Simons Foundation

Publications

Experiences and lessons learned from two virtual, hands-on microbiome bioinformatics workshops

Matthew R Dillon, Evan Bolyen, Anja Adamov, J. Morton, R. Bonneau, et al.

Temporal integration of inductive cues on the way to gastrulation

Sarah McFann, Sayantan Dutta, Jared E. Toettcher, S. Shvartsman

Anchor extension: a structure-guided approach to design cyclic peptides targeting enzyme active sites

Parisa Hosseinzadeh, Paris R. Watson, Timothy W. Craven, V. Mulligan, et al.

A fast Chebyshev method for the Bingham closure with application to active nematic suspensions

Scott Weady, D. Stein, M. Shelley

How crosslink numbers shape the large-scale physics of cytoskeletal materials

S. Fürthauer, M. Shelley

Single-cell gene regulatory network inference at scale: The Inferelator 3.0

C. Skok Gibbs, C. Jackson, G. Saldi, A. Watters, N. Carriero, R. Bonneau, et al.

A stable and accurate scheme for solving the Stefan problem coupled with natural convection using the Immersed Boundary Smooth Extension method

J. Huang, M. Shelley, D. Stein

SynNotch-CAR T cells overcome challenges of specificity, heterogeneity, and persistence in treating glioblastoma

J. Choe, P. Watchmaker, M. Simic , O. Troyanskaya, et al.

MHCEpitopeEnergy, a Flexible Rosetta-Based Biotherapeutic Deimmunization Platform

B. Yachnin, V. Mulligan, S. Khare, C. Bailey-Kellogg

Tissue-specific enhancer functional networks for associating distal regulatory regions to disease

X. Chen, J. Zhou, R. Zhang, A. Wong, C. Park, C. Theesfeld, O. Troyanskaya

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