CCB: Publications – Simons Foundation

Computing collision stress in assemblies of active spherocylinders: applications of a fast and generic geometric method

An integrative tissue-network approach to identify and test human disease genes.

V. Yao, R. Kaletsky, W. Keyes, D. Mor, A. Wong, S. Sohrabi, C. Murphy, O. Troyanskaya

Morphogenetic degeneracies in the actomyosin cortex

Sundar Ram Naganathan, S. Fürthauer, Josana Rodriguez, Bruno Thomas Fievet, Frank Jülicher, Julie Ahringer, Carlo Vittorio Cannistraci, Stephan W Grill

Biologically Plausible Online Principal Component Analysis Without Recurrent Neural Dynamics

V. Minden, C. Pehlevan, D. Chklovskii

Enabling Precision Medicine through Integrative Network Models.

V. Yao, A. Wong, O. Troyanskaya

Single-cell analysis of progenitor cell dynamics and lineage specification in the human fetal kidney.

R. Menon, E. Otto, A. Kokoruda, J. Zhou, Z. Zhang, E. Yoon, Y. Chen, O. Troyanskaya, J. Spence, M. Kretzler, C. Cebrián

Universal image systems for non-periodic and periodic Stokes flows above a no-slip wall

W. Yan, M. Shelley

Transcriptome analysis of adult Caenorhabditis elegans cells reveals tissue-specific gene and isoform expression.

R. Kaletsky, V. Yao, A. Williams, A. Runnels, A. Tadych, S. Zhou, O. Troyanskaya, C. Murphy

Deep learning sequence-based ab initio prediction of variant effects on expression and disease risk

J. Zhou, Chandra L. Theesfeld, K. Yao, K. Chen, A. Wong, O. Troyanskaya

GIANT 2.0: genome-scale integrated analysis of gene networks in tissues

A. Wong, Arjun Krishnan, O. Troyanskaya