From the bioRxiv: A Selection of Recently Posted Papers from SCGB Investigators and Others

Each month, SCGB scans the bioRxiv and arXiv for interesting papers from the SCGB community and beyond.

The basal ganglia achieve a higher signal-to-noise ratio than the cerebellum by sharpening reward and movement signals

Noga Larry, Gil Zur, and Mati Joshua

bioRxiv posted 3 October 2022 doi:10.1101/2022.10.01.510246

[Abstract] [PDF]


Highly synchronized cortical circuit dynamics mediate spontaneous pain

Weihua Ding, Lukas Fischer, Qian Chen, Ziyi Li, Liuyue Yang, Zerong You, Kun Hu, Xinbo Wu, Xue Zhou, Wei Chao, Peter Hu, Tewodros Mulugeta Dagnew, Daniel DuBreuil, Shiyu Wang, Suyun Xia, Caroline Bao, Shengmei Zhu, Lucy Chen, Changning Wang, Brian M Wainger, Peng Jin, Jianren Mao, Guoping Feng, Mark Harnett, and Shiqian Shen

bioRxiv posted 4 October 2022 doi:10.1101/2022.10.04.510722

[Abstract] [PDF]


A neural model of proximity to reward

Paul Botros, Nuria Vendrell-Llopis, Rui Costa, and Jose Carmena

bioRxiv posted 6 October 2022 doi:10.1101/2022.10.03.510669

[Abstract] [PDF]


A ternary neural code resolves error and sharpening signals

Richard Naud, Xingyun Wang, Zachary Friedenberger, Jiyun N Shin, Jean-Claude Beique, Matthew Larkum, and Guy Doron

bioRxiv posted 7 October 2022 doi:10.1101/2022.10.07.511138

[Abstract] [PDF]


Neural representational geometry correlates with behavioral differences between monkeys

Valeria Fascianelli, Fabio Stefanini, Satoshi Tsujimoto, Aldo Genovesio, and Stefano Fusi

bioRxiv posted 7 October 2022 doi:10.1101/2022.10.05.511024

[Abstract] [PDF]


Disk-Drive-Like Operations in the Hippocampus

Wilten Nicola, David Dupret, and Claudia Clopath

bioRxiv posted 7 October 2022 doi:10.1101/2022.10.05.511000

[Abstract] [PDF]


Activity of tonically active neurons in the primate striatum reflects interaction between time processing and reward prediction

Anne-Caroline Martel and Paul Apicella

bioRxiv posted 7 October 2022 doi:10.1101/2022.10.07.511354

[Abstract] [PDF]


Feedback-based motor control can guide plasticity and drive rapid learning

Barbara Feulner, Matthew G Perich, Lee E Miller, Claudia Clopath, and Juan Alvaro Gallego

bioRxiv posted 8 October 2022 doi:10.1101/2022.10.06.511108

[Abstract] [PDF]


Large-scale electrophysiology and deep learning reveal distorted neural signal dynamics after hearing loss

Shievanie Sabesan, Andreas Fragner, and Nicholas A Lesica

bioRxiv posted 7 October 2022 doi:10.1101/2022.10.04.510811

[Abstract] [PDF]


Multifunctional fibers enable modulation of cortical and deep brain activity during cognitive behavior in macaques

Indie C Garwood, Alex J Major, Marc-Joseph Antonini, Josefina Correa, Youngbin Lee, Atharva Sahasrabudhe, Meredith K Mahnke, Earl K Miller, Emery N Brown, and Polina Anikeeva

bioRxiv posted 10 October 2022 doi:10.1101/2022.10.09.511302

[Abstract] [PDF]


Neural dynamics and geometry for transitive inference
Kenneth Kay, Xue-Xin Wei, Ramin Khajeh, Manuel Beiran, Christopher J Cueva, Greg Jensen, Vincent P Ferrera, and L F Abbott

bioRxiv posted 11 October 2022 doi:10.1101/2022.10.10.511448

[Abstract] [PDF]


What does a deep neural network confidently perceive? The effective dimension of high certainty class manifolds and their low confidence boundaries

Stanislav Fort, Ekin Dogus Cubuk, Surya Ganguli, Samuel S. Schoenholz

arXiv posted 11 Oct 2022



Physics-based Deep Learning for Imaging Neuronal Activity via Two-photon and Light Field Microscopy

Herman Verinaz-Jadan, Carmel L Howe, Pingfan Song, Flavie Lesept, Josef Kittler, Amanda J Foust, and Pier Luigi Dragotti

bioRxiv posted 13 October 2022 doi:10.1101/2022.10.11.511633

[Abstract] [PDF]


Spatial memory consolidation during REM sleep requires stabilization of newly formed place cells.

Richard Boyce, Hyun Choong Yong, James Eric Carmichael, Mark Brandon, and Sylvain Williams

bioRxiv posted 13 October 2022 doi:10.1101/2022.10.10.511566

[Abstract] [PDF]


Widespread coding of navigational variables in prefrontal cortex

David Maisson, Benjamin Voloh, Roberto Lopez Cervera, Indirah Conover, Mrunal Zambre, Jan Zimmermann, and Benjamin Yost Hayden

bioRxiv posted 17 October 2022 doi:10.1101/2022.10.13.512139

[Abstract] [PDF]


NeuroWRAP: integrating, validating, and sharing neurodata analysis workflows

Zac Bowen, Gudjon Magnusson, Madeline Diep, Ujjwal Ayyangar, Aleksandr Smirnov, and Wolfgang Losert

bioRxiv posted 17 October 2022 doi:10.1101/2022.10.13.511794

[Abstract] [PDF]


Elucidating a locus coeruleus-hippocampal dopamine pathway for operant reinforcement

Elijah A Petter, Isabella P Fallon, Ryan N Hughes, Glenn Watson, Warren Meck, Francesco Paolo Ulloa Severino, and Henry H Yin

bioRxiv posted 17 October 2022 doi:10.1101/2022.10.13.512041

[Abstract] [PDF]


Neurofeedback training can modulate task-relevant memory replay in rats

Anna K Gillespie, Daniela A Astudillo Maya, Eric L. Denovellis, Sachi Desse and Loren M Frank

bioRxiv. posted 17 October 2022, 10.1101/2022.10.13.512183



Internal noise promotes heterogeneous synaptic dynamics important for working memory in recurrent neural networks

Nuttida Rungratsameetaweemana, Robert Kim, and Terrence Sejnowski

bioRxiv posted 18 October 2022 doi:10.1101/2022.10.14.512301

[Abstract] [PDF]


Differential Stability of Task Variable Representations in Retrosplenial Cortex

Luis M Franco and Michael J Goard

bioRxiv posted 21 October 2022 doi:10.1101/2022.10.19.512933

[Abstract] [PDF]


Ripple-locked coactivity of stimulus-specific neurons supports human associative memory

Lukas Kunz, Bernhard P Staresina, Peter C Reinacher, Armin Brandt, Tim A Guth, Andreas Schulze-Bonhage, and Joshua Jacobs

bioRxiv posted 21 October 2022 doi:10.1101/2022.10.17.512635

[Abstract] [PDF]


Training stochastic stabilized supralinear networks by dynamics-neutral growth

Wayne Wah Ming Soo and Mate Lengyel

bioRxiv posted 21 October 2022 doi:10.1101/2022.10.19.512820

[Abstract] [PDF]


Bayesian multilevel hidden Markov models identify stable state dynamics in longitudinal recordings from macaque primary motor cortex

Sebastien Kirchherr, Sebastian Mildiner Moraga, Gino Coude, Marco Bimbi, Pier F Ferrari, Emmeke Aarts, and James J Bonaiuto

bioRxiv posted 21 October 2022 doi:10.1101/2022.10.17.512024

[Abstract] [PDF]


An evolutionary conserved division-of-labor between hippocampal and neocortical sharp-wave ripples organizes information transfer during sleep

Frank Jasper van Schalkwijk, Jan Weber, Michael Andreas Hahn, Janna D Lendner, Marion Inostroza, Jack J Lin, and Randolph F Helfrich

bioRxiv posted 21 October 2022 doi:10.1101/2022.10.19.512822

[Abstract] [PDF]


Nature over Nurture: Functional neuronal circuits emerge in the absence of developmental activity

Dániel L. Barabási, Gregor F.P. Schuhknecht, and Florian Engert

bioRxiv posted 24 October 2022 doi:10.1101/2022.10.24.513526

[Abstract] [PDF]


Time or distance: predictive coding of Hippocampal cells

Shai Abramson, Benjamin J Kraus, John A White, Michael E Hasselmo, Genela Morris, and Dori Derdikman

bioRxiv posted 24 October 2022 doi:10.1101/2022.10.23.513401

[Abstract] [PDF]


Reward modulates visual responses in the superficial superior colliculus of mice

Liad J Baruchin, Matteo Alleman, and Sylvia Schröder

bioRxiv posted 25 October 2022 doi:10.1101/2022.10.24.513513

[Abstract] [PDF]


A Robust, Compact and Diverse Population Code for Competing Sounds in Auditory Cortex

Jian Carlo Nocon, Jake Witter, Conor J Houghton, Howard J Gritton, Xue Han, and Kamal Sen

bioRxiv posted 25 October 2022 doi:10.1101/2022.10.24.513560

[Abstract] [PDF]


Neural dynamics underlying self-control in the primate subthalamic nucleus

Benjamin Pasquereau and Robert S Turner

bioRxiv posted 25 October 2022 doi:10.1101/2022.10.24.513512

[Abstract] [PDF]


A Model For Hierarchical Memory Storage in Piriform Cortex

Achint Kumar

bioRxiv posted 27 October 2022 doi:10.1101/2022.10.27.514001

[Abstract] [PDF]


Prefrontal control of actions in freely moving macaques

Benjamin Voloh, David J Maisson, Roberto Lopez Cervera, Indirah Conover, Mrunal Zambre, Benjamin Yost Hayden, and Jan Zimmermann

bioRxiv posted 28 October 2022 doi:10.1101/2022.10.26.513892

[Abstract] [PDF]


Routing States Transition During Oscillatory Bursts and Attention States

Kianoush Banaie Boroujeni and Thilo Womelsdorf
bioRxiv posted 30 October 2022 doi:10.1101/2022.10.29.514374

[Abstract] [PDF]


Unified control of temporal and spatial scales of sensorimotor behavior through neuromodulation of short-term synaptic plasticity

Shanglin Zhou and Dean V. Buonomano

bioRxiv posted 30 October 2022 doi:10.1101/2022.10.28.514318

[Abstract] [PDF]


Striatal neurons are recruited dynamically into collective representations of self-initiated and learned actions in freely-moving mice

Lior Tiroshi, Yara Atamna, Naomi Gilin, and Joshua A Goldberg

bioRxiv posted 31 October 2022 doi:10.1101/2022.10.30.514405

[Abstract] [PDF]

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