From the bioRxiv: A Selection of Recently Posted Papers from SCGB Investigators and Others

Each month, SCGB scans the bioRxiv and arXiv for interesting papers from the SCGB community and beyond.

Modeling functional cell types in spike train data

Daniel N Zdeblick, Eric T Shea-Brown, Daniela M Witten, and Michael A Buice

bioRxiv posted 1 March 2023

[Abstract] [PDF]

 

Brain-wide neural activity underlying memory-guided movement

Susu Chen, Yi Liu, Ziyue Wang, Jennifer Colonell, Liu D Liu, Han Hou, Nai-Wen Tien, Tim Wang, Timothy Harris, Shaul Druckmann, Nuo Li, and Karel Svoboda

bioRxiv posted 2 March 2023

[Abstract] [PDF]

 

Disentangling Mixed Classes of Covariability in Large-Scale Neural Data

Arthur Pellegrino, Heike Stein, and N Alex Cayco-Gajic

bioRxiv posted 2 March 2023

[Abstract] [PDF]

 

Probing inter-areal computations with a cellular resolution two-photon holographic mesoscope

Lamiae Abdeladim, Hyeyoung Shin, Uday Jagadisan, Mora Ogando, and Hillel Adesnik

bioRxiv posted 3 March 2023

[Abstract] [PDF]

 

The geometry of appetitive-aversive value representations in medial prefrontal networks

Nanci Winke, Cyril Herry, and Daniel Jercog

bioRxiv posted 3 March 2023

[Abstract] [PDF]

 

Homeostatic synaptic scaling optimizes learning in network models of neural population codes

Jonathan Mayzel and Elad Schneidman

bioRxiv posted 5 March 2023

[Abstract] [PDF]

 

Delayed formation of neural representations of space in aged mice

Kelsey D. McDermott, M. Agustina Frechou, Jake T. Jordan, Sunaina S Martin, and J. Tiago Goncalves

bioRxiv posted 9 March 2023

[Abstract] [PDF]

 

The neurocellular implementation of representational geometry in primate prefrontal cortex

Xiao-Xiong Lin, Andreas Nieder, and Simon N Jacob

bioRxiv posted 6 March 2023

[Abstract] [PDF]

 

A hippocampus-accumbens code guides goal-directed appetitive behavior

Oliver Barnstedt, Petra Mocellin, and Stefan Remy

bioRxiv posted 9 March 2023

[Abstract] [PDF]

 

Inferring functional organization of posterior parietal cortex circuitry based on information flow

Jung Uk Kang, Eric Mooshagian, and Lawrence H. Snyder

bioRxiv posted 9 March 2023

[Abstract] [PDF]

 

Sex differences in neural representations of social and nonsocial reward in the medial prefrontal cortex

Jennifer Isaac, Sonia Karkare, Hymavathy Balasubramanian, Nicholas Schappaugh, Jarildy Javier, Maha Rashid, and Malavika Murugan

bioRxiv posted 14 March 2023

[Abstract] [PDF]

 

An adaptive behavioral control motif mediated by cortical axo-axonic inhibition

Kanghoon Jung, Minhyeok Chang, Andre Steinecke, Benjamin Burke, Youngjin Choi, Oisi Yasuhiro, David Fitzpatrick, Hiroki Taniguchi, and Hyung-Bae Kwon

bioRxiv posted 11 March 2023

[Abstract] [PDF]

 

Neural manifolds and gradient-based adaptation in neural-interface tasks

Alexandre Payeur, Amy L Orsborn, and Guillaume Lajoie

bioRxiv posted 12 March 2023

[Abstract] [PDF]

 

Dimensionality reduction reveals separate translation and rotation populations in the zebrafish hindbrain

Claudia E Feierstein, Michelle H M de Goeij, Aaron D Ostrovsky, Alexandre Laborde, Ruben Portugues, Michael B Orger, and Christian K Machen

bioRxiv posted 12 March 2023

[Abstract] [PDF]

 

Organization and Plasticity of Inhibition in Hippocampal Recurrent Circuits

Bert Vancura, Tristan Geiller, and Attila Losonczy

bioRxiv posted 13 March 2023

[Abstract] [PDF]

 

Connectome-constrained deep mechanistic networks predict neural responses across the fly visual system at single-neuron resolution

Janne K Lappalainen, Fabian D Tschopp, Sridhama Prakhya, Mason McGill, Aljoscha Nern, Kazunori Shinomiya, Shin-ya Takemura, Eyal Gruntman, Jakob H Macke, and Srinivas C Turaga

bioRxiv posted 13 March 2023

[Abstract] [PDF]

 

Pattern completion and disruption characterize contextual modulation in mouse visual cortex

Jiakun Fu, Suhas Shrinivasan, Kayla Ponder, Taliah Muhammad, Zhuokun Ding, Eric Wang, Zhiwei Ding, Dat T. Tran, Paul G. Fahey, Stelios Papadopoulos, Saumil Patel, Jacob Reimer, Alexander S. Ecker, Xaq Pitkow, Ralf M. Haefner, Fabian H. Sinz, Katrin Franke, and Andreas S. Tolias

bioRxiv posted 14 March 2023

[Abstract] [PDF]

 

Modeling and dissociation of intrinsic and input-driven neural population dynamics underlying behavior

Parsa Vahidi, Omid G Sani, and Maryam M Shanechi

bioRxiv posted 14 March 2023

[Abstract] [PDF]

 

Aversive experience drives offline ensemble reactivation to link memories across days

Yosif Zaki, Zachary T Pennington, Denisse Morales-Rodriguez, Taylor R Francisco, Alexa R LaBanca, Zhe Dong, Simon Carrillo Segura, Alcino J. Silva, Tristan Shuman, Andre Fenton, Kanaka Rajan, and Denise Jade Cai

bioRxiv posted 14 March 2023

[Abstract] [PDF]

 

Dynamical flexible inference of nonlinear latent structures in neural population activity

Hamidreza Abbaspourazad, Eray Erturk, Bijan Pesaran, and Maryam M Shanechi

bioRxiv posted 14 March 2023

[Abstract] [PDF]

 

Bipartite invariance in mouse primary visual cortex

Zhiwei Ding, Dat T. Tran, Kayla Ponder, Erick Cobos, Zhuokun Ding, Paul G. Fahey, Eric Wang, Taliah Muhammad, Jiakun Fu, Santiago A. Cadena, Stelios Papadopoulos, Saumil Patel, Katrin Franke, Jacob Reimer, Fabian H. Sinz, Alexander S. Ecker, Xaq Pitkow, and Andreas S. Tolias

bioRxiv posted 16 March 2023

[Abstract] [PDF]

 

Drift of neural ensembles driven by slow fluctuations of intrinsic excitability

Geoffroy Delamare, Yosif Zaki, Denise J Cai, and Claudia Clopath

bioRxiv posted 17 March 2023

[Abstract] [PDF]

 

Multifaceted luminance gain control beyond photoreceptors in Drosophila

Madhura D Ketkar, Shuai Shao, Julijana Gjorgjieva, and Marion Silies

bioRxiv posted 18 March 2023

[Abstract] [PDF]

 

Perirhinal Cortex Learns A Predictive Map of The Task Environment

David G Lee, Caroline A McLachlan, Ramon Nogueira, Osung Kwon, Alanna Carey, Garrett House, Gavin D Lagani, Danielle LaMay, Stefano Fusi, and Jerry L Chen

bioRxiv posted 18 March 2023

[Abstract] [PDF]

 

Generalizing biological surround suppression based on center surround similarity via deep neural network models

Xu Pan, Annie DeForge, and Odelia Schwartz

bioRxiv posted 19 March 2023

[Abstract] [PDF]

 

Paying attention to natural scenes in area V1

Andreea Lazar, Liane Klein, Johanna Klon-Lipok, Mihaly Banyai, Gergo Orban, and Wolf Singer

bioRxiv posted 21 March 2023

[Abstract] [PDF]

 

Towards a Foundation Model of the Mouse Visual Cortex

Eric Y Wang, Paul G. Fahey, Kayla Ponder, Zhuokun Ding, Andersen Change, Taliah Muhammad, Saumil Patel, Zhiwei Ding, Dat T. Tran, Jiakun Fu, Stelios Papadopoulos, Katrin Franke, Alexander S. Ecker, Jacob Reimer, Xaq Pitkow, Fabian H. Sinz, and Andreas S. Tolias

bioRxiv posted 24 March 2023

[Abstract] [PDF]

 

Dynamic control of sequential retrieval speed in networks with heterogeneous learning rules

Maxwell Gillett and Nicolas Brunel

bioRxiv posted 24 March 2023

[Abstract] [PDF]

 

A neuronal least-action principle for real-time learning in cortical circuits

Walter Senn, Dominik Dold, Akos Kungl, Benjamin Ellenberger, Jakob Jordan, Yoshua Bengio, Joao Sacramento, and Mihai A Petrovici

bioRxiv posted 25 March 2023

[Abstract] [PDF]

 

Neural timescales reflect behavioral demands in freely moving rhesus macaques

Ana M.G. Manea, Anna Zilverstand, Ben Hayden, and Jan Zimmermann

bioRxiv posted 28 March 2023

[Abstract] [PDF]

 

Learning to learn: Single session acquisition of new rules by freely-moving mice

Amir Levi, Noam Aviv, and Eran Stark

bioRxiv posted 28 March 2023

[Abstract] [PDF]

 

Distinct mesoscale cortical dynamics encode search strategies during spatial navigation

Daniel Surinach, Mathew L Rynes, Kapil Saxena, Eunsong Ko, A. David Redish, A. David Redish, and Suhasa Bangalore Kodandaramaiah

bioRxiv posted 28 March 2023

[Abstract] [PDF]

 

The structure and function of neural connectomes are shaped by a small number of design principles

Adam Haber, Adrian A. Wanner, Rainer W. Friedrich, Elad Schneidman

bioRxiv posted 15 March 2023

[Abstract] [PDF]

 

Neuromuscular Basis of Drosophila Larval Escape Behavior

Patricia C Cooney, Wenze Li, Yuhan Huang, Richard Hormigo, Tanya Tabachnik, Elizabeth M C Hillman, Wesley B Grueber, Aref A Zarin

bioRxiv posted 20 March 2023

[Abstract] [PDF]

 

Keypoint-MoSeq: parsing behavior by linking point tracking to pose dynamics

Caleb Weinreb, Mohammed Abdal Monium Osman, Libby Zhang, Sherry Lin, Jonah Pearl, Sidharth Annapragada, Eli Conlin, Winthrop F Gillis, Maya Jay, Shaokai Ye, Alexander Mathis, Mackenzie Weygandt Mathis, Talmo Pereira, Scott W Linderman, Sandeep Robert Datta

bioRxiv posted 5 April 2023

[Abstract] [PDF]

 

NEURD: automated proofreading and feature extraction for connectomics

Brendan Celii, Stelios Papadopoulos, Zhuokun Ding, Paul G Fahey, Eric Wang, Christos Papadopoulos, Alexander B Kunin, Saumil Patel, J Alexander Bae, Agnes L Bodor, Derrick Brittain, JoAnn Buchanan, Daniel J Bumbarger, Manuel A Castro, Erick Cobos, Sven Dorkenwald, Leila Elabbady, Akhilesh Halageri, Zhen Jia, Chris Jordan, Dan Kapner, Nico Kemnitz, Sam Kinn, Kisuk Lee, Kai Li, Ran Lu, Thomas Macrina, Gayathri Mahalingam, Eric Mitchell, Shanka Subhra Mondal, Shang Mu, Barak Nehoran, Sergiy Popovych, Casey M Schneider-Mizell, William Silversmith, Marc Takeno, Russel Torres, Nicholas L Turner, William Wong, Jingpeng Wu, Szi-Chieh Yu, Wenjing Yin, Daniel Xenes, Lindsey M Kitchell, Patricia K Rivlin, Victoria A Rose, Caitlyn A Bishop, Brock Wester, Emmanouil Froudarakis, Edgar Y Walker, Fabian Sinz, H Sebastian Seung, Forrest Collman, Nuno Maçarico da Costa, R Clay Reid, Xaq Pitkow, Andreas S Tolias, Jacob Reimer

bioRxiv posted 29 March 2023

[Abstract] [PDF]
 

Functional connectomics reveals general wiring rule in mouse visual cortex

Ding Z, Fahey PG, Papadopoulos S, Wang E, Celii B, Papadopoulos C, Kunin AB, Chang A, Fu J, Ding Z, Patel S, Ponder K, Bae JA, Bodor AL, Brittain D, Buchanan J, Bumbarger DJ, Castro MA, Cobos E, Dorkenwald S, Elabbady L, Halageri A, Jia Z, Jordan C, Kapner D, Kemnitz N, Kinn S, Lee K, Li K, Lu R, Macrina T, Mahalingam G, Mitchell E, Mondal SS, Mu S, Nehoran B, Popovych S, Schneider-Mizell CM, Silversmith W, Takeno M, Torres R, Turner NL, Wong W, Wu J, Yin W, Yu SC, Froudarakis E, Sinz F, Seung HS, Collman F, da Costa NM, Reid RC, Walker EY, Pitkow X, Reimer J, Tolias AS.

bioRxiv posted 30 March 2023

[Abstract] [PDF]

 

Dual credit assignment processes underlie dopamine signals in a complex spatial environment

Timothy A Krausz, Alison E Comrie, Loren M Frank, Nathaniel D Daw, Joshua D Berke

bioRxiv posted 19 March 2023

[Abstract] [PDF]

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