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Bringing people and ideas together to fund, conduct, and share transformative science.

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The Flatiron Institute is a research center that uses computational science to advance fields like physics, biology, and astronomy.

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Featured

Dissecting mechanisms of hyperarousal in autism and related disorders using the Simons Sleep Project

Funded Work

Gravity Follows Newton’s and Einstein’s Rules, Even at Cosmic Scales

April 15, 2026

Scientists Capture Superconductivity’s ‘Dancing Pairs’ for First Time, Filling Gap in Decades-Old Theory

April 15, 2026

How SURFiN Fellowships Jump-Started These 3 Neuroscience Students’ STEM Careers

March 18, 2026

Results

  1. Mysteries of Fruit Fly Sperm Untangled by Mathematical Models

    July 22, 2026
    Biologists at the Simons Foundation’s Flatiron Institute and their colleagues strive to better understand remarkable living systems by bringing biology and mathematics into closer dialogue.
  2. Beyond the Cryo-EM Resolution Revolution

    June 23, 2026
    … cryo-EM data. To create the most useful tools, Flatiron researchers brought together an interdisciplinary cohort of investigators to provide input. Cossio and computational biophysicist Sonya Hanson …
  3. How Mathematical Modeling Identified Subclasses of Autism

    June 23, 2026
    … work.”
  4. Alumni Spotlight: Gokberk Kabacaoglu

    May 15, 2026
    Kabacaoglu, a former research fellow at the Simons Foundation’s Flatiron Institute, is now an assistant professor in the Department of Computer Science at Durham University in England …
  5. Alumni Spotlight: Jamie Morton

    May 6, 2026
    Collaborations during Morton’s time as an associate research scientist at the Simons Foundation’s Flatiron Institute inspired his new startup.
  6. Pilar Cossio: Reconstructing RNA’s Shapeshifting Behavior

    April 28, 2026
    Flatiron Institute Senior Research Scientist Pilar Cossio builds tools to analyze experimental measurements and reveal how environmental changes alter the behavior of RNA molecules.
  7. The Machinery That Helps Divide Your Cells Self-Organizes Like an Active Liquid Crystal

    February 12, 2026
    Flatiron Institute scientists and experimental collaborators tested a theory that treats chromosome-separating cellular structures called spindles as active liquid crystals. They found that the theory largely succeeds …
  8. A Tug-of-War Explains a Decades-Old Question About How Bacteria Swim

    January 8, 2026
    Bacteria tails rotate counterclockwise to propel the bacteria through liquid environments and clockwise to change direction. Previous research has suggested that the direction of the spin depends on …
  9. From Ring to Keyhole: Modeling How Tissues Mold the Fruit Fly’s Gut

    November 17, 2025
    Researchers at the Flatiron Institute’s Center for Computational Biology and their collaborators from Princeton University and the Max Planck Institute in Dresden, Germany, use experimental and computational …
  10. New Study Reveals Subclasses of Autism by Linking Traits to Genetics

    July 9, 2025
    An analysis of more than 5,000 individuals with autism reveals four distinct groups that link autism-related traits with underlying genetics. The work could open the door …
  11. New Model Predicts How Bacteria Navigate Obstacles To Spread

    March 21, 2025
    A Flatiron Institute scientist has developed the first analytical model for predicting how bacteria spread in environments filled with obstacles. This model will help inform strategies for curbing …
  12. Claustrophobic Cells Slow Their Own Growth, Forming Beautiful Patterns of Concentric Circles

    October 10, 2024
    Through simulations and modeling of bacterial colonies, researchers at the Flatiron Institute and collaborators have discovered how dividing cells adapt to crowded environments by slowing their growth, informing …
  13. Physics-Informed AI Method Could Help Make CRISPR Safer

    May 20, 2024
    CRISPR promises to be a game changer in the development of treatments for genetic diseases, but sometimes the technology slices DNA where it’s not supposed to. A …
  14. Researchers Crack Mystery of Swirling Vortexes in Egg Cells

    April 17, 2024
    New research led by Flatiron Institute researchers reveals the source of the mysterious swirling flows in some of nature’s largest cells.
  15. CCB Flatiron Research Fellow Miro Astore Awarded Young Biophysicist Award

    January 26, 2024
    Last month, Flatiron Institute postdoc Miro Astore received the Young Biophysicist Award at the 47th Annual Conference of the Australian Society for Biophysics. The award was established in …
  16. All Five Flatiron Centers Represented at the Conference on Neural Information Processing Systems (NeurIPS)

    December 8, 2023
    For the first time, the five Flatiron Institute research centers (astrophysics, biology, mathematics, neuroscience and quantum physics), as well as its Scientific Computing Core and the Foundation Models …
  17. Experiments and Mathematical Model Uncover the Mechanisms Behind Wrinkles in Cell Nuclei

    November 3, 2023
    By studying the changing geometry of cell nuclei in fruit flies, scientists have gained a better understanding of the dynamics that shape the part of our cells that …
  18. Moving in Harmony

    June 21, 2023
    Flatiron Institute Research Fellow Brato Chakrabarti studies how tiny objects in our bodies work collectively to make big waves.
  19. Cutting-Edge Computational Study Provides ‘Gut Check’ to How We Thought Proteins Function

    April 28, 2023
    In using AI-powered tools to map proteins in the human gut microbiome, researchers have challenged the traditional view of the relationship between protein sequence, structure and function.
  20. Going With the Flow: Mapping Vascular Systems in Fruit Flies

    April 3, 2023
    In her studies of insects, Flatiron Institute Research Fellow Tatyana Gavrilchenko is gaining new insights into the complexities of the vasculature system — work that could inform efforts at …
  21. Why Don’t Disease-Linked Genetic Mutations Always Result in Disease? A Study in Fruit Flies Offers New Clues

    March 13, 2023
    By harnessing both experimental and computational methods, researchers have identified a significant role for randomness in disease manifestation.
  22. New Testing Approach Diagnoses COVID-19 With Near-Perfect Accuracy

    February 27, 2023
    By monitoring the body’s molecular response to a viral attack, the new method developed by Flatiron Institute researchers and their colleagues can diagnose even asymptomatic patients with …
  23. Simons Foundation Scientists Named as Sloan Research Fellows

    February 16, 2023
    The Alfred P. Sloan Foundation has awarded its prestigious research fellowship to four past and present Simons Foundation researchers. This year’s 125 fellowship recipients “represent the most …
  24. Computational Biology Goes Under the Microscope

    February 14, 2023
    A new facility at the Flatiron Institute’s Center for Computational Biology (CCB) bridges the gap between experimental and theoretical biology, allowing researchers to take big steps toward …
  25. Small Cell, Big Picture: Fundamental Biology Through the Lens of Simplified Models

    January 26, 2023
    The nucleus of a cell may only be one-thousandth of a centimeter in diameter, but that doesn’t stop biophysicist Alex Rautu from seeing the big picture.
  26. Big Data and Powerful Computing Join Forces To Link DNA Sequence and Function

    January 24, 2023
    Built from one of the world’s largest collections of epigenetic data, the newly developed model Sei predicts how DNA sequence variation alters gene expression, advancing our understanding …
  27. The Fruit Fly Photographer

    October 3, 2022
    Developmental biologist Jasmin Imran Alsous knows that it takes a village to raise an egg cell. At the Flatiron Institute, she and her collaborators are working together to …
  28. The RNA Detective

    August 9, 2022
    At the Flatiron Institute, Christopher Park studies how mutations in RNA might play a role in neuropsychiatric conditions like autism, schizophrenia and ADHD.
  29. CCB Director Michael Shelley and Simons-Supported Researchers Elected to National Academy of Sciences

    May 6, 2022
    … New York University Courant Institute
  30. New Model Shows How Cilia Make Waves

    March 17, 2022
    By building a biophysical model that incorporates real-world biological complexity, scientists discover important links between the nanometer-sized motors that power a cell’s cilia and the …
  31. A Machine-Learning Framework for Prioritizing Disease-Associated Enhancers

    January 25, 2022
    Olga Troyanskaya and colleagues developed a bioinformatics framework for the identification and prioritization of disease-associated enhancers.
  32. A ‘Forest Fire’ Model of Cell Division Can Explain Clonal Dominance in Developing Tissue

    December 14, 2021
    A new study reveals that communication between cells encasing the developing fruit fly egg chamber induces unequal cell division, shedding light on a fundamental biological process.
  33. NetQuilt: A Powerful Computational Approach for Predicting Protein Function

    October 5, 2021
    By stitching together an unprecedented diversity of data, a new software platform has enabled scientists to robustly predict what proteins do.
  34. Fruit Fly Egg Takes an Active Hand in Its Own Growth, Highlighting Parallels to Mammals

    March 22, 2021
    … the sheet of follicle cells that surrounds it. “These two tissue types need to grow together, and later, the follicle cells that stay over the nurse cells …
  35. CCB and CCM Collaborate To Create the New Structural and Molecular Biophysics Team

    February 4, 2021
    Underlying all biological processes are molecules and their interactions with each other. However, our ability to understand how these molecules function over biologically relevant scales remains very limited …
  36. Mathematics Explains How Giant Whirlpools Form in Developing Egg Cells

    January 13, 2021
    The swirling currents occur when the rodlike structures that extend inward from the cells’ membranes bend together like wheat stalks caught in a strong breeze, report researchers at …
  37. Unveiling the Forces Behind Millions of Years of Cell Division

    December 1, 2020
    In new research, scientists take a biophysical approach to deciphering the cell’s mysteries.
  38. Finding Signals in the Noise With HumanBase

    November 10, 2020
    This powerful, dynamic software system is changing how scientists sift through the recent deluge of human genomic data — and deepening our knowledge of human biology, health and disease.
  39. Molecular Processes in Kidney Cells May ‘Prime’ Diabetics for COVID-19 Infection

    October 23, 2020
    Vulnerable kidney cells undergo similar cellular processes during diabetic kidney disease and COVID-19 infection, potentially explaining why the two illnesses together are so deadly.
  40. A Software, a Community and a Different Way to Do Science

    July 30, 2020
    The suite of software tools collectively known as Rosetta is defined not only by what it does, but also by a community of scientists who are changing how …
  41. Computing the Egg: The Effort To Calculate Biological Development

    July 10, 2020
    … something similar about the fiery bodies racing across the sky until some bold thinkers cracked the patterns. As a reproducible and evolvable system subject to cutting-edge …
  42. Plasticity May Make Neurons Vulnerable to Alzheimer’s Disease

    June 29, 2020
    Neurons that regularly remodel are more prone to the dysfunctions linked to the disease’s onset, a new experimental and computational study finds.
  43. Mutations in Uncharted Territory

    April 29, 2020
    Genetic dark matter makes up 98 percent of our genomes, yet scientists are still figuring out how it works.
  44. Deciphering the Brain’s Algorithms

    April 9, 2020
    Solving the mysteries of the brain requires reverse engineering the rules and patterns that control it.
  45. The Flatiron Institute: A Home for Computational Sciences

    March 9, 2020
    The institute has grown from a beautiful proposal into a bustling hub for computational science in astrophysics, biology, mathematics and quantum physics.
  46. Beauty and the Brain

    February 5, 2020
    Cerebral fascinations: We asked our neuroscientists why they find the brain beautiful.
  47. You’re Not All Human: The Wonder of Gut Microbes

    January 30, 2020
    The finely tuned collection of bacteria, archaea and fungi collectively known as the microbiome hold an exquisite power that we are only beginning to recognize.
  48. Unexpected Forces Cause Rotor Proteins to Self-Organize

    December 3, 2019
    A model system exploring ATP synthase reveals that rotation, repulsion and flow can crystallize proteins. It may explain a biophysical mystery in mitochondrial membranes.
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