
    Aging leads to profound changes in glucose homeostasis, weight, and adiposity, which are considered good predictors of health and survival in humans. Direct evidence that these age-associated …
  45. ABACUSSUMMIT: a massive set of high-accuracy, high-resolution N-body simulations

    Publication
    We present the public data release of the AbacusSummit cosmological N-body simulation suite, produced with the 𝙰𝚋𝚊𝚌𝚞𝚜 N-body code on the Summit supercomputer of the Oak Ridge …
  46. Distance-tuned neurons drive specialized path integration calculations in medial entorhinal cortex

    Publication
    During navigation, animals estimate their position using path integration and landmarks, engaging many brain areas. Whether these areas follow specialized or universal cue integration principles remains incompletely understood …
  47. GDF11 expressed in the adult brain negatively regulates hippocampal neurogenesis

    Publication
    Growth differentiation factor 11 (GDF11) is a transforming factor-β superfamily member that functions as a negative regulator of neurogenesis during embryonic development. However, when recombinant GDF11 (rGDF11 …
  48. SUPERGNOVA: Local genetic correlation analysis reveals heterogeneous etiologic sharing of complex traits.

    Publication
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