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  • Founded by Jim and Marilyn Simons, we’re a private philanthropy advancing mathematics and basic science.

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Bringing people and ideas together to fund, conduct, and share transformative science.

Our grants advance knowledge and strengthen connections between science and society.

Discover the latest news, research, and updates.

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We convene scientists, mathematicians, and thinkers to share ideas and explore new questions.

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Founded by Jim and Marilyn Simons, we’re a private philanthropy advancing mathematics and basic science.

Work with us on the frontier of basic science research.

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The Flatiron Institute is a research center that uses computational science to advance fields like physics, biology, and astronomy.

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Featured

Dissecting mechanisms of hyperarousal in autism and related disorders using the Simons Sleep Project

Funded Work

Gravity Follows Newton’s and Einstein’s Rules, Even at Cosmic Scales

April 15, 2026

Scientists Capture Superconductivity’s ‘Dancing Pairs’ for First Time, Filling Gap in Decades-Old Theory

April 15, 2026

How SURFiN Fellowships Jump-Started These 3 Neuroscience Students’ STEM Careers

March 18, 2026

Results

  1. Autism-associated biomarkers: Test–retest reliability and relationship to quantitative social trait variation in rhesus monkeys.

    Publication
  2. Maternal steroid levels and the autistic traits of the mother and infant.

    Publication
  3. Age-Related Tau Burden and Cognitive Deficits Are Attenuated in KLOTHO KL-VS Heterozygotes

    Publication
  4. Aged hematopoietic stem cells are refractory to bloodborne systemic rejuvenation interventions

    Publication
  5. Inverse-Dirichlet Weighting Enables Reliable Training of Physics Informed Neural Networks

    Publication
    We characterize and remedy a failure mode that may arise from multi-scale dynamics with scale imbalances during training of deep neural networks, such as Physics Informed Neural …
  6. Atypical gaze patterns in autism are heterogeneous across subjects but reliable within individuals.

    Publication
  7. Multi-scale tensor network architecture for machine learning

    Publication
  8. Genetic signature of human longevity in PKC and NF-κB signaling

    Publication
    Gene variants associated with longevity are also associated with protection against cognitive decline, dementia and Alzheimer's disease, suggesting that common physiologic pathways act at the interface of …
  9. Mice in a labyrinth show rapid learning, sudden insight, and efficient exploration

    Publication
    Animals learn certain complex tasks remarkably fast, sometimes after a single experience. What behavioral algorithms support this efficiency? Many contemporary studies based on two-alternative-forced-choice (2AFC …
  10. A fast link between face perception and memory in the temporal pole

    Publication
    The question of how the brain recognizes the faces of familiar individuals has been important throughout the history of neuroscience. Cells linking visual processing to person memory have …
  11. A Bayesian approach for extracting free energy profiles from cryo-electron microscopy experiments using a path collective variable

    Publication
    Cryo-electron microscopy (cryo-EM) extracts single-particle density projections of individual biomolecules. Although cryo-EM is widely used for 3D reconstruction, due to its single-particle nature …
  12. Regression models for compositional data: General log-contrast formulations, proximal optimization, and microbiome data applications

    Publication
    Compositional data sets are ubiquitous in science, including geology, ecology, and microbiology. In microbiome research, compositional data primarily arise from high-throughput sequence-based profiling experiments. These data …
  13. Autism-linked Cullin3 germline haploinsufficiency impacts cytoskeletal dynamics and cortical neurogenesis through RhoA signaling.

    Publication
  14. Innate immunity at the crossroads of healthy brain maturation and neurodevelopmental disorders.

    Publication
  15. Cell-type-specific synaptic imbalance and disrupted homeostatic plasticity in cortical circuits of ASD-associated Chd8 haploinsufficient mice

    Publication
  16. Modulation of striatal functional connectivity differences in adults with and without autism spectrum disorder in a single-dose randomized trial of cannabidivarin.

    Publication
  17. Closing the species gap: Translational approaches to studying sensory processing differences relevant for autism spectrum disorder.

    Publication
  18. Autism symptoms in anorexia nervosa: A comparative study with females with autism spectrum disorder.

    Publication
  19. MHC class I H2-Kb negatively regulates neural progenitor cell proliferation by inhibiting FGFR signaling

    Publication
  20. A neural circuit state change underlying skilled movements

    Publication
  21. A fast Chebyshev method for the Bingham closure with application to active nematic suspensions

    Publication
    Continuum kinetic theories provide an important tool for the analysis and simulation of particle suspensions. When those particles are anisotropic, the addition of a particle orientation vector to …
  22. Modularity and robustness of frontal cortical networks

    Publication
  23. Resolving cell state in iPSC-derived human neural samples with multiplexed fluorescence imaging

    Publication
  24. How crosslink numbers shape the large-scale physics of cytoskeletal materials

    Publication
    Cytoskeletal networks are the main actuators of cellular mechanics, and a foundational example for active matter physics. In cytoskeletal networks, motion is generated on small scales by filaments …
  25. Novel epigenetic clock for fetal brain development predicts prenatal age for cellular stem cell models and derived neurons.

    Publication
  26. Experiences and lessons learned from two virtual, hands-on microbiome bioinformatics workshops

    Publication
    In October of 2020, in response to the Coronavirus Disease 2019 (COVID-19) pandemic, our team hosted our first fully online workshop teaching the QIIME 2 microbiome bioinformatics …
  27. A causal view on compositional data

    Publication
    Many scientific datasets are compositional in nature. Important examples include species abundances in ecology, rock compositions in geology, topic compositions in large-scale text corpora, and sequencing count …
  28. Identifying developing interneurons as a potential target for multiple genetic autism risk factors in human and rodent forebrain.

    Publication
  29. Estimating genetic nurture with summary statistics of multi-generational genome-wide association studies.

    Publication
  30. Methods for analyzing neuronal structure and activity in Caenorhabditis elegans

    Publication
  31. Reflections on the genetics-first approach to advancements in molecular genetic and neurobiological research on neurodevelopmental disorders.

    Publication
  32. Representational geometry of perceptual decisions in the monkey parietal cortex

    Publication
  33. Dendritic calcium signals in rhesus macaque motor cortex drive an optical brain-computer interface

    Publication
  34. Geometry of abstract learned knowledge in the hippocampus

    Publication
  35. Visual intracortical and transthalamic pathways carry distinct information to cortical areas

    Publication
    Sensory processing involves information flow between neocortical areas, assumed to rely on direct intracortical projections. However, cortical areas may also communicate indirectly via higher-order nuclei in the …
  36. Sensorimotor strategies and neuronal representations for shape discrimination

    Publication
  37. Neuronal variability reflects probabilistic inference tuned to natural image statistics

    Publication
  38. Computational neuroimaging of cognition-emotion interactions: Affective and task-similar interference differentially impact working memory.

    Publication
  39. Microtubule reorganization during female meiosis in C. elegans

    Publication
    Most female meiotic spindles undergo striking morphological changes while transitioning from metaphase to anaphase. The ultra-structure of meiotic spindles, and how changes to this structure correlate with …
  40. Nonlinear Decoding of Natural Images From Large-Scale Primate Retinal Ganglion Recordings

    Publication
    Decoding sensory stimuli from neural activity can provide insight into how the nervous system might interpret the physical environment, and facilitates the development of brain-machine interfaces. Nevertheless …
  41. Oleic Acid Protects Caenorhabditis Mothers From Mating-Induced Death and the Cost of Reproduction

    Publication
  42. Internal state: dynamic, interconnected communication loops distributed across body, brain, and time

    Publication
  43. Unsupervised changes in core object recognition behavior are predicted by neural plasticity in inferior temporal cortex

    Publication
  44. Metallic Microswimmers Driven up the Wall by Gravity

    Publication
    Experiments on autophoretic bimetallic nanorods propelling within a fuel of hydrogen peroxide show that tail-heavy swimmers preferentially orient upwards and ascend along inclined planes. We show that …
  45. Representational drift in primary olfactory cortex

    Publication
  46. Diminished cortical excitation and elevated inhibition during perceptual impairments in a mouse model of autism.

    Publication
  47. Temporal integration of inductive cues on the way to gastrulation

    Publication
    In early development, cells commit to a single germ fate despite receiving multiple, conflicting inductive cues. Here, we examine how cells in the Drosophila embryo integrate promesodermal and …
  48. A Suite of Neurophotonic Tools to Underpin the Contribution of Internal Brain States in fMRI

    Publication
    Recent developments in optical microscopy, applicable for large-scale and longitudinal imaging of cortical activity in behaving animals, open unprecedented opportunities to gain a deeper understanding of neurovascular …
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