From the bioRxiv: A Selection of Recently Posted Papers from SCGB Investigators and Others
Each month, SCGB scans the bioRxiv for interesting papers from the SCGB community and beyond.
Towards standard practices for sharing computer code and programs in neuroscience
Stephen Eglen, Ben Marwick, Yaroslav Halchenko, Michael Hanke, Shoaib Sufi, Padraig Gleeson, R. Angus Silver, Andrew Davison, Linda Lanyon, Mathew Abrams, Thomas Wachtler, David J Willshaw, Christophe Pouzat, and Jean-Baptiste Poline
bioRxiv posted 28 February 2017
Laminar organization of encoding and memory reactivation in the parietal cortex
Aaron Wilber, Ivan Skelin, and Bruce L McNaughton
bioRxiv posted 25 February 2017
Modern machine learning far outperforms GLMs at predicting spikes
Ari S. Benjamin, Hugo L. Fernandes, Tucker Tomlinson, Pavan Ramkumar, Chris VerSteeg, Lee Miller, and Konrad Paul Kording
bioRxiv posted 24 February 2017
Learning place cells, grid cells and invariances: A unifying model
Simon N Weber and Henning Sprekeler
bioRxiv posted 24 February 2017
Low Dimensional Activity in Spiking Neuronal Networks
Emil Waernberg and Arvind Kumar
bioRxiv posted 22 February 2017
Biologically plausible learning in recurrent neural networks reproduces neural dynamics observed during cognitive tasks
Thomas Miconi
bioRxiv posted 22 February 2017
Recurrent inhibition in striatum enables transfer of time-flexible skills to basal ganglia
James M Murray and G. Sean Escola
bioRxiv posted 21 February 2017
Model-based spike sorting with a mixture of drifting t-distributions
Kevin Q Shan, Evgueniy V Lubenov, and Athanassios G Siapas
bioRxiv posted 20 February 2017
Feedforward inhibition allows input summation to vary in recurrent cortical networks
Mark H Histed
bioRxiv posted 20 February 2017
Monitoring large populations of locus coeruleus neurons reveals the non-global nature of the norepinephrine neuromodulatory system
Nelson K Totah, Ricardo M Neves, Stefano Panzeri, Nikos K Logothetis, and Oxana Eschenko
bioRxiv posted 18 February 2017
Simulating retinal encoding: factors influencing Vernier acuity
Haomiao Jiang, Nicolas Cottaris, James Golden, David Brainard, Joyce Farrell, and Brian Wandell
bioRxiv posted 17 February 2017
The HTM Spatial Pooler: a neocortical algorithm for online sparse distributed coding
Yuwei Cui, Subutai Ahmad, and Jeff Hawkins
bioRxiv posted 16 February 2017
NoRMCorre: An online algorithm for piecewise rigid motion correction of calcium imaging data
Eftychios A Pnevmatikakis and Andrea Giovannucci
bioRxiv posted 14 February 2017
Inferring decoding strategies for multiple correlated neural populations
Kaushik Lakshminarasimhan, Alexandre Pouget, Gregory DeAngelis, Dora Angelaki, and Xaq Pitkow
bioRxiv posted 13 February 2017
Pattern separation of spiketrains by individual granule cells of the dentate gyrus
Antoine D Madar, Laura A Ewell, and Mathew V Jones
bioRxiv posted 11 February 2017
Robust and efficient coding with grid cells
Lajos Vago and Balazs B Ujfalussy
bioRxiv posted 8 February 2017
Working memory and decision making in a fronto-parietal circuit model
John D Murray, Jorge H Jaramillo, and Xiao-Jing Wang
bioRxiv posted 6 February 2017
How activity dependent feedback inhibition may maintain head direction signals in mouse presubiculum
Jean Simonnet, Merie Nassar, Federico Stella, Ivan Cohen, Bertrand Mathon, Charlotte N Boccara, Richard Miles, and Desdemona Fricker
bioRxiv posted 4 February 2017
Effective synaptic interactions in subsampled nonlinear networks with strong coupling
Braden A. W. Brinkman, Fred Rieke, Eric Shea-Brown, and Michael Buice
bioRxiv posted 3 February 2017
A self-initiated two-alternative forced choice paradigm for head-fixed mice
Fred Marbach and Anthony M Zador
bioRxiv posted 2 February 2017
Task learning reveals neural signatures of internal models in rodent prefrontal cortex
Abhinav Singh, Adrien Peyrache, and Mark D Humphries
bioRxiv posted 1 February 2017
SkinnerTrax: high-throughput behavior-dependent optogenetic stimulation of Drosophila
Ulrich Stern and Chung-Hui Yang
bioRxiv posted 1 February 2017
Using computational theory to constrain statistical models of neural data
Scott W Linderman and Samuel J Gershman
bioRxiv posted 31 January 2017
A spiral attractor network drives locomotion in Aplysia
Angela M Bruno, William N Frost, and Mark D Humphries
bioRxiv posted 31 January 2017
Real-time spike sorting platform for high-density extracellular probes with ground-truth validation and drift correction
James Jaeyoon Jun, Catalin Mitelut, Chongxi Lai, Sergey Gratiy, Costas Anastassiou, and Timothy D Harris
bioRxiv posted 30 January 2017
A computational toolbox and step-by-step tutorial for the analysis of neuronal population dynamics in calcium imaging data
Sebastián A. Romano, Verónica Pérez-Schuster, Adrien Jouary, Alessia Candeo, Jonathan Boulanger-Weill, and Germán Sumbre
bioRxiv posted 28 January 2017
Grid cells show field-to-field variability and this explains the aperiodic response of inhibitory interneurons
Benjamin Dunn, Daniel Wennberg, Ziwei Huang, and Yasser Roudi
bioRxiv posted 27 January 2017
Optimizing for generalization in the decoding of internally generated activity in the hippocampus
Matthijs van der Meer, Alyssa A Carey, and Youki Tanaka
bioRxiv posted 24 January 2017
