From the bioRxiv: A Selection of Recently Posted Papers from SCGB Investigators and Others
A state eepresentation for reinforcement learning and decision-making in the orbitofrontal cortex
Nicolas W. Schuck, Robert C. Wilson, and Yael Niv
bioRxiv posted 29 October 2017
Majority of choice-related variability in perceptual decisions is present in early sensory cortex
Charles Michelson, Jonathan Pillow, and Eyal Seidemann
bioRxiv posted 22 October 2017
Specific hippocampal representations are linked to generalized cortical representations in memory.
Jai Y. Yu, Daniel F. Liu, Adrianna Loback, Irene Grossrubatscher, and Loren M. Frank
bioRxiv posted 21 October 2017
Context-invariant encoding of reward location in a distinct hippocampal population
Jeffrey L. Gauthier and David W. Tank
bioRxiv posted 20 October 2017
Learning-induced sequence reactivation during sharp-wave ripples: a computational study
Paola Malerba, Katya Tsimring, and Maxim Bazhenov
bioRxiv posted 23 October 2017
Simulation of visual perception and learning with a retinal prosthesis
James R. Golden, Cordelia Erickson-Davis, Nicolas P. Cottaris, Nikhil Parthasarathy, Fred Rieke, David H. Brainard, Brian A. Wandell, and E. J. Chichilnisky
bioRxiv posted 20 October 2017
Use of a Neural Circuit Probe to Validate in silico Predictions of Inhibitory Connections
Honglei Liu, Daniel Bridges, Connor Randall, Sara A. Solla, Bian Wu, Paul Hansma, Xifeng Yan, Kenneth S. Kosik, and Kristofer Bouchard
bioRxiv posted 19 October 2017
The representation of colored objects in macaque color patches
Le Chang, Pinglei Bao, and Doris Tsao
bioRxiv posted 19 October 2017
Speed tuning in the macaque posterior parietal cortex
Eric Avila, Kaushik J Lakshminarasimhan, Gregory C DeAngelis, and Dora E Angelaki
bioRxiv posted 18 October 2017
Estimation of neuronal firing rate using Bayesian Adaptive Kernel Smoother (BAKS)
Nur Ahmadi, Timothy G. Constandinou, and Christos-Savvas Bouganis
bioRxiv posted 17 October 2017
Rats optimally accumulate and discount evidence in a dynamic environment
Alex Piet, Ahmed El Hady, and Carlos D. Brody
bioRxiv posted 17 October 2017
Propagation of spike timing and firing rate in feedforward networks reconstituted in vitro
Jeremie Barral, Xiao-Jing Wang, and Alex D Reyes
bioRxiv posted 16 October 2017
Discrete attractor dynamics underlying selective persistent activity in frontal cortex
Hidehiko Inagaki, Lorenzo Fontolan, Sandro Romani, and Karel Svoboda
bioRxiv posted 15 October 2017
Decisions are expedited through multiple neural adjustments spanning the sensorimotor hierarchy
Natalie A Steinemann, Redmond G O’Connell, and Simon P Kelly
bioRxiv posted 14 October 2017
Unsupervised detection of cell-assembly sequences with edit similarity score
Keita Watanabe, Tatsuya Haga, David R. Euston, Masami Tatsuno, and Tomoki Fukai
bioRxiv posted 13 October 2017
Experience-dependent modulation of behavioral features in sensory navigation of nematodes and bats revealed by machine learning
Shuhei J. Yamazaki, Yosuke Ikejiri, Fumie Hiramatsu, Kosuke Fujita, Yuki Tanimoto, Akiko Yamazoe-Umemoto, Yasufumi Yamada, Koichi Hashimoto, Shizuko Hiryu, Takuya Maekawa, and Koutarou D. Kimura
bioRxiv posted 12 October 2017
Imbalanced amplification: A mechanism of amplification and suppression from local imbalance of excitation and inhibition in cortical circuits
Christopher Ebsch and Robert Rosenbaum
bioRxiv posted 11 October 2017
Long-range inputs and H-current regulate different modes of operation in a multiscale model of mouse M1 microcircuits
Salvador Dura-Bernal, Samuel A Neymotin, Benjamin A Suter, Gordon MG Shepherd, and William W Lytton
bioRxiv posted 11 October 2017
Neural code uses self-information principle to organize the brain’s universal cell-assembly coding
Meng Li, Kun Xie, Hui Kuang, Jun Liu, Deheng Wang, Grace E Fox, Zhifeng Shi, Liang Chen, Fang Zhao, Ying Mao, and Joe Tsien
bioRxiv posted 11 October 2017
Deep convolutional models improve predictions of macaque V1 responses to natural images
Santiago A Cadena, George H Denfield, Edgar Y Walker, Leon A Gatys, Andreas S Tolias, Matthias Bethge, and Alexander S Ecker
bioRxiv posted 11 October 2017
Population-scale organization of cerebellar granule neuron signaling during a visuomotor behavior
Sherika J.G. Sylvester, Melanie M. Lee, Alexandro Ramirez, Sukbin Lim, Mark S. Goldman, and Emre R.F. Aksay
bioRxiv posted 10 October 2017
Attractor dynamics in networks with learning rules inferred from in vivo data
Ulises Pereira and Nicolas Brunel
bioRxiv posted 6 October 2017
Encoding of Tactile Context in the Mouse Visual Cortex
Steffen Kandler, Dun Mao, Bruce L. McNaughton, and Vincent Bonin
bioRxiv posted 6 October 2017
Exploiting modal demultiplexing properties of tapered optical fibers for tailored optogenetic stimulation
Marco Pisanello, Filippo Pisano, Leonardo Sileo, Emanuela Maglie, Elisa Bellistri, Barbara Spagnolo, Gil Mandelbaum, Bernardo L. Sabatini, Massimo De Vittorio, and Ferruccio Pisanello
bioRxiv posted 6 October 2017
Expectation-induced modulation of metastable activity underlies faster coding of sensory stimuli
Luca Mazzucato, Giancarlo La Camera, and Alfredo Fontanini
bioRxiv posted 6 October 2017
Grid cell co-activity patterns during sleep reflect spatial overlap of grid fields during active behaviors
Sean G. Trettel, John B. Trimper, Ernie Hwaun, Ila R. Fiete, and Laura L. Colgin
bioRxiv posted 5 October 2017
Correlation structure of grid cells is preserved during sleep
Richard J. Gardner, Li Lu, Tanja Wernle, May-Britt Moser, and Edvard I. Moser
bioRxiv posted 5 October 2017
A subcortical circuit linking the cerebellum to the basal ganglia engaged in vocal learning
Ludivine Pidoux, Pascale Leblanc, and Arthur Leblois
bioRxiv posted 4 October 2017
Predictive Coding of Novel versus Familiar Stimuli in the Primary Visual Cortex
Jan Homann, Sue Ann Koay, Alistair M. Glidden, David W. Tank, and Michael J. Berry
bioRxiv posted 3 October 2017
Single-exposure visual memory judgments are reflected in IT cortex
Travis Meyer and Nicole C Rust
bioRxiv posted 3 October 2017
OnACID: Online Analysis of Calcium Imaging Data in Real Time
Andrea Giovannucci, Johannes Friedrich, Matthew Kaufman, Anne K. Churchland, Dmitri Chklovskii, Liam Paninski, and Eftychios A. Pnevmatikakis
bioRxiv posted 2 October 2017
Neural data science: accelerating the experiment-analysis-theory cycle in large-scale neuroscience
Liam Paninski and John Cunningham
bioRxiv posted 2 October 2017
Assessing Selectivity in the Basal Ganglia: The “Gearbox” Hypothesis
Zafeirios Fountas and Murray Shanahan
bioRxiv posted 2 October 2017
Multiphoton minimal inertia scanning for fast acquisition of neural activity signals
Renaud Schuck, Mary Ann Go, Stefania Garasto, Stephanie Reynolds, Pier Luigi Dragotti, and Simon Schultz
bioRxiv posted 30 September 2017
Comparing average network signals and neural mass signals in systems with low-synchrony
Prejaas Tewarie, Andreas Daffertshofer, and Bob W van Dijk
bioRxiv posted 30 September 2017
Modeling the Role of Striatum in Stochastic Multi Context Tasks
Sabyasachi Shivkumar, V. Srinivasa Chakravarthy, and Nicolas P. Rougier
bioRxiv posted 30 September 2017
Visual evidence accumulation behavior in unrestrained mice
Onyekachi Odoemene, Hien Nguyen, and Anne K. Churchland
bioRxiv posted 29 September 2017
Simultaneous representation of a spectrum of dynamically changing value estimates during decision making
David Meder, Nils Kolling, Lennart Verhagen, Marco Wittmann, Jacqueline Scholl, Kristoffer Hougaard Madsen, Oliver Hulme, Timothy Behrens, and Matthew Rushworth
bioRxiv posted 29 September 2017
Gradual progression from sensory to task-related processing in cerebral cortex
Scott L. Brincat, Markus Siegel, Constantin von Nicolai, and Earl K. Miller
bioRxiv posted 28 September 2017
Sub-threshold resonance organizes activity and optimizes learning in neural networks.
James P. Roach, Aleksandra Pidde, Eitan Katz, Jiaxing Wu, Nicolette Ognjanovski, Sara J. Aton, and Michal R. Zochowski
bioRxiv posted 27 September 2017
