Publications
Read the latest papers published by our research teams.
Results
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Fused regression for multi-source gene regulatory network inference
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Bosonic self-energy functional theory
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Rotamer libraries for the high-resolution design of beta-amino acid foldamers
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A Survey of High Level Frameworks in Block-Structured Adaptive Mesh Refinement Packages
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Accurate de novo design of hyperstable constrained peptides
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Fast convolution with free-space Green’s functions
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Integral Equation Methods for Elastance and Mobility Problems in Two Dimensions
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EGRINs (Environmental Gene Regulatory Influence Networks) in rice that function in the response to water deficit, high temperature, and agricultural environments
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An expanded evaluation of protein function prediction methods shows an improvement in accuracy
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PPII Helical Peptidomimetics Templated by Cation–π Interactions
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Side-Chain Conformational Preferences Govern Protein–Protein Interactions
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On the stability of time-domain integral equations for acoustic wave propagation
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Integrative neuromechanics of crawling in D. melanogaster larvae
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Racemization barriers of atropisomeric 3,3′-bipyrroles: an experimental study with theoretical verification
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A damage-independent role for 53BP1 that impacts break order and Igh architecture during class switch recombination
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DDX5 and its associated lncRNA Rmrp modulate Th17 cell effector functions
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Fast, adaptive, high order accurate discretization of the Lippmann-Schwinger equation in two dimension
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Active and inactive enhancers cooperate to exert localized and long-range control of gene regulation
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Generalized Stability Approach for Regularized Graphical Models
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Population-Level Representation of a Temporal Sequence Underlying Song Production in the Zebra Finch
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Validation of neural spike sorting algorithms without ground-truth information
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Helminth infection promotes colonization resistance via type 2 immunity
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Neocortex: a lean mean memory storage machine
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Neocortex: a lean mean storage machine
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Derivation of Neural Circuits from the Similarity Matching Principle
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Big Data, Social Media, and Protest
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Mediator facilitates transcriptional activation and dynamic long-range contacts at the IgH locus during class switch recombination
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Do retinal ganglion cells project natural scenes to their principal subspace and whiten them?
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Self-calibrating neural networks for dimensionality reduction
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Environmental gene regulatory influence networks in rice (Oryza sativa): response to water deficit, high temperature and agricultural environments
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4C-ker: a method to reproducibly identify genome-wide interactions captured by 4C-Seq experiments
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Tweeting identity? Ukrainian, Russian, and# Euromaidan
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Robust classification of protein variation using structural modelling and large-scale data integration
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Inferring causal molecular networks: empirical assessment through a community-based effort
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Fast Direct Methods for Gaussian Processes
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A Miniature Protein Stabilized by a Cation− π Interaction Network
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Text Classification for Automatic Detection of E-Cigarette Use and Use for Smoking Cessation from Twitter: A Feasibility Pilot
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Simultaneous Denoising, Deconvolution, and Demixing of Calcium Imaging Data
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Antibiotic perturbation of the murine gut microbiome enhances the adiposity, insulin resistance, and liver disease associated with high-fat diet
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Bacillus subtilis Systems Biology: Applications of -Omics Techniques to the Study of Endospore Formation
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Biophysically Motivated Regulatory Network Inference: Progress and Prospects
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Breaking TADs: insights into hierarchical genome organization
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Acute off-target effects of neural circuit manipulations
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A Normative Theory of Adaptive Dimensionality Reduction in Neural Networks
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To Myelinate or Not to Myelinate?
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The Critical Periphery in the Growth of Social Protests
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Toward rational thermostabilization of Aspergillus oryzae cutinase: Insights into catalytic and structural stability
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Multiple abiotic stimuli are integrated in the regulation of rice gene expression under field conditions