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  • Founded by Jim and Marilyn Simons, we’re a private philanthropy advancing mathematics and basic science.

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Bringing people and ideas together to fund, conduct, and share transformative science.

Our grants advance knowledge and strengthen connections between science and society.

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Founded by Jim and Marilyn Simons, we’re a private philanthropy advancing mathematics and basic science.

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The Flatiron Institute is a research center that uses computational science to advance fields like physics, biology, and astronomy.

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Featured

Dissecting mechanisms of hyperarousal in autism and related disorders using the Simons Sleep Project

Funded Work

Gravity Follows Newton’s and Einstein’s Rules, Even at Cosmic Scales

April 15, 2026

Scientists Capture Superconductivity’s ‘Dancing Pairs’ for First Time, Filling Gap in Decades-Old Theory

April 15, 2026

How SURFiN Fellowships Jump-Started These 3 Neuroscience Students’ STEM Careers

March 18, 2026

Results

  1. Chemodynamically Characterizing the Jhelum Stellar Stream with APOGEE-2

    Publication
    We present the kinematic and chemical profiles of red giant stars observed by the APOGEE-2 survey in the direction of the Jhelum stellar stream, a Milky Way …
  2. cuFINUFFT: a load-balanced GPU library for general-purpose nonuniform FFTs

    Publication
    Nonuniform fast Fourier transforms dominate the computational cost in many applications including image reconstruction and signal processing. We thus present a general-purpose GPU-based CUDA library for …
  3. Effects of Aerobic Exercise Training on Systemic Biomarkers and Cognition in Late Middle-Aged Adults at Risk for Alzheimer's Disease

    Publication
  4. Standardized and reproducible measurement of decision-making in mice

    Publication
    Progress in science requires standardized assays whose results can be readily shared, compared, and reproduced across laboratories. Reproducibility, however, has been a concern in neuroscience, particularly for measurements …
  5. Altered maturation and atypical cortical processing of spoken sentences in autism spectrum disorder.

    Publication
  6. A Stellar Activity F-statistic for Exoplanet Surveys (SAFE)

    Publication
    In the search for planets orbiting distant stars the presence of stellar activity in the atmospheres of observed stars can obscure the radial velocity signal used to detect …
  7. Accelerating diagnosis of Parkinson's disease through risk prediction

    Publication
  8. Accelerating diagnosis of Parkinson's disease through risk prediction

    Publication
    Background: Characterization of prediagnostic Parkinson's Disease (PD) and early prediction of subsequent development are critical for preventive interventions, risk stratification and understanding of disease pathology. This study …
  9. A method to delineate de novo missense variants across pathways prioritizes genes linked to autism.

    Publication
  10. COVID-19 health and social care access for autistic people: European policy review.

    Publication
  11. Genomic selection signatures in autism spectrum disorder identifies cognitive genomic tradeoff and its relevance in paradoxical phenotypes of deficits versus potentialities.

    Publication
  12. Imbalanced social-communicative and restricted repetitive behavior subtypes of autism spectrum disorder exhibit different neural circuitry.

    Publication
  13. CMB lensing power spectrum estimation without instrument noise bias

    Publication
    The power spectrum of cosmic microwave background (CMB) lensing will be measured to sub-percent precision with upcoming surveys, enabling tight constraints on the sum of neutrino masses …
  14. Bayonet-shaped language development in autism with regression: A retrospective study.

    Publication
  15. AI-assisted super-resolution cosmological simulations

    Publication
    Cosmological simulations of galaxy formation are limited by finite computational resources. We draw from the ongoing rapid advances in Artificial Intelligence (specifically Deep Learning) to address this problem …
  16. Single nucleus multi-omics regulatory atlas of the murine pituitary

    Publication
    To provide a multi-omics resource and investigate transcriptional regulatory mechanisms, we profile the transcriptome, chromatin accessibility, and methylation status of over 70,000 single nuclei (sn) from …
  17. Individuals with autism spectrum disorder have altered visual encoding capacity.

    Publication
  18. High-performance brain-to-text communication via handwriting

    Publication
    Brain-computer interfaces (BCIs) can restore communication to people who have lost the ability to move or speak. So far, a major focus of BCI research has been …
  19. Recovering missing data in coherent diffraction imaging

    Publication
    In coherent diffraction imaging (CDI) experiments, the intensity of the scattered wave impinging on an object is measured on an array of detectors. This signal can be interpreted …
  20. A unified resource and configurable model of the synapse proteome and its role in disease.

    Publication
  21. Broad frequency sensitivity and complex neural coding in the larval zebrafish auditory system.

    Publication
  22. Chandelier cartridge density is reduced in the prefrontal cortex in autism.

    Publication
  23. Genoppi is an open-source software for robust and standardized integration of proteomic and genetic data.

    Publication
  24. Optimising a simple fully convolutional network for accurate brain age prediction in the PAC 2019 challenge.

    Publication
  25. Rare variant analysis of 4241 pulmonary arterial hypertension cases from an international consortium implicates FBLN2, PDGFD, and rare de novo variants in PAH.

    Publication
  26. Integrating barcoded neuroanatomy with spatial transcriptional profiling enables identification of gene correlates of projections.

    Publication
  27. An investigation of the diet, exercise, sleep, BMI, and health outcomes of autistic adults.

    Publication
  28. Sex and death

    Publication
    Sexual interactions negatively impact health and longevity in many species across the animal kingdom. C. elegans has been established as a good model to study how mating and …
  29. Rhesus monkeys as a translational model for late-onset Alzheimer's disease

    Publication
    Age is a major risk factor for late-onset Alzheimer's disease (AD) but seldom features in laboratory models of the disease. Furthermore, heterogeneity in size and density …
  30. Fluid Transport in the Brain

    Publication
    Brain harbors a unique ability to, figuratively speaking, shift its gears. During wakefulness, the brain is geared fully towards processing information and behaving, while homeostatic functions predominate during …
  31. AI-assisted superresolution cosmological simulations

    Publication
    Cosmological simulations of galaxy formation are limited by finite computational resources. We draw from the ongoing rapid advances in Artificial Intelligence (specifically Deep Learning) to address this problem …
  32. Pinpointing the neural signatures of single-exposure visual recognition memory

    Publication
    Memories of the images that we have seen are thought to be reflected in the reduction of neural responses in high-level visual areas such as inferotemporal (IT …
  33. Pinpointing the neural signatures of single-exposure visual recognition memory

    Publication
    Memories of the images that we have seen are thought to be reflected in the reduction of neural responses in high-level visual areas such as inferotemporal (IT …
  34. Single-cell gene regulatory network inference at scale: The Inferelator 3.0

    Publication
    Gene regulatory networks define regulatory relationships between transcription factors and target genes within a biological system, and reconstructing them is essential for understanding cellular growth and function. In …
  35. Gene-environment correlations and causal effects of childhood maltreatment on physical and mental health: A genetically informed approach.

    Publication
  36. AI-assisted super-resolution cosmological simulations II: Halo substructures, velocities and higher order statistics

    Publication
  37. Reduced insulin/IGF1 signaling prevents immune aging via ZIP-10/bZIP-mediated feedforward loop

    Publication
    A hallmark of aging is immunosenescence, a decline in immune functions, which appeared to be inevitable in living organisms, including Caenorhabditis elegans. Here, we show that genetic inhibition …
  38. Age-related telomere attrition causes aberrant gene expression in sub-telomeric regions

    Publication
    Telomere attrition has been proposed as a biomarker and causal factor in aging. In addition to causing cellular senescence and apoptosis, telomere shortening has been found to affect …
  39. Discovery of autism/intellectual disability somatic mutations in Alzheimer's brains: mutated ADNP cytoskeletal impairments and repair as a case study

    Publication
  40. Assessing child postural variability: Development, feasibility, and reliability of a video coding system.

    Publication
  41. A hydraulic instability drives the cell death decision in the nematode germline

    Publication
    Oocytes are large cells that develop into an embryo upon fertilization1. As interconnected germ cells mature into oocytes, some of them grow—typically at the expense of others …
  42. Muonium hydride: The lowest density crystal

    Publication
  43. Simulations of Trions and Biexcitons in Layered Hybrid Organic-Inorganic Lead Halide Perovskites

    Publication
  44. Optimal control for quantum metrology via Pontryagin’s principle

    Publication
  45. Designing and controlling the properties of transition metal oxide quantum materials

    Publication
    This Perspective addresses the design, creation, characterization and control of synthetic quantum materials with strong electronic correlations. We show how emerging synergies between theoretical/computational approaches and materials …
  46. Dependence of DFT+DMFT results on the construction of the correlated orbitals

    Publication
  47. Generation of fate patterns via intercellular forces.

    Publication
  48. A stable and accurate scheme for solving the Stefan problem coupled with natural convection using the Immersed Boundary Smooth Extension method

    Publication
    In cellular vortical flows, short but flexible filaments can show simple random walks through their stretch-coil interactions with flow stagnation points. Here, we study the dynamics of …
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