From the bioRxiv: A Selection of Recently Posted Papers from SCGB Investigators and Others

Each month, SCGB scans the bioRxiv for interesting papers from the SCGB community and beyond.

 

Towards standard practices for sharing computer code and programs in neuroscience

Stephen Eglen, Ben Marwick, Yaroslav Halchenko, Michael Hanke, Shoaib Sufi, Padraig Gleeson, R. Angus Silver, Andrew Davison, Linda Lanyon, Mathew Abrams, Thomas Wachtler, David J Willshaw, Christophe Pouzat, and Jean-Baptiste Poline

bioRxiv posted 28 February 2017

[Abstract] [PDF]

 

Laminar organization of encoding and memory reactivation in the parietal cortex

Aaron Wilber, Ivan Skelin, and Bruce L McNaughton

bioRxiv posted 25 February 2017

[Abstract] [PDF]

 

Modern machine learning far outperforms GLMs at predicting spikes

Ari S. Benjamin, Hugo L. Fernandes, Tucker Tomlinson, Pavan Ramkumar, Chris VerSteeg, Lee Miller, and Konrad Paul Kording

bioRxiv posted 24 February 2017

[Abstract] [PDF]

 

Learning place cells, grid cells and invariances: A unifying model

Simon N Weber and Henning Sprekeler

bioRxiv posted 24 February 2017

[Abstract] [PDF]

 

Low Dimensional Activity in Spiking Neuronal Networks

Emil Waernberg and Arvind Kumar

bioRxiv posted 22 February 2017

[Abstract] [PDF]

 

Biologically plausible learning in recurrent neural networks reproduces neural dynamics observed during cognitive tasks

Thomas Miconi

bioRxiv posted 22 February 2017

[Abstract] [PDF]

 

Recurrent inhibition in striatum enables transfer of time-flexible skills to basal ganglia

James M Murray and G. Sean Escola

bioRxiv posted 21 February 2017

[Abstract] [PDF]

 

Model-based spike sorting with a mixture of drifting t-distributions

Kevin Q Shan, Evgueniy V Lubenov, and Athanassios G Siapas

bioRxiv posted 20 February 2017

[Abstract] [PDF]

 

Feedforward inhibition allows input summation to vary in recurrent cortical networks

Mark H Histed

bioRxiv posted 20 February 2017

[Abstract] [PDF]

 

Monitoring large populations of locus coeruleus neurons reveals the non-global nature of the norepinephrine neuromodulatory system

Nelson K Totah, Ricardo M Neves, Stefano Panzeri, Nikos K Logothetis, and Oxana Eschenko

bioRxiv posted 18 February 2017

[Abstract] [PDF]

 

Simulating retinal encoding: factors influencing Vernier acuity

Haomiao Jiang, Nicolas Cottaris, James Golden, David Brainard, Joyce Farrell, and Brian Wandell

bioRxiv posted 17 February 2017

[Abstract] [PDF]

 

The HTM Spatial Pooler: a neocortical algorithm for online sparse distributed coding

Yuwei Cui, Subutai Ahmad, and Jeff Hawkins

bioRxiv posted 16 February 2017

[Abstract] [PDF]

 

NoRMCorre: An online algorithm for piecewise rigid motion correction of calcium imaging data

Eftychios A Pnevmatikakis and Andrea Giovannucci

bioRxiv posted 14 February 2017

[Abstract] [PDF]

 

Inferring decoding strategies for multiple correlated neural populations

Kaushik Lakshminarasimhan, Alexandre Pouget, Gregory DeAngelis, Dora Angelaki, and Xaq Pitkow

bioRxiv posted 13 February 2017

[Abstract] [PDF]

 

Pattern separation of spiketrains by individual granule cells of the dentate gyrus

Antoine D Madar, Laura A Ewell, and Mathew V Jones

bioRxiv posted 11 February 2017

[Abstract] [PDF]

 

Robust and efficient coding with grid cells

Lajos Vago and Balazs B Ujfalussy

bioRxiv posted 8 February 2017

[Abstract] [PDF]

 

Working memory and decision making in a fronto-parietal circuit model

John D Murray, Jorge H Jaramillo, and Xiao-Jing Wang

bioRxiv posted 6 February 2017

[Abstract] [PDF]

 

How activity dependent feedback inhibition may maintain head direction signals in mouse presubiculum

Jean Simonnet, Merie Nassar, Federico Stella, Ivan Cohen, Bertrand Mathon, Charlotte N Boccara, Richard Miles, and Desdemona Fricker

bioRxiv posted 4 February 2017

[Abstract] [PDF]

 

Effective synaptic interactions in subsampled nonlinear networks with strong coupling

Braden A. W. Brinkman, Fred Rieke, Eric Shea-Brown, and Michael Buice

bioRxiv posted 3 February 2017

[Abstract] [PDF]

 

A self-initiated two-alternative forced choice paradigm for head-fixed mice

Fred Marbach and Anthony M Zador

bioRxiv posted 2 February 2017

[Abstract] [PDF]

 

Task learning reveals neural signatures of internal models in rodent prefrontal cortex

Abhinav Singh, Adrien Peyrache, and Mark D Humphries

bioRxiv posted 1 February 2017

[Abstract] [PDF]

 

SkinnerTrax: high-throughput behavior-dependent optogenetic stimulation of Drosophila

Ulrich Stern and Chung-Hui Yang

bioRxiv posted 1 February 2017

[Abstract] [PDF]

 

Using computational theory to constrain statistical models of neural data

Scott W Linderman and Samuel J Gershman

bioRxiv posted 31 January 2017

[Abstract] [PDF]

 

A spiral attractor network drives locomotion in Aplysia

Angela M Bruno, William N Frost, and Mark D Humphries

bioRxiv posted 31 January 2017

[Abstract] [PDF]           

 

Real-time spike sorting platform for high-density extracellular probes with ground-truth validation and drift correction

James Jaeyoon Jun, Catalin Mitelut, Chongxi Lai, Sergey Gratiy, Costas Anastassiou, and Timothy D Harris

bioRxiv posted 30 January 2017

[Abstract] [PDF]

 

A computational toolbox and step-by-step tutorial for the analysis of neuronal population dynamics in calcium imaging data

Sebastián A. Romano, Verónica Pérez-Schuster, Adrien Jouary, Alessia Candeo, Jonathan Boulanger-Weill, and Germán Sumbre

bioRxiv posted 28 January 2017

[Abstract] [PDF]

 

Grid cells show field-to-field variability and this explains the aperiodic response of inhibitory interneurons

Benjamin Dunn, Daniel Wennberg, Ziwei Huang, and Yasser Roudi

bioRxiv posted 27 January 2017

[Abstract] [PDF]

 

Optimizing for generalization in the decoding of internally generated activity in the hippocampus

Matthijs van der Meer, Alyssa A Carey, and Youki Tanaka

bioRxiv posted 24 January 2017

[Abstract] [PDF]

Add a Comment

Leave a Comment

Your email address will not be published. Your name will appear near your comment. Required *