CCB: Publications

A stable and accurate scheme for solving the Stefan problem coupled with natural convection using the Immersed Boundary Smooth Extension method

J. Huang, M. Shelley, D. Stein

SynNotch-CAR T cells overcome challenges of specificity, heterogeneity, and persistence in treating glioblastoma

J. Choe, P. Watchmaker, M. Simic , ..., O. Troyanskaya, et al.

MHCEpitopeEnergy, a Flexible Rosetta-Based Biotherapeutic Deimmunization Platform

B. Yachnin, V. Mulligan, S. Khare, C. Bailey-Kellogg

Tissue-specific enhancer functional networks for associating distal regulatory regions to disease

X. Chen, J. Zhou, R. Zhang, A. Wong, C. Park, C. Theesfeld, O. Troyanskaya

Modeling transcriptional regulation of model species with deep learning

E. Cofer, J. Raimundo, A. Tadych, Y. Yamazaki, A. Wong, C. Theesfeld, M. Levine, O. Troyanskaya

Molecular mechanisms underlying cellular effects of human MEK1 mutations

R. Marmion, L. Yang, Y. Goyal, G. Jindal, J. Wetzel, M. Singh, T. Schüpbach, S. Shvartsman

ChIP-BIT2: a software tool to detect weak binding events using a Bayesian integration approach

X. Chen, A. Neuwald, L. Hilakivi-Clarke, R. Clarke, J. Xuan

Ensuring scientific reproducibility in bio-macromolecular modeling via extensive, automated benchmarks

J. Koehler, S. Lyskov, S. Lewis, J. Adolf-Bryfogle, R. Alford, K. Barlow, Z. Ben-Aharon, D. Farrell , J. Fell, W. Hansen, A. Harmalkar, J. Jeliazkov, G. Kuenze, J. Krys, A. Ljubetič, A. Loshbaugh, J. Maguire, R. Moretti, V. Mulligan, R. Bonneau, et al

Constrained non-negative matrix factorization enabling real-time insights of in situ and high-throughput experiments

M. Maffettone, A. Daly, D. Olds

Comparison of explicit and mean-field models of cytoskeletal filaments with crosslinking motors

A. Lamson, J. Moore, F. Fang, M. Glaser, M. Shelley, M. Betterton