2005 Publications

Chemical reactivity under collective vibrational strong coupling

Derek S. Wang, J. Flick, Susanne F. Yelin
Recent experiments of chemical reactions in optical cavities have shown great promise to alter and steer chemical reactions but still remain poorly understood theoretically. In particular the origin of resonant effects between the cavity and certain vibrational modes in the collective limit is still subject to active research. In this paper, we study unimolecular dissociation reactions of many molecules collectively interacting with an infrared cavity mode through their vibrational dipole moment. We find that the reaction rate can slow down by increasing the number of aligned molecules if the cavity mode is resonant with a vibrational frequency of the molecules. We also discover a simple scaling relation that scales with the collective Rabi splitting to estimate the onset of reaction rate modification by collective vibrational strong coupling and numerically demonstrate these effects for up to 10,000 molecules.
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Quantum physics in connected worlds

J. Tindall, Amy Searle, Abdulla Alhajri, Dieter Jaksch
Theoretical research into many-body quantum systems has mostly focused on regular structures which have a small, simple unit cell and where a vanishingly small number of pairs of the constituents directly interact. Motivated by advances in control over the pairwise interactions in many-body simulators, we determine the fate of spin systems on more general, arbitrary graphs. Placing the minimum possible constraints on the underlying graph, we prove how, with certainty in the thermodynamic limit, such systems behave like a single collective spin. We thus understand the emergence of complex many-body physics as dependent on `exceptional', geometrically constrained structures such as the low-dimensional, regular ones found in nature. Within the space of dense graphs we identify hitherto unknown exceptions via their inhomogeneity and observe how complexity is heralded in these systems by entanglement and highly non-uniform correlation functions. Our work paves the way for the discovery and exploitation of a whole class of geometries which can host uniquely complex phases of matter.
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Approximating the Gaussian as a Sum of Exponentials and Its Applications to the Fast Gauss Transform

We develop efficient and accurate sum-of-exponential (SOE) approximations for the Gaussian using rational approximation of the exponential function on the negative real axis. Six digit accuracy can be obtained with eight terms and ten digit accuracy can be obtained with twelve terms. This representation is of potential interest in approximation theory but we focus here on its use in accelerating the fast Gauss transform (FGT) in one and two dimensions. The one-dimensional scheme is particularly straightforward and easy to implement, requiring only twenty-four lines of MATLAB code. The two-dimensional version requires some care with data structures, but is significantly more efficient than existing FGTs. Following a detailed presentation of the theoretical foundations, we demonstrate the performance of the fast transforms with several numerical experiments.

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Taming pseudofermion functional renormalization for quantum spins: Finite temperatures and the Popov-Fedotov trick

Benedikt Schneider, D. Kiese, Björn Sbierski
The pseudo-fermion representation for S=1/2 quantum spins introduces unphysical states in the Hilbert space which can be projected out using the Popov-Fedotov trick. However, state-of-the-art implementation of the functional renormalization group method for pseudo-fermions have so far omitted the Popov-Fedotov projection. Instead, restrictions to zero temperature were made and absence of unphysical contributions to the ground-state was assumed. We question this belief by exact diagonalization of several small-system counterexamples where unphysical states do contribute to the ground state. We then introduce Popov-Fedotov projection to pseudo-fermion functional renormalization, enabling finite temperature computations with only minor technical modifications to the method. At large and intermediate temperatures, our results are perturbatively controlled and we confirm their accuracy in benchmark calculations. At lower temperatures, the accuracy degrades due to truncation errors in the hierarchy of flow equations. Interestingly, these problems cannot be alleviated by switching to the parquet approximation. We introduce the spin projection as a method-intrinsic quality check. We also show that finite temperature magnetic ordering transitions can be studied via finite-size scaling.
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Designer meron lattice on the surface of a topological insulator

D. Guerci, J. Wang, J. H. Pixley, J. Cano
We present a promising route to realize spontaneous magnetic order on the surface of a 3D topological insulator by applying a superlattice potential. The superlattice potential creates tunable van Hove singularities, which, when combined with strong spin-orbit coupling and Coulomb repulsion give rise to a topological meron lattice spin texture. The periodicity of this designer meron lattice can be tuned by varying the periodicity of the superlattice potential. We characterize the magnetic order using Ginzburg-Landau theory and show that the magnetic transition temperature reaches experimentally accessible values. Our work introduces a new direction to realize exotic quantum order by engineering interacting Dirac electrons in a superlattice potential, with promising applications to spintronics.
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Dynamic Response of an Electron Gas: Towards the Exact Exchange-Correlation Kernel

James P. F. LeBlanc, K. Chen, K. Haule, Nikolay V. Prokof'ev, Igor S. Tupitsyn
Precise calculations of dynamics in the homogeneous electron gas (jellium model) are of fundamental importance for design and characterization of new materials. We introduce a diagrammatic Monte Carlo technique based on algorithmic Matsubara integration that allows us to compute frequency and momentum resolved finite temperature response directly in the real frequency domain using a series of connected Feynman diagrams. The data for charge response at moderate electron density are used to extract the frequency dependence of the exchange-correlation kernel at finite momenta and temperature. These results are as important for development of the time-dependent density functional theory for materials dynamics as ground state energies are for the density functional theory.
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December 1, 2022

Maximum a posteriori natural scenes reconstruction from retinal ganglion cells with deep denoiser priors

Eric G. Wu, Nora Brackbill, Alexander Sher & Alan M. Litke, E. P. Simoncelli, E.J. Chichilnisky

Visual information arriving at the retina is transmitted to the brain by signals in the optic nerve, and the brain must rely solely on these signals to make inferences about the visual world. Previous work has probed the content of these signals by directly reconstructing images from retinal activity using linear regression or nonlinear regression with neural networks. Maximum a posteriori (MAP) reconstruction using retinal encoding models and separately-trained natural image priors offers a more general and principled approach. We develop a novel method for approximate MAP reconstruction that combines a generalized linear model for retinal responses to light, including their dependence on spike history and spikes of neighboring cells, with the image prior implicitly embedded in a deep convolutional neural network trained for image denoising. We use this method to reconstruct natural images from ex vivo simultaneously-recorded spikes of hundreds of retinal ganglion cells uniformly sampling a region of the retina. The method produces reconstructions that match or exceed the state-of-the-art in perceptual similarity and exhibit additional fine detail, while using substantially fewer model parameters than previous approaches. The use of more rudimentary encoding models (a linear-nonlinear-Poisson cascade) or image priors (a 1/f spectral model) significantly reduces reconstruction performance, indicating the essential role of both components in achieving high-quality reconstructed images from the retinal signal.

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Fine-tuning hierarchical circuits through learned stochastic co-modulation

Caroline Haimerl, E. P. Simoncelli, Cristina Savin

Attentional gating is a core mechanism supporting behavioral flexibility, but its biological implementation remains uncertain. Gain modulation of neural responses is likely to play a key role, but simply boosting relevant neural responses can be insufficient for improving behavioral outputs, especially in hierarchical circuits. Here we propose a variation of attentional gating that relies on stochastic gain modulation as a dedicated indicator of task relevance. We show that targeted stochastic modulation can be effectively learned and used to fine-tune hierarchical architectures, without reorganization of the underlying circuits. Simulations of such networks demonstrate improvements in learning efficiency and performance in novel tasks, relative to traditional attentional mechanisms based on deterministic gain increases. The effectiveness of this approach relies on the availability of representational bottlenecks in which the task relevant information is localized in small subpopulations of neurons. Overall, this work provides a new mechanism for constructing intelligent systems that can flexibly and robustly adapt to changes in task structure.

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Replacement dynamics and the pathogenesis of the Alpha, Delta and Omicron variants of SARS-CoV-2

Thomas Ward, Alex Glaser, Christopher E Overton, B. Carpenter, Nick Gent, Anna C Seale

New SARS-CoV-2 variants causing COVID-19 are a major risk to public health worldwide due to the potential for phenotypic change and increases in pathogenicity, transmissibility and/or vaccine escape. Recognising signatures of new variants in terms of replacing growth and severity are key to informing the public health response. To assess this, we aimed to investigate key time periods in the course of infection, hospitalisation and death, by variant. We linked datasets on contact tracing (Contact Tracing Advisory Service), testing (the Second-Generation Surveillance System) and hospitalisation (the Admitted Patient Care dataset) for the entire length of contact tracing in the England - from March 2020 to March 2022. We modelled, for England, time delay distributions using a Bayesian doubly interval censored modelling approach for the SARS-CoV-2 variants Alpha, Delta, Delta Plus (AY.4.2), Omicron BA.1 and Omicron BA.2. This was conducted for the incubation period, the time from infection to hospitalisation and hospitalisation to death. We further modelled the growth of novel variant replacement using a generalised additive model with a negative binomial error structure and the relationship between incubation period length and the risk of a fatality using a Bernoulli generalised linear model with a logit link. The mean incubation periods for each variant were: Alpha 4.19 (95% credible interval (CrI) 4.13-4.26) days; Delta 3.87 (95% CrI 3.82-3.93) days; Delta Plus 3.92 (95% CrI 3.87-3.98) days; Omicron BA.1 3.67 (95% CrI 3.61-3.72) days and Omicron BA.2 3.48 (95% CrI 3.43-3.53) days. The mean time from infection to hospitalisation was for Alpha 11.31 (95% CrI 11.20-11.41) days, Delta 10.36 (95% CrI 10.26-10.45) days and Omicron BA.1 11.54 (95% CrI 11.38-11.70) days. The mean time from hospitalisation to death was, for Alpha 14.31 (95% CrI 14.00-14.62) days; Delta 12.81 (95% CrI 12.62-13.00) days and Omicron BA.2 16.02 (95% CrI 15.46-16.60) days. The 95th percentile of the incubation periods were: Alpha 11.19 (95% CrI 10.92-11.48) days; Delta 9.97 (95% CrI 9.73-10.21) days; Delta Plus 9.99 (95% CrI 9.78-10.24) days; Omicron BA.1 9.45 (95% CrI 9.23-9.67) days and Omicron BA.2 8.83 (95% CrI 8.62-9.05) days. Shorter incubation periods were associated with greater fatality risk when adjusted for age, sex, variant, vaccination status, vaccination manufacturer and time since last dose with an odds ratio of 0.83 (95% confidence interval 0.82-0.83) (P value < 0.05). Variants of SARS-CoV-2 that have replaced previously dominant variants have had shorter incubation periods. Conversely co-existing variants have had very similar and non-distinct incubation period distributions. Shorter incubation periods reflect generation time advantage, with a reduction in the time to the peak infectious period, and may be a significant factor in novel variant replacing growth. Shorter times for admission to hospital and death were associated with variant severity - the most severe variant, Delta, led to significantly earlier hospitalisation, and death. These measures are likely important for future risk assessment of new variants, and their potential impact on population health.

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